Wall clock time and date at job start Tue Mar 31 2020 21:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 O 1.42900 * 109.46888 * 120.00108 * 2 1 3 5 5 C 1.42903 * 113.99795 * 90.00088 * 4 2 1 6 6 C 1.53004 * 109.46870 * 179.97438 * 5 4 2 7 7 O 1.42904 * 109.46902 * 64.99708 * 6 5 4 8 8 N 1.41600 * 113.99638 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99750 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00194 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99844 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00093 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.09010 * 109.46744 * 60.00060 * 1 2 3 29 29 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46973 * 299.99978 * 1 2 3 31 31 H 1.09002 * 109.46973 * 240.00022 * 2 1 3 32 32 H 1.09004 * 109.46813 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47615 * 299.99574 * 3 2 1 34 34 H 1.09002 * 109.47291 * 60.00217 * 3 2 1 35 35 H 1.08999 * 109.46904 * 59.99933 * 5 4 2 36 36 H 1.09000 * 109.46928 * 299.99831 * 5 4 2 37 37 H 1.09005 * 109.46713 * 305.00057 * 6 5 4 38 38 H 1.08997 * 109.47210 * 185.00076 * 6 5 4 39 39 H 0.97005 * 120.00010 * 359.97438 * 8 7 6 40 40 H 0.97004 * 119.99718 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 42 42 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9885 6 6 2.7090 -2.6926 2.2941 7 8 1.7015 -2.5745 3.3006 8 7 2.0745 -3.1151 4.5551 9 6 1.2141 -3.0689 5.5915 10 8 0.1178 -2.5626 5.4494 11 7 1.5690 -3.5839 6.7854 12 6 0.6340 -3.5332 7.9121 13 6 1.2692 -4.1705 9.1210 14 6 1.1113 -5.5254 9.3509 15 6 1.6921 -6.1138 10.4593 16 6 2.4374 -5.3509 11.3370 17 6 2.5930 -3.9896 11.1121 18 8 3.3199 -3.2361 11.9763 19 6 3.7628 -3.8440 13.0953 20 1 3.6051 -4.9035 13.2328 21 6 4.4208 -3.1087 14.0695 22 7 4.6124 -1.8180 13.9022 23 14 5.0338 -3.9507 15.6202 24 1 6.0050 -5.0132 15.2556 25 1 5.6976 -2.9522 16.4963 26 1 3.8856 -4.5560 16.3418 27 6 2.0077 -3.4014 9.9982 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.9319 -2.2467 0.1986 36 1 1.2537 -2.5433 0.7124 37 1 3.6080 -2.1672 2.6166 38 1 2.9411 -3.7454 2.1341 39 1 2.9490 -3.5193 4.6683 40 1 2.4438 -3.9874 6.8988 41 1 -0.2769 -4.0728 7.6528 42 1 0.3901 -2.4946 8.1353 43 1 0.5332 -6.1249 8.6633 44 1 1.5667 -7.1717 10.6363 45 1 2.8950 -5.8120 12.1998 46 1 5.0724 -1.3036 14.5839 47 1 2.1300 -2.3435 9.8185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117662884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:18 Heat of formation + Delta-G solvation = -72.291877 kcal Electronic energy + Delta-G solvation = -27651.639789 eV Core-core repulsion = 23417.021103 eV Total energy + Delta-G solvation = -4234.618686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -39.86848 -39.11500 -38.88347 -37.42468 -36.70477 -34.41535 -33.56041 -32.39499 -32.21655 -30.55889 -29.33256 -28.90807 -27.56625 -25.83142 -24.99684 -23.17739 -21.74026 -21.71209 -21.25351 -20.79647 -18.75657 -18.42719 -17.54367 -17.46219 -16.92409 -15.93325 -15.77232 -15.49671 -15.23376 -15.14794 -14.92579 -14.54269 -14.43386 -14.21582 -13.83411 -13.62308 -13.52214 -13.46076 -13.09842 -12.72255 -12.63145 -12.45214 -12.39250 -12.21320 -11.86476 -11.78512 -11.69075 -11.37724 -11.35572 -11.00502 -10.92941 -10.82903 -10.70939 -10.49829 -10.18766 -9.97997 -9.42032 -9.16933 -8.89397 -8.76521 -8.26393 -7.33568 -6.49290 -4.09000 1.41434 2.05242 2.27583 3.10007 3.11504 3.14413 3.18624 3.27357 3.84909 3.92320 4.29733 4.39509 4.53855 4.60746 4.65289 4.69607 4.78893 4.85956 4.92481 4.94451 5.06537 5.21287 5.25102 5.28053 5.41354 5.46613 5.47393 5.54030 5.77193 5.82180 5.84993 5.89467 5.91031 6.06800 6.24900 6.50732 6.54385 6.59274 6.80610 6.81583 6.87175 6.99232 7.18728 7.26771 7.35202 7.70202 7.94219 7.95465 8.65543 8.95810 9.64423 10.68303 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.001654 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.657414 B =16928.439711 C =17819.714247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.374 6.374 5 C 0.071 3.929 6 C 0.032 3.968 7 O -0.119 6.119 8 N -0.619 5.619 9 C 0.721 3.279 10 O -0.575 6.575 11 N -0.728 5.728 12 C 0.190 3.810 13 C -0.074 4.074 14 C -0.193 4.193 15 C -0.077 4.077 16 C -0.225 4.225 17 C 0.149 3.851 18 O -0.176 6.176 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.169 4.169 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.403 0.597 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.127 0.873 46 H 0.271 0.729 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 -3.007 -25.287 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.294 6.294 5 C -0.007 4.007 6 C -0.045 4.045 7 O -0.122 6.122 8 N -0.324 5.324 9 C 0.421 3.579 10 O -0.450 6.450 11 N -0.387 5.387 12 C 0.067 3.933 13 C -0.074 4.074 14 C -0.213 4.213 15 C -0.095 4.095 16 C -0.245 4.245 17 C 0.095 3.905 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.188 4.188 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.242 0.758 40 H 0.234 0.766 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.081 0.919 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.057 -1.873 -25.170 25.424 hybrid contribution 1.398 -1.119 0.518 1.864 sum -1.659 -2.991 -24.652 24.888 Atomic orbital electron populations 1.22307 0.95755 1.02559 1.02781 1.22101 0.93949 0.93863 0.87688 1.21870 1.01707 0.94459 1.02754 1.88050 1.86583 1.19021 1.35728 1.22439 1.00832 0.82826 0.94588 1.23053 0.93122 1.00395 0.87975 1.90658 1.33975 1.78975 1.08580 1.46157 1.18540 1.65617 1.02083 1.15359 0.83628 0.79726 0.79183 1.90945 1.21243 1.50171 1.82676 1.45087 1.20529 1.64506 1.08583 1.20049 0.90647 1.01118 0.81451 1.19261 0.99133 0.93759 0.95294 1.20497 1.06606 0.94033 1.00159 1.20745 0.96193 0.98547 0.94025 1.21243 1.06106 0.94144 1.02973 1.19329 0.90214 0.90207 0.90703 1.83983 1.58241 1.37025 1.28671 1.21274 1.37210 0.94318 0.94230 0.89086 1.25295 0.96799 0.95570 0.98784 1.70023 1.38784 1.05973 1.34720 0.85779 0.79118 0.78602 0.79920 1.19505 1.20255 1.19462 1.20113 1.03062 0.99843 0.95825 0.91723 0.92426 0.91380 0.92349 0.92030 0.91220 0.91510 0.90901 0.91980 0.91028 0.90563 0.75812 0.76649 0.90827 0.90724 0.87408 0.87288 0.85488 0.91885 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.53 37.16 0.35 -0.97 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.15 -1.01 9.56 37.16 0.36 -0.65 16 4 O -0.37 -3.81 9.95 -40.09 -0.40 -4.21 16 5 C 0.07 0.53 6.13 37.16 0.23 0.75 16 6 C 0.03 0.26 6.61 37.16 0.25 0.50 16 7 O -0.12 -1.55 11.07 -34.81 -0.39 -1.93 16 8 N -0.62 -7.43 6.39 27.64 0.18 -7.26 16 9 C 0.72 11.03 8.71 -86.91 -0.76 10.27 16 10 O -0.57 -11.47 16.75 -12.86 -0.22 -11.69 16 11 N -0.73 -9.68 5.55 -66.42 -0.37 -10.05 16 12 C 0.19 2.81 5.80 -5.19 -0.03 2.78 16 13 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 14 C -0.19 -3.08 9.70 -39.53 -0.38 -3.47 16 15 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 16 C -0.23 -4.62 9.17 -39.40 -0.36 -4.98 16 17 C 0.15 3.44 6.65 -39.11 -0.26 3.18 16 18 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 19 C -0.39 -10.72 9.49 30.89 0.29 -10.43 16 20 H 0.09 2.27 5.21 -52.49 -0.27 2.00 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 23 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 27 C -0.17 -3.36 9.65 -39.39 -0.38 -3.74 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 36 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 3.21 8.56 -40.82 -0.35 2.86 16 40 H 0.40 4.42 8.48 -40.82 -0.35 4.08 16 41 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 42 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 43 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -35.35 404.27 -8.30 -43.66 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.11 Total: 8.00 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.83 Total: -8.72 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.57 Total: -41.37 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.00 Total: -22.69 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.35 -8.30 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117662884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.637 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds