Wall clock time and date at job start Tue Mar 31 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 O 1.42900 * 109.46888 * 120.00108 * 2 1 3 5 5 C 1.42903 * 113.99795 * 90.00088 * 4 2 1 6 6 C 1.53004 * 109.46870 * 179.97438 * 5 4 2 7 7 O 1.42904 * 109.46902 * 64.99708 * 6 5 4 8 8 N 1.41600 * 113.99638 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99750 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00194 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99844 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00093 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.09010 * 109.46744 * 60.00060 * 1 2 3 29 29 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46973 * 299.99978 * 1 2 3 31 31 H 1.09002 * 109.46973 * 240.00022 * 2 1 3 32 32 H 1.09004 * 109.46813 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47615 * 299.99574 * 3 2 1 34 34 H 1.09002 * 109.47291 * 60.00217 * 3 2 1 35 35 H 1.08999 * 109.46904 * 59.99933 * 5 4 2 36 36 H 1.09000 * 109.46928 * 299.99831 * 5 4 2 37 37 H 1.09005 * 109.46713 * 305.00057 * 6 5 4 38 38 H 1.08997 * 109.47210 * 185.00076 * 6 5 4 39 39 H 0.97005 * 120.00010 * 359.97438 * 8 7 6 40 40 H 0.97004 * 119.99718 * 0.02562 * 11 9 8 41 41 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 42 42 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 43 43 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 45 45 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 46 46 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 47 47 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2000 -2.0782 0.9885 6 6 2.7090 -2.6926 2.2941 7 8 1.7015 -2.5745 3.3006 8 7 2.0745 -3.1151 4.5551 9 6 1.2141 -3.0689 5.5915 10 8 0.1178 -2.5626 5.4494 11 7 1.5690 -3.5839 6.7854 12 6 0.6340 -3.5332 7.9121 13 6 1.2692 -4.1705 9.1210 14 6 1.1113 -5.5254 9.3509 15 6 1.6921 -6.1138 10.4593 16 6 2.4374 -5.3509 11.3370 17 6 2.5930 -3.9896 11.1121 18 8 3.3199 -3.2361 11.9763 19 6 3.7628 -3.8440 13.0953 20 1 3.6051 -4.9035 13.2328 21 6 4.4208 -3.1087 14.0695 22 7 4.6124 -1.8180 13.9022 23 14 5.0338 -3.9507 15.6202 24 1 6.0050 -5.0132 15.2556 25 1 5.6976 -2.9522 16.4963 26 1 3.8856 -4.5560 16.3418 27 6 2.0077 -3.4014 9.9982 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.9319 -2.2467 0.1986 36 1 1.2537 -2.5433 0.7124 37 1 3.6080 -2.1672 2.6166 38 1 2.9411 -3.7454 2.1341 39 1 2.9490 -3.5193 4.6683 40 1 2.4438 -3.9874 6.8988 41 1 -0.2769 -4.0728 7.6528 42 1 0.3901 -2.4946 8.1353 43 1 0.5332 -6.1249 8.6633 44 1 1.5667 -7.1717 10.6363 45 1 2.8950 -5.8120 12.1998 46 1 5.0724 -1.3036 14.5839 47 1 2.1300 -2.3435 9.8185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117662884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:17 Heat of formation + Delta-G solvation = -96.991342 kcal Electronic energy + Delta-G solvation = -27652.710838 eV Core-core repulsion = 23417.021103 eV Total energy + Delta-G solvation = -4235.689735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13439 -40.62137 -39.59726 -38.58475 -38.08124 -35.75334 -34.33051 -34.22280 -33.25373 -31.82981 -30.73073 -29.88145 -28.12362 -27.51161 -26.58912 -23.80890 -23.25041 -22.60945 -22.27940 -22.19223 -19.97188 -19.54960 -19.14870 -18.54207 -18.07297 -16.95563 -16.82799 -16.63960 -16.38632 -16.16900 -16.07835 -16.03240 -15.68006 -15.50643 -15.35720 -14.91632 -14.49363 -14.36343 -14.22361 -13.91408 -13.73967 -13.62634 -13.36204 -13.25007 -13.00005 -12.98878 -12.51262 -12.42977 -12.36729 -12.35613 -12.25145 -12.14048 -12.12214 -11.59671 -11.51441 -11.19123 -10.78794 -10.57545 -10.36245 -9.78442 -9.75191 -9.01392 -8.45300 -6.13920 0.23811 0.70372 0.79735 1.36828 1.47323 1.52896 2.06766 2.18910 2.65019 2.69639 2.95955 3.19999 3.42520 3.60897 3.83405 3.85074 4.04215 4.09963 4.12384 4.14043 4.26774 4.33676 4.35343 4.44302 4.44944 4.55652 4.62646 4.68072 4.72619 4.75912 4.87378 4.89776 4.92854 5.04212 5.13220 5.27399 5.28099 5.30607 5.33138 5.55827 5.65606 5.73051 5.74426 5.93823 6.03274 6.19220 6.29263 6.93563 6.99388 7.52917 7.80120 8.77532 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.001654 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.657414 B =16928.439711 C =17819.714247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 C -0.150 4.150 4 O -0.408 6.408 5 C 0.066 3.934 6 C 0.026 3.974 7 O -0.153 6.153 8 N -0.603 5.603 9 C 0.719 3.281 10 O -0.626 6.626 11 N -0.716 5.716 12 C 0.196 3.804 13 C -0.058 4.058 14 C -0.164 4.164 15 C -0.070 4.070 16 C -0.233 4.233 17 C 0.111 3.889 18 O -0.233 6.233 19 C -0.413 4.413 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.258 1.258 27 C -0.179 4.179 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.422 0.578 40 H 0.412 0.588 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.121 0.879 46 H 0.272 0.728 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 -6.163 -27.400 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.018 3.982 3 C -0.207 4.207 4 O -0.328 6.328 5 C -0.011 4.011 6 C -0.051 4.051 7 O -0.157 6.157 8 N -0.309 5.309 9 C 0.420 3.580 10 O -0.505 6.505 11 N -0.375 5.375 12 C 0.072 3.928 13 C -0.059 4.059 14 C -0.183 4.183 15 C -0.087 4.087 16 C -0.252 4.252 17 C 0.061 3.939 18 O -0.140 6.140 19 C -0.489 4.489 20 H 0.122 0.878 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.837 3.163 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.182 1.182 27 C -0.199 4.199 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.265 0.735 40 H 0.249 0.751 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.139 0.861 46 H 0.081 0.919 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.225 -5.094 -27.342 27.999 hybrid contribution 1.293 -0.261 0.813 1.549 sum -1.932 -5.355 -26.529 27.133 Atomic orbital electron populations 1.22310 0.96175 1.02232 1.02589 1.22284 0.93698 0.94266 0.87902 1.21891 1.01803 0.94220 1.02795 1.88015 1.86872 1.20540 1.37421 1.22677 1.01798 0.81575 0.95062 1.23412 0.92222 1.02541 0.86924 1.90649 1.36511 1.79356 1.09167 1.45882 1.18712 1.64652 1.01654 1.15472 0.83332 0.79353 0.79893 1.90912 1.23588 1.52390 1.83649 1.44823 1.20829 1.64168 1.07715 1.19931 0.91207 1.00552 0.81066 1.19385 0.97526 0.94093 0.94883 1.21019 1.04204 0.93576 0.99528 1.21166 0.94357 1.00234 0.92985 1.21384 1.06750 0.93347 1.03722 1.19860 0.91366 0.91519 0.91195 1.83949 1.61157 1.38855 1.30008 1.21791 1.37326 0.95108 0.94679 0.87844 1.26584 0.96914 0.96243 1.02362 1.70181 1.41368 1.08015 1.36370 0.84654 0.78912 0.77627 0.75083 1.17968 1.19950 1.18216 1.20234 1.03812 0.99870 0.95957 0.89702 0.92797 0.93750 0.89904 0.91853 0.89205 0.93444 0.87470 0.92215 0.90552 0.87399 0.73458 0.75122 0.89287 0.92004 0.83201 0.83260 0.86149 0.91925 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.53 71.98 0.69 -1.88 16 2 C 0.08 1.05 3.34 30.60 0.10 1.15 16 3 C -0.15 -1.90 9.56 71.98 0.69 -1.21 16 4 O -0.41 -8.02 9.95 -144.34 -1.44 -9.46 16 5 C 0.07 0.86 6.13 71.98 0.44 1.30 16 6 C 0.03 0.36 6.61 71.98 0.48 0.83 16 7 O -0.15 -3.84 11.07 -16.47 -0.18 -4.02 16 8 N -0.60 -13.56 6.39 -184.74 -1.18 -14.74 16 9 C 0.72 21.18 8.71 179.05 1.56 22.74 16 10 O -0.63 -24.88 16.75 13.37 0.22 -24.65 16 11 N -0.72 -17.65 5.55 -482.30 -2.68 -20.32 16 12 C 0.20 5.42 5.80 85.63 0.50 5.92 16 13 C -0.06 -1.80 5.25 -19.88 -0.10 -1.91 16 14 C -0.16 -4.49 9.70 22.30 0.22 -4.27 16 15 C -0.07 -2.10 10.04 22.25 0.22 -1.88 16 16 C -0.23 -9.37 9.17 22.39 0.21 -9.16 16 17 C 0.11 5.25 6.65 22.58 0.15 5.40 16 18 O -0.23 -13.68 9.76 -22.74 -0.22 -13.90 16 19 C -0.41 -23.46 9.49 67.92 0.64 -22.81 16 20 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 21 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.17 13.67 21.61 0.30 -55.88 16 23 Si 1.02 42.03 29.55 68.60 2.03 44.06 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 C -0.18 -7.23 9.65 22.39 0.22 -7.01 16 28 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.80 7.87 -2.39 -0.02 0.78 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.73 7.79 -2.39 -0.02 0.71 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.63 8.08 -2.39 -0.02 0.61 16 36 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.42 5.76 8.56 -92.70 -0.79 4.96 16 40 H 0.41 8.09 8.48 -92.71 -0.79 7.31 16 41 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 42 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 45 H 0.12 4.94 5.64 -2.91 -0.02 4.93 16 46 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -83.58 404.27 2.73 -80.85 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.58 Total: 31.72 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 6.47 Total: -13.65 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -3.56 Total: -90.94 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -1.62 Total: -52.04 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -83.58 2.73 -80.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117662884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.143 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds