Wall clock time and date at job start Tue Mar 31 2020 21:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47106 * 2 1 4 4 S 1.81401 * 109.46843 * 119.99655 * 2 1 3 5 5 C 1.81403 * 102.99894 * 175.00041 * 4 2 1 6 6 C 1.50702 * 109.46795 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00343 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99604 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99861 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47033 * 180.02562 * 9 8 6 11 11 C 1.40071 * 126.12777 * 259.87623 * 10 9 8 12 12 N 1.31008 * 108.25933 * 179.83696 * 11 10 9 13 13 N 1.39752 * 108.17587 * 0.36260 * 12 11 10 14 14 C 1.34642 * 126.12436 * 80.00440 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68600 * 14 10 9 16 16 N 1.47502 * 107.00120 * 169.72279 * 15 14 10 17 17 C 1.36940 * 121.01057 * 222.89486 * 16 15 14 18 18 H 1.08000 * 119.99632 * 155.91392 * 17 16 15 19 19 C 1.38810 * 120.00291 * 335.92287 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.44867 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45215 * 19 17 16 22 22 H 1.48499 * 109.46896 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46773 * 119.99548 * 21 19 17 24 24 H 1.48494 * 109.47008 * 239.99575 * 21 19 17 25 25 C 1.47090 * 117.97851 * 42.91837 * 16 15 14 26 26 C 1.46544 * 127.31949 * 179.45101 * 13 12 11 27 27 H 1.09001 * 109.47366 * 300.00547 * 1 2 3 28 28 H 1.09005 * 109.46646 * 60.00166 * 1 2 3 29 29 H 1.08999 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47366 * 239.99453 * 2 1 3 31 31 H 1.09001 * 109.47455 * 59.99507 * 3 2 1 32 32 H 1.09005 * 109.46996 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47232 * 299.99474 * 3 2 1 34 34 H 1.08997 * 109.46643 * 60.00436 * 5 4 2 35 35 H 1.08991 * 109.46947 * 300.00023 * 5 4 2 36 36 H 0.96995 * 120.00250 * 359.97438 * 8 6 5 37 37 H 1.08996 * 109.47393 * 60.00295 * 9 8 6 38 38 H 1.09004 * 109.47674 * 300.00146 * 9 8 6 39 39 H 1.08007 * 125.86781 * 0.03833 * 11 10 9 40 40 H 1.09005 * 109.94596 * 289.08950 * 15 14 10 41 41 H 1.08995 * 109.95446 * 50.34958 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.51221 * 56.33698 * 25 16 15 44 44 H 1.08996 * 109.51216 * 176.48957 * 25 16 15 45 45 H 1.09003 * 109.51603 * 41.61815 * 26 13 12 46 46 H 1.09004 * 109.51358 * 281.47209 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 3.9308 -0.8874 1.2291 6 6 4.5894 -1.5773 2.3959 7 8 3.9136 -2.0054 3.3075 8 7 5.9293 -1.7194 2.4258 9 6 6.5696 -2.3896 3.5603 10 6 8.0617 -2.4165 3.3508 11 6 8.8105 -3.5041 2.8833 12 7 10.0691 -3.1441 2.8320 13 7 10.1624 -1.8211 3.2723 14 6 8.9142 -1.4003 3.5818 15 6 8.5909 -0.0149 4.0892 16 7 9.8744 0.6375 4.4095 17 6 10.0248 1.3750 5.5535 18 1 11.0072 1.5168 5.9793 19 6 8.9147 1.9400 6.1661 20 7 7.7783 2.0359 5.5091 21 14 9.0337 2.5643 7.9226 22 1 10.4096 2.3412 8.4350 23 1 8.7226 4.0160 7.9541 24 1 8.0636 1.8315 8.7752 25 6 10.9878 0.4723 3.4626 26 6 11.3761 -1.0087 3.3940 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 4.3052 0.1333 1.1525 35 1 4.1590 -1.4281 0.3107 36 1 6.4696 -1.3780 1.6963 37 1 6.1948 -3.4101 3.6382 38 1 6.3417 -1.8478 4.4783 39 1 8.4173 -4.4719 2.6090 40 1 8.0685 0.5511 3.3178 41 1 7.9739 -0.0815 4.9851 42 1 7.0026 2.4311 5.9370 43 1 10.6791 0.8138 2.4745 44 1 11.8429 1.0578 3.8003 45 1 12.0157 -1.1776 2.5277 46 1 11.9110 -1.2872 4.3021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128213721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:29 Heat of formation + Delta-G solvation = 40.889138 kcal Electronic energy + Delta-G solvation = -27036.231487 eV Core-core repulsion = 23281.566321 eV Total energy + Delta-G solvation = -3754.665166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44186 -40.52404 -37.97835 -36.15893 -35.61678 -34.64934 -33.05430 -31.88774 -31.45211 -29.79610 -28.07742 -27.71071 -26.09400 -25.10714 -23.33864 -22.84961 -21.65115 -21.53233 -19.99040 -18.55162 -18.39960 -17.65264 -17.46197 -16.87983 -16.80018 -16.54348 -16.33378 -15.68680 -15.51947 -15.28073 -15.17744 -15.00841 -14.77641 -14.60854 -14.47249 -14.09596 -13.95636 -13.52442 -13.35965 -13.12254 -13.06465 -12.95756 -12.77034 -12.63157 -12.41674 -12.32711 -12.19579 -12.08943 -12.04102 -11.89447 -11.62690 -11.13131 -10.79583 -10.64925 -10.08661 -10.07215 -9.40867 -8.96086 -8.66238 -7.99958 -5.43203 0.50067 0.93041 1.44000 1.48140 1.55548 1.57848 1.59603 1.61227 1.66745 2.43758 2.50678 3.19561 3.42424 3.59835 3.75889 3.82588 3.88722 3.97213 4.07372 4.14003 4.19365 4.23443 4.26467 4.36898 4.37007 4.46191 4.74161 4.75210 4.78228 4.80188 4.87051 4.87980 4.92749 4.97173 5.01536 5.22921 5.27193 5.28246 5.35997 5.41661 5.58125 5.74726 6.08194 6.19448 6.52276 6.79543 6.98309 7.20144 7.64686 8.15443 9.09292 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.003198 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.731596 B = 8752.978029 C =10481.641056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.150 4.150 4 S -0.254 6.254 5 C -0.111 4.111 6 C 0.524 3.476 7 O -0.570 6.570 8 N -0.705 5.705 9 C 0.218 3.782 10 C -0.274 4.274 11 C 0.068 3.932 12 N -0.326 5.326 13 N -0.366 5.366 14 C 0.096 3.904 15 C 0.250 3.750 16 N -0.616 5.616 17 C -0.266 4.266 18 H 0.079 0.921 19 C -0.042 4.042 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.128 3.872 26 C 0.117 3.883 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.139 0.861 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.215 0.785 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.252 0.748 43 H 0.041 0.959 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -5.130 -15.038 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C -0.208 4.208 4 S -0.029 6.029 5 C -0.261 4.261 6 C 0.310 3.690 7 O -0.449 6.449 8 N -0.356 5.356 9 C 0.094 3.906 10 C -0.287 4.287 11 C -0.119 4.119 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.035 4.035 15 C 0.123 3.877 16 N -0.340 5.340 17 C -0.395 4.395 18 H 0.097 0.903 19 C -0.238 4.238 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.223 1.223 25 C 0.002 3.998 26 C -0.006 4.006 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.246 0.754 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.232 0.768 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.293 -6.042 -13.743 15.918 hybrid contribution 0.145 1.383 0.178 1.402 sum -5.148 -4.659 -13.565 15.239 Atomic orbital electron populations 1.21599 0.90931 1.03021 1.03347 1.23307 1.00426 0.98693 0.96784 1.22114 1.01218 0.94172 1.03339 1.87764 1.03582 1.77617 1.33891 1.23429 0.95624 1.06003 1.01076 1.20159 0.82476 0.79080 0.87267 1.90721 1.64020 1.50752 1.39412 1.45961 1.05957 1.59391 1.24334 1.19154 0.86027 0.97501 0.87951 1.19503 0.95589 0.94811 1.18767 1.24253 0.89498 1.00084 0.98023 1.77172 1.20844 0.93181 1.23408 1.48688 1.06787 1.09608 1.49707 1.22219 0.86125 0.98481 0.96721 1.19348 0.88080 0.82393 0.97902 1.44447 1.08933 1.57961 1.22615 1.19510 0.94391 1.25280 1.00341 0.90310 1.25697 0.96637 0.99227 1.02265 1.70079 1.02279 1.48496 1.36658 0.85267 0.77824 0.77218 0.80505 1.18906 1.21648 1.22291 1.21439 0.92714 0.92187 0.93504 1.22542 0.83588 0.90975 1.03482 0.92602 0.88802 0.91893 0.87932 0.92477 0.92572 0.89747 0.85942 0.84265 0.75365 0.89725 0.93922 0.76830 0.94569 0.91129 0.93883 0.94049 0.88272 0.86928 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.20 71.98 0.66 -1.17 16 2 C -0.06 -1.03 3.38 30.59 0.10 -0.92 16 3 C -0.15 -2.26 9.10 71.98 0.66 -1.60 16 4 S -0.25 -6.49 20.29 -56.49 -1.15 -7.63 16 5 C -0.11 -2.45 6.12 71.24 0.44 -2.01 16 6 C 0.52 15.88 7.85 87.66 0.69 16.57 16 7 O -0.57 -22.46 15.86 -3.03 -0.05 -22.51 16 8 N -0.70 -19.60 5.55 -466.79 -2.59 -22.19 16 9 C 0.22 6.91 5.95 85.63 0.51 7.42 16 10 C -0.27 -9.00 5.46 -20.24 -0.11 -9.11 16 11 C 0.07 1.97 11.97 85.26 1.02 2.99 16 12 N -0.33 -10.93 12.61 -56.79 -0.72 -11.65 16 13 N -0.37 -13.15 4.03 -334.04 -1.35 -14.50 16 14 C 0.10 3.69 6.71 41.30 0.28 3.97 16 15 C 0.25 11.37 5.11 85.55 0.44 11.80 16 16 N -0.62 -28.38 3.01 -701.13 -2.11 -30.50 16 17 C -0.27 -13.53 9.66 84.03 0.81 -12.71 16 18 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16 19 C -0.04 -2.22 5.00 84.86 0.42 -1.80 16 20 N -0.93 -52.03 11.07 21.65 0.24 -51.79 16 21 Si 0.96 43.36 29.58 68.60 2.03 45.39 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 25 C 0.13 4.53 6.49 86.35 0.56 5.09 16 26 C 0.12 3.65 7.44 86.46 0.64 4.29 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 0.86 6.92 -2.38 -0.02 0.84 16 33 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.12 2.43 7.14 -2.39 -0.02 2.41 16 35 H 0.14 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.41 9.66 8.46 -92.71 -0.78 8.87 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.22 4.37 8.06 -2.91 -0.02 4.34 16 40 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.07 3.75 6.46 -2.39 -0.02 3.73 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 3.17 7.94 -2.39 -0.02 3.15 16 45 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.47 389.80 1.63 -67.84 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.20 Total: 24.73 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 7.12 Total: 22.80 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -6.52 Total: -130.62 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.05 Total: -22.51 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -1.15 Total: -7.63 kcal Total: -69.47 1.63 -67.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128213721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.727 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds