Wall clock time and date at job start Tue Mar 31 2020 21:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 S 1.81400 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.81403 * 103.00013 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46937 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00201 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99603 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.46729 * 179.97438 * 9 8 6 11 11 C 1.40073 * 126.12313 * 259.88192 * 10 9 8 12 12 N 1.31006 * 108.25295 * 179.83823 * 11 10 9 13 13 N 1.39749 * 108.17885 * 0.35335 * 12 11 10 14 14 C 1.34642 * 126.12567 * 79.99778 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68657 * 14 10 9 16 16 N 1.47494 * 107.00460 * 169.71753 * 15 14 10 17 17 C 1.36935 * 121.01655 * 222.90206 * 16 15 14 18 18 H 1.08003 * 120.00000 * 155.90950 * 17 16 15 19 19 C 1.38810 * 120.00058 * 335.91821 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.45450 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45798 * 19 17 16 22 22 H 1.48501 * 109.46987 * 89.99326 * 21 19 17 23 23 H 1.48493 * 109.47222 * 209.99609 * 21 19 17 24 24 H 1.48502 * 109.46853 * 330.00010 * 21 19 17 25 25 C 1.47090 * 117.97260 * 42.92063 * 16 15 14 26 26 C 1.46556 * 127.32195 * 179.45647 * 13 12 11 27 27 H 1.08994 * 109.47630 * 300.00082 * 1 2 3 28 28 H 1.09006 * 109.46534 * 60.00766 * 1 2 3 29 29 H 1.09005 * 109.46621 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.48069 * 239.99831 * 2 1 3 31 31 H 1.09000 * 109.47174 * 119.99460 * 2 1 3 32 32 H 1.09000 * 109.47321 * 59.99561 * 3 2 1 33 33 H 1.09000 * 109.47150 * 299.99910 * 3 2 1 34 34 H 1.09002 * 109.47055 * 60.00265 * 5 4 3 35 35 H 1.08995 * 109.46888 * 300.00234 * 5 4 3 36 36 H 0.96995 * 120.00182 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47524 * 60.00106 * 9 8 6 38 38 H 1.08991 * 109.47107 * 299.99056 * 9 8 6 39 39 H 1.08007 * 125.87116 * 0.02562 * 11 10 9 40 40 H 1.08997 * 109.95132 * 289.09278 * 15 14 10 41 41 H 1.09000 * 109.94610 * 50.34741 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.51221 * 56.33544 * 25 16 15 44 44 H 1.09002 * 109.51614 * 176.49615 * 25 16 15 45 45 H 1.09005 * 109.50594 * 41.61326 * 26 13 12 46 46 H 1.08998 * 109.50897 * 281.47318 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2101 -0.0001 6 6 5.7594 3.3800 -0.0002 7 8 6.4804 2.4048 0.0007 8 7 6.2974 4.6157 -0.0003 9 6 7.7531 4.7808 -0.0010 10 6 8.0920 6.2493 -0.0016 11 6 8.4710 7.0088 -1.1159 12 7 8.6794 8.2405 -0.7212 13 7 8.4481 8.3022 0.6556 14 6 8.0870 7.0656 1.0692 15 6 7.7422 6.7194 2.4983 16 7 8.1250 7.8779 3.3271 17 6 8.7632 7.7072 4.5266 18 1 9.3719 8.5018 4.9323 19 6 8.6278 6.5129 5.2210 20 7 7.6671 5.6717 4.9023 21 14 9.8092 6.0998 6.6078 22 1 9.2685 6.6189 7.8897 23 1 9.9698 4.6263 6.6987 24 1 11.1283 6.7258 6.3373 25 6 7.8001 9.2221 2.8261 26 6 8.5701 9.4754 1.5254 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.8427 3.6803 0.8895 35 1 3.8434 3.6791 -0.8905 36 1 5.7208 5.3957 -0.0007 37 1 8.1716 4.3113 -0.8912 38 1 8.1724 4.3113 0.8887 39 1 8.5709 6.6427 -2.1270 40 1 6.6716 6.5353 2.5885 41 1 8.2999 5.8371 2.8122 42 1 7.5722 4.8373 5.3878 43 1 6.7293 9.2902 2.6344 44 1 8.0859 9.9666 3.5692 45 1 8.1548 10.3477 1.0205 46 1 9.6213 9.6520 1.7532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128240895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:33 Heat of formation + Delta-G solvation = 57.735815 kcal Electronic energy + Delta-G solvation = -26700.231720 eV Core-core repulsion = 22946.297080 eV Total energy + Delta-G solvation = -3753.934640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03071 -39.27064 -36.34563 -34.95551 -34.77718 -33.03393 -31.52506 -30.35586 -30.16363 -28.44503 -27.49868 -26.02150 -24.69429 -23.49946 -21.99298 -21.78652 -20.41338 -20.15621 -18.46378 -17.19669 -16.75233 -16.49744 -16.07739 -15.83147 -15.50034 -15.33612 -15.15995 -14.62663 -14.01603 -13.92938 -13.80422 -13.74015 -13.58395 -13.36027 -13.27299 -13.15458 -12.80309 -12.50161 -12.22927 -11.75401 -11.71259 -11.63451 -11.40928 -11.33034 -11.10770 -11.00478 -10.90455 -10.74979 -10.23043 -10.22336 -10.10665 -9.98616 -9.85420 -8.93778 -8.81465 -8.58789 -7.97314 -7.68346 -7.11165 -6.03767 -3.46490 1.37702 2.38451 2.46939 2.76876 2.91320 2.97980 3.27637 3.36393 3.37579 3.69940 4.29807 4.54263 4.60613 4.84576 4.91831 4.93705 4.98416 5.03569 5.13134 5.16434 5.18065 5.33833 5.34335 5.41005 5.49285 5.52444 5.58092 5.68477 5.69490 5.78882 5.82560 5.93367 6.10466 6.18990 6.33656 6.37965 6.50369 6.64304 6.87229 7.04658 7.11145 7.54180 7.57513 7.68148 8.06655 8.19762 8.36529 8.89530 9.52035 10.04300 11.07209 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.002898 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.349980 B = 9660.373535 C =11410.496045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.108 4.108 4 S -0.186 6.186 5 C -0.127 4.127 6 C 0.529 3.471 7 O -0.525 6.525 8 N -0.714 5.714 9 C 0.211 3.789 10 C -0.289 4.289 11 C 0.057 3.943 12 N -0.318 5.318 13 N -0.358 5.358 14 C 0.120 3.880 15 C 0.231 3.769 16 N -0.596 5.596 17 C -0.265 4.265 18 H 0.073 0.927 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.278 1.278 25 C 0.129 3.871 26 C 0.113 3.887 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.400 0.600 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.176 0.824 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.260 0.740 43 H 0.035 0.965 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 -2.668 -10.809 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.256 4.256 4 S 0.041 5.959 5 C -0.278 4.278 6 C 0.313 3.687 7 O -0.401 6.401 8 N -0.366 5.366 9 C 0.088 3.912 10 C -0.301 4.301 11 C -0.130 4.130 12 N -0.138 5.138 13 N -0.139 5.139 14 C -0.012 4.012 15 C 0.104 3.896 16 N -0.319 5.319 17 C -0.394 4.394 18 H 0.091 0.909 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.204 1.204 25 C 0.001 3.999 26 C -0.010 4.010 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.193 0.807 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.431 -3.036 -10.964 14.777 hybrid contribution -0.749 0.676 0.890 1.346 sum -10.180 -2.360 -10.074 14.515 Atomic orbital electron populations 1.21767 0.94801 1.02054 1.02010 1.21221 0.95883 0.94012 1.03480 1.23570 0.95658 1.01595 1.04820 1.87511 1.03993 1.06352 1.98050 1.23505 0.98265 0.99086 1.06991 1.19547 0.88550 0.83721 0.76921 1.90742 1.61939 1.38482 1.48932 1.46101 1.08578 1.07175 1.74741 1.19329 0.78841 0.90760 1.02281 1.19417 1.21228 0.96673 0.92816 1.23682 0.99545 0.90674 0.99117 1.77173 1.25297 1.20519 0.90772 1.48508 1.51757 1.08490 1.05123 1.22597 0.94267 0.85156 0.99154 1.19920 0.99204 0.92233 0.78237 1.44200 1.68451 0.98923 1.20301 1.19136 1.22638 1.01508 0.96070 0.90897 1.25038 0.97357 0.98497 0.98193 1.69927 1.30154 1.11551 1.42967 0.86212 0.80728 0.77735 0.81599 1.21155 1.21190 1.20378 1.21273 0.96239 0.90274 0.92149 1.22558 1.02684 0.84839 0.90949 0.92482 0.92609 0.92184 0.91012 0.90872 0.90090 0.90287 0.87106 0.87541 0.76626 0.91199 0.90678 0.80725 0.92631 0.87264 0.92992 0.94654 0.89706 0.90184 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.11 -0.85 5.94 -26.73 -0.16 -1.01 16 3 C -0.11 -0.95 5.94 37.16 0.22 -0.73 16 4 S -0.19 -2.37 20.87 -107.50 -2.24 -4.61 16 5 C -0.13 -1.46 6.42 36.01 0.23 -1.23 16 6 C 0.53 7.97 7.85 -10.99 -0.09 7.89 16 7 O -0.52 -10.02 15.86 5.56 0.09 -9.94 16 8 N -0.71 -10.04 5.55 -61.47 -0.34 -10.38 16 9 C 0.21 3.34 5.95 -5.19 -0.03 3.31 16 10 C -0.29 -4.88 5.46 -105.20 -0.57 -5.46 16 11 C 0.06 0.90 11.97 -17.22 -0.21 0.70 16 12 N -0.32 -5.75 12.61 30.70 0.39 -5.37 16 13 N -0.36 -6.72 4.03 -56.93 -0.23 -6.95 16 14 C 0.12 2.32 6.71 -82.17 -0.55 1.77 16 15 C 0.23 5.09 5.11 -4.49 -0.02 5.07 16 16 N -0.60 -13.65 3.01 -172.97 -0.52 -14.17 16 17 C -0.26 -6.70 9.67 -15.06 -0.15 -6.84 16 18 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 19 C 0.01 0.22 5.00 -17.43 -0.09 0.14 16 20 N -0.90 -24.33 11.07 55.49 0.61 -23.72 16 21 Si 0.91 20.73 29.58 -169.99 -5.03 15.70 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.13 2.36 6.49 -3.59 -0.02 2.34 16 26 C 0.11 1.89 7.44 -3.88 -0.03 1.86 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.11 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 4.91 8.46 -40.82 -0.35 4.56 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.18 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.11 2.74 6.46 -51.93 -0.34 2.40 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 393.03 15.07 5.92 5.92 Total: -1.00 -31.06 393.03 -9.85 -40.92 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.41 Total: 5.34 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.10 Total: 7.26 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.09 Total: -60.58 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.24 Total: -4.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.06 -9.85 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128240895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.652 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds