Wall clock time and date at job start Tue Mar 31 2020 21:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39910 * 109.46940 * 2 1 4 4 F 1.39898 * 109.47262 * 239.99920 * 2 1 3 5 5 C 1.50699 * 109.46981 * 119.99242 * 2 1 3 6 6 O 1.21283 * 120.00451 * 335.00581 * 5 2 1 7 7 N 1.34775 * 119.99903 * 155.00116 * 5 2 1 8 8 C 1.46495 * 120.00210 * 180.02562 * 7 5 2 9 9 H 1.09004 * 112.90928 * 336.24600 * 8 7 5 10 10 C 1.53958 * 113.67379 * 107.54876 * 8 7 5 11 11 C 1.53784 * 87.11296 * 139.89125 * 10 8 7 12 12 C 1.52999 * 113.61464 * 89.19084 * 11 10 8 13 13 N 1.46494 * 109.46874 * 77.14927 * 12 11 10 14 14 C 1.36940 * 119.99711 * 174.59017 * 13 12 11 15 15 H 1.08006 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00070 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99997 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47286 * 89.99857 * 18 16 14 20 20 H 1.48499 * 109.47026 * 209.99955 * 18 16 14 21 21 H 1.48505 * 109.47237 * 329.99518 * 18 16 14 22 22 C 1.50697 * 113.61103 * 220.09395 * 11 10 8 23 23 C 1.38240 * 120.00171 * 331.41960 * 22 11 10 24 24 C 1.38228 * 119.99849 * 179.79014 * 23 22 11 25 25 C 1.38240 * 120.00335 * 0.46525 * 24 23 22 26 26 C 1.38235 * 119.99512 * 359.76703 * 25 24 23 27 27 C 1.38227 * 120.00160 * 0.02562 * 26 25 24 28 28 C 1.53779 * 113.61492 * 205.00053 * 8 7 5 29 29 H 1.08999 * 109.47170 * 300.00525 * 1 2 3 30 30 H 1.08999 * 109.47154 * 60.00256 * 1 2 3 31 31 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99867 * 359.97438 * 7 5 2 33 33 H 1.09002 * 113.53229 * 25.33544 * 10 8 7 34 34 H 1.08991 * 113.74071 * 254.47497 * 10 8 7 35 35 H 1.08995 * 109.47092 * 197.15411 * 12 11 10 36 36 H 1.08998 * 109.46642 * 317.15331 * 12 11 10 37 37 H 0.96999 * 120.00584 * 354.59713 * 13 12 11 38 38 H 0.96996 * 120.00087 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.99801 * 0.02562 * 23 22 11 40 40 H 1.08006 * 120.00159 * 180.25116 * 24 23 22 41 41 H 1.08002 * 120.00433 * 179.78905 * 25 24 23 42 42 H 1.08002 * 119.99467 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.99756 * 179.97438 * 27 26 25 44 44 H 1.09001 * 113.61998 * 105.46815 * 28 8 7 45 45 H 1.09001 * 113.61680 * 334.64964 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7102 1.2306 6 8 1.3369 -0.7703 2.2224 7 7 3.2543 -1.2788 1.2289 8 6 3.7424 -1.9697 2.4249 9 1 3.2595 -1.6266 3.3399 10 6 3.7761 -3.5024 2.2829 11 6 5.1156 -3.4650 3.0375 12 6 4.9657 -3.5582 4.5572 13 7 4.6921 -4.9465 4.9366 14 6 4.6292 -5.2950 6.2594 15 1 4.7810 -4.5463 7.0230 16 6 4.3705 -6.6105 6.6190 17 7 4.3096 -6.9455 7.8905 18 14 4.1088 -7.9055 5.2985 19 1 5.4129 -8.5204 4.9427 20 1 3.1899 -8.9544 5.8090 21 1 3.5155 -7.2713 4.0939 22 6 6.1438 -4.4208 2.4897 23 6 5.7406 -5.5858 1.8641 24 6 6.6838 -6.4604 1.3578 25 6 8.0303 -6.1748 1.4855 26 6 8.4335 -5.0122 2.1154 27 6 7.4903 -4.1356 2.6179 28 6 5.2761 -2.0253 2.5213 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.8103 -1.2311 0.4354 33 1 3.8655 -3.8420 1.2510 34 1 2.9816 -4.0112 2.8286 35 1 5.8877 -3.2260 5.0343 36 1 4.1403 -2.9238 4.8804 37 1 4.5555 -5.6188 4.2509 38 1 4.1292 -7.8648 8.1418 39 1 4.6888 -5.8107 1.7675 40 1 6.3687 -7.3686 0.8654 41 1 8.7673 -6.8598 1.0930 42 1 9.4855 -4.7890 2.2148 43 1 7.8054 -3.2274 3.1103 44 1 5.6923 -1.3405 3.2603 45 1 5.7771 -1.9610 1.5554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105400976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:43 Heat of formation + Delta-G solvation = -73.531704 kcal Electronic energy + Delta-G solvation = -29720.423723 eV Core-core repulsion = 25374.663759 eV Total energy + Delta-G solvation = -4345.759964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.57660 -47.57321 -40.84387 -39.53789 -37.91421 -34.91792 -33.62905 -31.94503 -31.16027 -30.76451 -30.57968 -27.09625 -25.95793 -25.42655 -23.61886 -22.26377 -21.88305 -21.47428 -20.93812 -19.22522 -18.49487 -18.11809 -17.55326 -17.25026 -16.73327 -16.13104 -15.49752 -15.15311 -14.87349 -14.71602 -14.58769 -14.41955 -14.34544 -13.89219 -13.76524 -13.52175 -13.36104 -13.24670 -13.02631 -12.97055 -12.80012 -12.53398 -12.42144 -12.37719 -12.35004 -12.01322 -11.56272 -11.40145 -11.06124 -10.89086 -10.73672 -10.40368 -10.27506 -10.13184 -10.07482 -9.58363 -9.34318 -8.88476 -8.70246 -8.45700 -7.21247 -5.75478 -3.10177 1.57739 1.61067 1.84057 2.31765 3.34847 3.37235 3.41143 3.45437 3.59783 3.97475 4.09210 4.15369 4.39495 4.42785 4.60783 4.69432 4.76304 5.00876 5.10661 5.15620 5.16507 5.18439 5.31203 5.47861 5.50429 5.54539 5.59376 5.62375 5.68246 5.74941 5.81412 5.87311 6.02342 6.12211 6.17570 6.23076 6.33822 6.52582 6.56975 6.69412 6.72958 6.84979 6.96253 7.20648 7.56642 8.00592 8.43659 9.23163 9.95482 10.15468 11.43087 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.003500 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.092801 B = 7998.226885 C = 9342.458041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.280 3.720 3 F -0.183 7.183 4 F -0.190 7.190 5 C 0.484 3.516 6 O -0.497 6.497 7 N -0.698 5.698 8 C 0.119 3.881 9 H 0.125 0.875 10 C -0.141 4.141 11 C -0.049 4.049 12 C 0.183 3.817 13 N -0.750 5.750 14 C -0.242 4.242 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.934 5.934 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.043 4.043 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.108 4.108 28 C -0.127 4.127 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.406 0.594 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.031 0.969 37 H 0.363 0.637 38 H 0.259 0.741 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.083 0.917 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 12.547 -21.028 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.240 3.760 3 F -0.164 7.164 4 F -0.171 7.171 5 C 0.265 3.735 6 O -0.371 6.371 7 N -0.348 5.348 8 C 0.016 3.984 9 H 0.143 0.857 10 C -0.179 4.179 11 C -0.050 4.050 12 C 0.056 3.944 13 N -0.396 5.396 14 C -0.371 4.371 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.582 5.582 18 Si 0.709 3.291 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.043 4.043 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.126 4.126 28 C -0.166 4.166 29 H 0.121 0.879 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.242 0.758 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.196 0.804 38 H 0.069 0.931 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.101 0.899 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.129 12.537 -20.057 23.653 hybrid contribution 0.259 -1.124 -1.337 1.766 sum 0.130 11.414 -21.394 24.248 Atomic orbital electron populations 1.22643 0.88780 1.06489 1.06174 1.21430 0.96002 0.76178 0.82360 1.93092 1.90528 1.36176 1.96578 1.93061 1.90480 1.80678 1.52882 1.20743 0.83133 0.80525 0.89124 1.90824 1.55549 1.57844 1.32852 1.46043 1.16560 1.54739 1.17463 1.22811 0.94888 0.92263 0.88486 0.85690 1.23602 0.98041 0.95360 1.00930 1.20917 0.93664 0.93267 0.97153 1.20432 0.98512 0.88040 0.87417 1.42610 1.87492 1.04510 1.04949 1.19043 1.40951 0.94675 0.82467 0.89176 1.24620 1.01886 0.96831 0.95543 1.69697 1.56212 1.18022 1.14281 0.86619 0.77957 0.82551 0.81953 1.20947 1.21748 1.20374 1.19435 0.93601 0.94906 0.96404 1.21027 0.99573 0.94121 0.98656 1.21081 0.93298 0.99131 1.00252 1.21054 0.95799 0.97383 1.00487 1.21059 0.99174 0.94754 0.98732 1.20900 0.92333 0.99905 0.99496 1.23400 0.94499 0.96500 1.02172 0.87937 0.89165 0.88690 0.75834 0.89584 0.89721 0.94590 0.95129 0.80387 0.93094 0.86365 0.86495 0.86587 0.86423 0.86234 0.89854 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 8.92 37.16 0.33 -1.02 16 2 C 0.28 2.62 2.47 -27.88 -0.07 2.55 16 3 F -0.18 -1.84 17.05 2.25 0.04 -1.80 16 4 F -0.19 -1.73 16.51 2.25 0.04 -1.69 16 5 C 0.48 5.60 7.23 -10.99 -0.08 5.52 16 6 O -0.50 -7.35 15.70 5.55 0.09 -7.27 16 7 N -0.70 -7.12 5.29 -52.93 -0.28 -7.40 16 8 C 0.12 1.41 3.90 -67.03 -0.26 1.15 16 9 H 0.13 1.72 6.94 -51.93 -0.36 1.36 16 10 C -0.14 -1.88 6.00 -25.82 -0.16 -2.03 16 11 C -0.05 -0.70 0.70 -154.85 -0.11 -0.81 16 12 C 0.18 3.42 5.55 -4.05 -0.02 3.39 16 13 N -0.75 -17.67 5.13 -59.91 -0.31 -17.98 16 14 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 15 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 18 Si 0.88 22.53 27.74 -169.99 -4.71 17.82 16 19 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 22 C -0.04 -0.64 4.26 -104.62 -0.45 -1.09 16 23 C -0.12 -1.76 8.23 -39.58 -0.33 -2.09 16 24 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 25 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 26 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 27 C -0.11 -1.51 9.39 -39.59 -0.37 -1.88 16 28 C -0.13 -1.37 6.62 -25.92 -0.17 -1.54 16 29 H 0.10 0.78 7.87 -51.93 -0.41 0.38 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 3.23 8.28 -40.82 -0.34 2.89 16 33 H 0.09 1.02 7.45 -51.93 -0.39 0.63 16 34 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.58 7.32 -51.93 -0.38 0.20 16 37 H 0.36 8.44 4.42 -40.82 -0.18 8.26 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.12 1.77 7.03 -52.49 -0.37 1.40 16 40 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.48 8.03 -52.48 -0.42 1.06 16 44 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 45 H 0.09 0.81 8.07 -51.93 -0.42 0.40 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -33.73 378.09 -8.03 -41.76 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.23 Total: 10.68 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.13 Total: -10.91 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.19 Total: -54.28 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.27 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.08 Total: -3.50 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.73 -8.03 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105400976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.774 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds