Wall clock time and date at job start Tue Mar 31 2020 21:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 S 1.81401 * 109.46843 * 119.99655 * 2 1 3 5 5 C 1.81403 * 102.99894 * 175.00041 * 4 2 1 6 6 C 1.50702 * 109.46795 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00343 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99604 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99861 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47033 * 180.02562 * 9 8 6 11 11 C 1.40071 * 126.12777 * 259.87623 * 10 9 8 12 12 N 1.31008 * 108.25933 * 179.83696 * 11 10 9 13 13 N 1.39752 * 108.17587 * 0.36260 * 12 11 10 14 14 C 1.34642 * 126.12436 * 80.00440 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68600 * 14 10 9 16 16 N 1.47502 * 107.00120 * 169.72279 * 15 14 10 17 17 C 1.36940 * 121.01057 * 222.89486 * 16 15 14 18 18 H 1.08000 * 119.99632 * 155.91392 * 17 16 15 19 19 C 1.38810 * 120.00291 * 335.92287 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.44867 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45215 * 19 17 16 22 22 H 1.48499 * 109.46896 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46773 * 119.99548 * 21 19 17 24 24 H 1.48494 * 109.47008 * 239.99575 * 21 19 17 25 25 C 1.47090 * 117.97851 * 42.91837 * 16 15 14 26 26 C 1.46544 * 127.31949 * 179.45101 * 13 12 11 27 27 H 1.09001 * 109.47366 * 300.00547 * 1 2 3 28 28 H 1.09005 * 109.46646 * 60.00166 * 1 2 3 29 29 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47366 * 239.99453 * 2 1 3 31 31 H 1.09001 * 109.47455 * 59.99507 * 3 2 1 32 32 H 1.09005 * 109.46996 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47232 * 299.99474 * 3 2 1 34 34 H 1.08997 * 109.46643 * 60.00436 * 5 4 2 35 35 H 1.08991 * 109.46947 * 300.00023 * 5 4 2 36 36 H 0.96995 * 120.00250 * 359.97438 * 8 6 5 37 37 H 1.08996 * 109.47393 * 60.00295 * 9 8 6 38 38 H 1.09004 * 109.47674 * 300.00146 * 9 8 6 39 39 H 1.08007 * 125.86781 * 0.03833 * 11 10 9 40 40 H 1.09005 * 109.94596 * 289.08950 * 15 14 10 41 41 H 1.08995 * 109.95446 * 50.34958 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.51221 * 56.33698 * 25 16 15 44 44 H 1.08996 * 109.51216 * 176.48957 * 25 16 15 45 45 H 1.09003 * 109.51603 * 41.61815 * 26 13 12 46 46 H 1.09004 * 109.51358 * 281.47209 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9308 -0.8874 1.2291 6 6 4.5894 -1.5773 2.3959 7 8 3.9136 -2.0054 3.3075 8 7 5.9293 -1.7194 2.4258 9 6 6.5696 -2.3896 3.5603 10 6 8.0617 -2.4165 3.3508 11 6 8.8105 -3.5041 2.8833 12 7 10.0691 -3.1441 2.8320 13 7 10.1624 -1.8211 3.2723 14 6 8.9142 -1.4003 3.5818 15 6 8.5909 -0.0149 4.0892 16 7 9.8744 0.6375 4.4095 17 6 10.0248 1.3750 5.5535 18 1 11.0072 1.5168 5.9793 19 6 8.9147 1.9400 6.1661 20 7 7.7783 2.0359 5.5091 21 14 9.0337 2.5643 7.9226 22 1 10.4096 2.3412 8.4350 23 1 8.7226 4.0160 7.9541 24 1 8.0636 1.8315 8.7752 25 6 10.9878 0.4723 3.4626 26 6 11.3761 -1.0087 3.3940 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 4.3052 0.1333 1.1525 35 1 4.1590 -1.4281 0.3107 36 1 6.4696 -1.3780 1.6963 37 1 6.1948 -3.4101 3.6382 38 1 6.3417 -1.8478 4.4783 39 1 8.4173 -4.4719 2.6090 40 1 8.0685 0.5511 3.3178 41 1 7.9739 -0.0815 4.9851 42 1 7.0026 2.4311 5.9370 43 1 10.6791 0.8138 2.4745 44 1 11.8429 1.0578 3.8003 45 1 12.0157 -1.1776 2.5277 46 1 11.9110 -1.2872 4.3021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128213721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:30 Heat of formation + Delta-G solvation = 60.263977 kcal Electronic energy + Delta-G solvation = -27035.391331 eV Core-core repulsion = 23281.566321 eV Total energy + Delta-G solvation = -3753.825010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02961 -39.26382 -36.34618 -34.98860 -34.77132 -33.03283 -31.52180 -30.36352 -30.17119 -28.47416 -27.37041 -26.01660 -24.68545 -23.49986 -22.13238 -21.79697 -20.41532 -20.15634 -18.46315 -17.20835 -16.75346 -16.50699 -16.20562 -15.67455 -15.51716 -15.26194 -14.86933 -14.58772 -14.28118 -13.94864 -13.79201 -13.71460 -13.42020 -13.29918 -13.25611 -13.05160 -12.52266 -12.49078 -12.26211 -11.75132 -11.68639 -11.63130 -11.51588 -11.38385 -11.32671 -11.01599 -10.90635 -10.75119 -10.22226 -10.20153 -10.10593 -9.84542 -9.81251 -8.94243 -8.81017 -8.58857 -7.97266 -7.67738 -7.11483 -6.03985 -3.46832 1.40070 2.38344 2.45208 2.77580 2.91576 2.98057 3.27825 3.36274 3.37777 3.70567 4.29539 4.53886 4.62571 4.85418 4.91896 4.94266 5.01030 5.03405 5.15019 5.18015 5.33254 5.34353 5.44736 5.49316 5.50563 5.52489 5.57984 5.58815 5.68484 5.82592 5.87882 5.93639 6.10693 6.18962 6.33705 6.37871 6.50484 6.64779 6.87189 7.04712 7.11157 7.54292 7.57812 7.68682 8.06420 8.19746 8.37174 8.89402 9.51812 10.04054 11.07002 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.003198 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.731596 B = 8752.978029 C =10481.641056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.083 4.083 3 C -0.150 4.150 4 S -0.180 6.180 5 C -0.128 4.128 6 C 0.529 3.471 7 O -0.525 6.525 8 N -0.714 5.714 9 C 0.211 3.789 10 C -0.289 4.289 11 C 0.057 3.943 12 N -0.318 5.318 13 N -0.358 5.358 14 C 0.120 3.880 15 C 0.231 3.769 16 N -0.596 5.596 17 C -0.264 4.264 18 H 0.074 0.926 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.286 1.286 25 C 0.129 3.871 26 C 0.113 3.887 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.259 0.741 43 H 0.035 0.965 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 -4.336 -12.913 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.212 4.212 3 C -0.209 4.209 4 S 0.046 5.954 5 C -0.279 4.279 6 C 0.313 3.687 7 O -0.401 6.401 8 N -0.366 5.366 9 C 0.088 3.912 10 C -0.301 4.301 11 C -0.130 4.130 12 N -0.138 5.138 13 N -0.139 5.139 14 C -0.012 4.012 15 C 0.104 3.896 16 N -0.319 5.319 17 C -0.393 4.393 18 H 0.092 0.908 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.212 1.212 25 C 0.001 3.999 26 C -0.010 4.010 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.193 0.807 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.319 -5.253 -11.583 14.201 hybrid contribution 0.433 1.168 -0.420 1.315 sum -5.885 -4.085 -12.003 13.978 Atomic orbital electron populations 1.21561 0.91754 1.02911 1.02703 1.23245 0.99998 0.98990 0.98936 1.22116 1.01262 0.94517 1.02968 1.87490 1.01657 1.76325 1.29885 1.23526 0.97277 1.05442 1.01669 1.19559 0.82589 0.79727 0.86854 1.90740 1.63070 1.48800 1.37503 1.46100 1.05975 1.59858 1.24674 1.19326 0.86271 0.97096 0.88523 1.19416 0.95513 0.95068 1.20125 1.23681 0.90543 0.99183 0.99603 1.77176 1.19816 0.93699 1.23072 1.48505 1.06802 1.09101 1.49468 1.22597 0.84787 0.99131 0.94670 1.19921 0.88686 0.80803 1.00175 1.44215 1.07713 1.57975 1.22004 1.19195 0.94342 1.26280 0.99486 0.90822 1.25038 0.96623 0.98108 0.99313 1.69938 1.01932 1.47074 1.35660 0.86140 0.77773 0.78212 0.84134 1.20185 1.21426 1.21194 1.21273 0.93780 0.90572 0.94310 1.22555 0.83853 0.92658 1.01963 0.91572 0.91276 0.91686 0.89738 0.91108 0.92457 0.91944 0.87122 0.87605 0.76641 0.91199 0.90694 0.80729 0.92636 0.87264 0.93045 0.94651 0.89702 0.90185 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.20 37.16 0.34 -0.67 16 2 C -0.08 -0.74 3.38 -26.73 -0.09 -0.83 16 3 C -0.15 -1.26 9.10 37.16 0.34 -0.92 16 4 S -0.18 -2.29 20.29 -107.50 -2.18 -4.48 16 5 C -0.13 -1.48 6.12 36.01 0.22 -1.26 16 6 C 0.53 7.99 7.85 -10.98 -0.09 7.91 16 7 O -0.52 -10.03 15.86 5.56 0.09 -9.95 16 8 N -0.71 -10.07 5.55 -61.47 -0.34 -10.41 16 9 C 0.21 3.34 5.95 -5.20 -0.03 3.31 16 10 C -0.29 -4.88 5.46 -105.21 -0.57 -5.46 16 11 C 0.06 0.90 11.97 -17.22 -0.21 0.70 16 12 N -0.32 -5.75 12.61 30.70 0.39 -5.37 16 13 N -0.36 -6.72 4.03 -56.94 -0.23 -6.95 16 14 C 0.12 2.32 6.71 -82.17 -0.55 1.77 16 15 C 0.23 5.09 5.11 -4.48 -0.02 5.07 16 16 N -0.60 -13.65 3.01 -172.96 -0.52 -14.17 16 17 C -0.26 -6.68 9.66 -15.06 -0.15 -6.83 16 18 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 19 C 0.01 0.22 5.00 -17.43 -0.09 0.14 16 20 N -0.90 -24.32 11.07 55.49 0.61 -23.71 16 21 Si 0.91 20.72 29.58 -169.99 -5.03 15.69 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.13 2.36 6.49 -3.59 -0.02 2.33 16 26 C 0.11 1.89 7.44 -3.88 -0.03 1.86 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.49 6.92 -51.93 -0.36 0.13 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.11 1.16 7.14 -51.93 -0.37 0.79 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.40 4.92 8.46 -40.82 -0.35 4.58 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.18 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.11 2.74 6.46 -51.93 -0.34 2.41 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -31.03 389.80 -9.57 -40.61 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.29 Total: 5.71 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.95 Total: 7.13 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.09 Total: -60.59 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.18 Total: -4.48 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.03 -9.57 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128213721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.873 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds