Wall clock time and date at job start Tue Mar 31 2020 21:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39910 * 109.46940 * 2 1 4 4 F 1.39898 * 109.47262 * 239.99920 * 2 1 3 5 5 C 1.50699 * 109.46981 * 119.99242 * 2 1 3 6 6 O 1.21283 * 120.00451 * 335.00581 * 5 2 1 7 7 N 1.34775 * 119.99903 * 155.00116 * 5 2 1 8 8 C 1.46495 * 120.00210 * 180.02562 * 7 5 2 9 9 H 1.09004 * 112.90928 * 336.24600 * 8 7 5 10 10 C 1.53958 * 113.67379 * 107.54876 * 8 7 5 11 11 C 1.53784 * 87.11296 * 139.89125 * 10 8 7 12 12 C 1.52999 * 113.61464 * 89.19084 * 11 10 8 13 13 N 1.46494 * 109.46874 * 77.14927 * 12 11 10 14 14 C 1.36940 * 119.99711 * 174.59017 * 13 12 11 15 15 H 1.08006 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31626 * 120.00070 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99997 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47286 * 89.99857 * 18 16 14 20 20 H 1.48499 * 109.47026 * 209.99955 * 18 16 14 21 21 H 1.48505 * 109.47237 * 329.99518 * 18 16 14 22 22 C 1.50697 * 113.61103 * 220.09395 * 11 10 8 23 23 C 1.38240 * 120.00171 * 331.41960 * 22 11 10 24 24 C 1.38228 * 119.99849 * 179.79014 * 23 22 11 25 25 C 1.38240 * 120.00335 * 0.46525 * 24 23 22 26 26 C 1.38235 * 119.99512 * 359.76703 * 25 24 23 27 27 C 1.38227 * 120.00160 * 0.02562 * 26 25 24 28 28 C 1.53779 * 113.61492 * 205.00053 * 8 7 5 29 29 H 1.08999 * 109.47170 * 300.00525 * 1 2 3 30 30 H 1.08999 * 109.47154 * 60.00256 * 1 2 3 31 31 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99867 * 359.97438 * 7 5 2 33 33 H 1.09002 * 113.53229 * 25.33544 * 10 8 7 34 34 H 1.08991 * 113.74071 * 254.47497 * 10 8 7 35 35 H 1.08995 * 109.47092 * 197.15411 * 12 11 10 36 36 H 1.08998 * 109.46642 * 317.15331 * 12 11 10 37 37 H 0.96999 * 120.00584 * 354.59713 * 13 12 11 38 38 H 0.96996 * 120.00087 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.99801 * 0.02562 * 23 22 11 40 40 H 1.08006 * 120.00159 * 180.25116 * 24 23 22 41 41 H 1.08002 * 120.00433 * 179.78905 * 25 24 23 42 42 H 1.08002 * 119.99467 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.99756 * 179.97438 * 27 26 25 44 44 H 1.09001 * 113.61998 * 105.46815 * 28 8 7 45 45 H 1.09001 * 113.61680 * 334.64964 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7102 1.2306 6 8 1.3369 -0.7703 2.2224 7 7 3.2543 -1.2788 1.2289 8 6 3.7424 -1.9697 2.4249 9 1 3.2595 -1.6266 3.3399 10 6 3.7761 -3.5024 2.2829 11 6 5.1156 -3.4650 3.0375 12 6 4.9657 -3.5582 4.5572 13 7 4.6921 -4.9465 4.9366 14 6 4.6292 -5.2950 6.2594 15 1 4.7810 -4.5463 7.0230 16 6 4.3705 -6.6105 6.6190 17 7 4.3096 -6.9455 7.8905 18 14 4.1088 -7.9055 5.2985 19 1 5.4129 -8.5204 4.9427 20 1 3.1899 -8.9544 5.8090 21 1 3.5155 -7.2713 4.0939 22 6 6.1438 -4.4208 2.4897 23 6 5.7406 -5.5858 1.8641 24 6 6.6838 -6.4604 1.3578 25 6 8.0303 -6.1748 1.4855 26 6 8.4335 -5.0122 2.1154 27 6 7.4903 -4.1356 2.6179 28 6 5.2761 -2.0253 2.5213 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.8103 -1.2311 0.4354 33 1 3.8655 -3.8420 1.2510 34 1 2.9816 -4.0112 2.8286 35 1 5.8877 -3.2260 5.0343 36 1 4.1403 -2.9238 4.8804 37 1 4.5555 -5.6188 4.2509 38 1 4.1292 -7.8648 8.1418 39 1 4.6888 -5.8107 1.7675 40 1 6.3687 -7.3686 0.8654 41 1 8.7673 -6.8598 1.0930 42 1 9.4855 -4.7890 2.2148 43 1 7.8054 -3.2274 3.1103 44 1 5.6923 -1.3405 3.2603 45 1 5.7771 -1.9610 1.5554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105400976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:43 Heat of formation + Delta-G solvation = -94.543298 kcal Electronic energy + Delta-G solvation = -29721.334854 eV Core-core repulsion = 25374.663759 eV Total energy + Delta-G solvation = -4346.671095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.32989 -48.32350 -41.89543 -40.54019 -38.94145 -36.52715 -35.00505 -33.21865 -32.60194 -31.79014 -31.64794 -28.60013 -26.97280 -26.50621 -24.80527 -23.85816 -23.09042 -22.46769 -21.86599 -20.44073 -19.78357 -19.07661 -18.84726 -18.30264 -17.62218 -17.05165 -16.65968 -16.43681 -16.21164 -16.05043 -15.65300 -15.61068 -15.18793 -15.11617 -14.75452 -14.65636 -14.63817 -14.49745 -14.24357 -13.98697 -13.80011 -13.57749 -13.40636 -13.38979 -13.34467 -13.10446 -13.03996 -12.83354 -12.43195 -12.25372 -12.10617 -12.07404 -11.81886 -11.40150 -11.34452 -11.13573 -10.95143 -10.29968 -9.74600 -9.52016 -9.29294 -8.04844 -5.36288 0.52978 0.56816 0.92829 1.31122 1.35099 1.41262 1.46821 2.44696 2.58153 2.86994 2.93093 3.24639 3.28004 3.34130 3.39238 3.44092 3.67951 3.71336 3.95025 4.01973 4.20600 4.21735 4.33709 4.39864 4.49709 4.55895 4.64314 4.67505 4.72794 4.76558 4.84079 4.89610 4.93656 4.98958 5.02162 5.12623 5.22152 5.23153 5.38020 5.65601 5.67726 5.73768 5.78176 6.09413 6.18302 6.20669 6.72574 7.06994 7.83873 8.03206 9.17092 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.003500 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.092801 B = 7998.226885 C = 9342.458041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.288 3.712 3 F -0.186 7.186 4 F -0.186 7.186 5 C 0.480 3.520 6 O -0.535 6.535 7 N -0.685 5.685 8 C 0.123 3.877 9 H 0.103 0.897 10 C -0.137 4.137 11 C -0.048 4.048 12 C 0.179 3.821 13 N -0.751 5.751 14 C -0.229 4.229 15 H 0.059 0.941 16 C -0.059 4.059 17 N -0.983 5.983 18 Si 0.943 3.057 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.254 1.254 22 C -0.057 4.057 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.105 4.105 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.420 0.580 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.027 0.973 37 H 0.366 0.634 38 H 0.257 0.743 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 12.956 -24.305 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.248 3.752 3 F -0.167 7.167 4 F -0.167 7.167 5 C 0.262 3.738 6 O -0.411 6.411 7 N -0.336 5.336 8 C 0.019 3.981 9 H 0.121 0.879 10 C -0.176 4.176 11 C -0.049 4.049 12 C 0.053 3.947 13 N -0.397 5.397 14 C -0.360 4.360 15 H 0.077 0.923 16 C -0.251 4.251 17 N -0.634 5.634 18 Si 0.771 3.229 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.179 1.179 22 C -0.057 4.057 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.137 4.137 28 C -0.144 4.144 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.258 0.742 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.200 0.800 38 H 0.066 0.934 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.112 0.888 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.911 12.991 -23.405 26.784 hybrid contribution 0.002 -1.176 -0.284 1.210 sum 0.913 11.815 -23.690 26.488 Atomic orbital electron populations 1.22704 0.87180 1.07053 1.07113 1.21338 0.96918 0.75618 0.81316 1.93090 1.90690 1.36354 1.96537 1.93072 1.90563 1.80598 1.52435 1.21190 0.82983 0.80222 0.89440 1.90811 1.56591 1.59320 1.34421 1.45929 1.16403 1.53851 1.17442 1.22558 0.95767 0.91433 0.88369 0.87922 1.23579 0.96508 0.96097 1.01379 1.20701 0.94485 0.95863 0.93898 1.20562 0.97872 0.85223 0.91042 1.42602 1.87325 1.06695 1.03049 1.19056 1.38950 0.93961 0.84075 0.92346 1.25383 1.02785 0.99215 0.97700 1.69869 1.58448 1.18416 1.16660 0.85573 0.77969 0.79508 0.79890 1.20408 1.22101 1.17920 1.19504 0.94075 0.95078 0.97073 1.21163 0.99774 0.94758 0.99731 1.21375 0.93705 0.99590 1.00258 1.21418 0.96018 0.97783 0.99943 1.21422 1.00364 0.94441 0.97912 1.21157 0.92173 1.00764 0.99636 1.23334 0.93567 0.93902 1.03561 0.88422 0.86822 0.88360 0.74166 0.87717 0.92585 0.94870 0.95558 0.79996 0.93378 0.86794 0.84937 0.84174 0.84029 0.85005 0.88849 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.92 71.98 0.64 -1.76 16 2 C 0.29 4.88 2.47 29.85 0.07 4.95 16 3 F -0.19 -3.41 17.05 44.97 0.77 -2.64 16 4 F -0.19 -2.94 16.51 44.97 0.74 -2.19 16 5 C 0.48 10.60 7.23 87.66 0.63 11.23 16 6 O -0.54 -15.85 15.70 -3.04 -0.05 -15.90 16 7 N -0.69 -12.80 5.29 -439.76 -2.33 -15.12 16 8 C 0.12 2.79 3.90 45.58 0.18 2.97 16 9 H 0.10 2.86 6.94 -2.39 -0.02 2.84 16 10 C -0.14 -3.52 6.00 31.18 0.19 -3.33 16 11 C -0.05 -1.32 0.70 -52.40 -0.04 -1.36 16 12 C 0.18 6.69 5.55 86.38 0.48 7.17 16 13 N -0.75 -35.52 5.13 -343.47 -1.76 -37.29 16 14 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 15 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 16 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 17 N -0.98 -64.24 13.97 21.65 0.30 -63.94 16 18 Si 0.94 46.83 27.74 68.60 1.90 48.74 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 21 H -0.25 -11.50 6.52 99.48 0.65 -10.85 16 22 C -0.06 -1.59 4.26 -19.87 -0.08 -1.68 16 23 C -0.14 -3.89 8.23 22.27 0.18 -3.70 16 24 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 25 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 26 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 27 C -0.12 -3.04 9.39 22.27 0.21 -2.83 16 28 C -0.11 -2.03 6.62 31.12 0.21 -1.82 16 29 H 0.10 1.40 7.87 -2.39 -0.02 1.39 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.42 5.51 8.28 -92.71 -0.77 4.74 16 33 H 0.10 2.29 7.45 -2.39 -0.02 2.27 16 34 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.03 1.02 7.32 -2.39 -0.02 1.00 16 37 H 0.37 16.78 4.42 -92.71 -0.41 16.37 16 38 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 39 H 0.11 3.24 7.03 -2.91 -0.02 3.22 16 40 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 41 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.13 2.92 8.03 -2.91 -0.02 2.90 16 44 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 45 H 0.12 1.67 8.07 -2.39 -0.02 1.65 16 Total: -1.00 -74.59 378.09 4.05 -70.53 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.21 Total: 32.25 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.69 Total: -14.43 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.79 Total: -116.35 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.05 Total: -15.90 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 1.51 Total: -4.84 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.74 kcal Total: -74.59 4.05 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105400976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.012 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds