Wall clock time and date at job start Tue Mar 31 2020 21:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 S 1.81400 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.81403 * 103.00013 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46937 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00201 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99603 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.46729 * 179.97438 * 9 8 6 11 11 C 1.40073 * 126.12313 * 259.88192 * 10 9 8 12 12 N 1.31006 * 108.25295 * 179.83823 * 11 10 9 13 13 N 1.39749 * 108.17885 * 0.35335 * 12 11 10 14 14 C 1.34642 * 126.12567 * 79.99778 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68657 * 14 10 9 16 16 N 1.47494 * 107.00460 * 169.71753 * 15 14 10 17 17 C 1.36935 * 121.01655 * 222.90206 * 16 15 14 18 18 H 1.08003 * 120.00000 * 155.90950 * 17 16 15 19 19 C 1.38810 * 120.00058 * 335.91821 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.45450 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45798 * 19 17 16 22 22 H 1.48501 * 109.46987 * 89.99326 * 21 19 17 23 23 H 1.48493 * 109.47222 * 209.99609 * 21 19 17 24 24 H 1.48502 * 109.46853 * 330.00010 * 21 19 17 25 25 C 1.47090 * 117.97260 * 42.92063 * 16 15 14 26 26 C 1.46556 * 127.32195 * 179.45647 * 13 12 11 27 27 H 1.08994 * 109.47630 * 300.00082 * 1 2 3 28 28 H 1.09006 * 109.46534 * 60.00766 * 1 2 3 29 29 H 1.09005 * 109.46621 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.48069 * 239.99831 * 2 1 3 31 31 H 1.09000 * 109.47174 * 119.99460 * 2 1 3 32 32 H 1.09000 * 109.47321 * 59.99561 * 3 2 1 33 33 H 1.09000 * 109.47150 * 299.99910 * 3 2 1 34 34 H 1.09002 * 109.47055 * 60.00265 * 5 4 3 35 35 H 1.08995 * 109.46888 * 300.00234 * 5 4 3 36 36 H 0.96995 * 120.00182 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47524 * 60.00106 * 9 8 6 38 38 H 1.08991 * 109.47107 * 299.99056 * 9 8 6 39 39 H 1.08007 * 125.87116 * 0.02562 * 11 10 9 40 40 H 1.08997 * 109.95132 * 289.09278 * 15 14 10 41 41 H 1.09000 * 109.94610 * 50.34741 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.51221 * 56.33544 * 25 16 15 44 44 H 1.09002 * 109.51614 * 176.49615 * 25 16 15 45 45 H 1.09005 * 109.50594 * 41.61326 * 26 13 12 46 46 H 1.08998 * 109.50897 * 281.47318 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2101 -0.0001 6 6 5.7594 3.3800 -0.0002 7 8 6.4804 2.4048 0.0007 8 7 6.2974 4.6157 -0.0003 9 6 7.7531 4.7808 -0.0010 10 6 8.0920 6.2493 -0.0016 11 6 8.4710 7.0088 -1.1159 12 7 8.6794 8.2405 -0.7212 13 7 8.4481 8.3022 0.6556 14 6 8.0870 7.0656 1.0692 15 6 7.7422 6.7194 2.4983 16 7 8.1250 7.8779 3.3271 17 6 8.7632 7.7072 4.5266 18 1 9.3719 8.5018 4.9323 19 6 8.6278 6.5129 5.2210 20 7 7.6671 5.6717 4.9023 21 14 9.8092 6.0998 6.6078 22 1 9.2685 6.6189 7.8897 23 1 9.9698 4.6263 6.6987 24 1 11.1283 6.7258 6.3373 25 6 7.8001 9.2221 2.8261 26 6 8.5701 9.4754 1.5254 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.8427 3.6803 0.8895 35 1 3.8434 3.6791 -0.8905 36 1 5.7208 5.3957 -0.0007 37 1 8.1716 4.3113 -0.8912 38 1 8.1724 4.3113 0.8887 39 1 8.5709 6.6427 -2.1270 40 1 6.6716 6.5353 2.5885 41 1 8.2999 5.8371 2.8122 42 1 7.5722 4.8373 5.3878 43 1 6.7293 9.2902 2.6344 44 1 8.0859 9.9666 3.5692 45 1 8.1548 10.3477 1.0205 46 1 9.6213 9.6520 1.7532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128240895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:32 Heat of formation + Delta-G solvation = 38.518637 kcal Electronic energy + Delta-G solvation = -26701.065039 eV Core-core repulsion = 22946.297080 eV Total energy + Delta-G solvation = -3754.767959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.44129 -40.52545 -37.97679 -36.15501 -35.53395 -34.64967 -33.05597 -31.88583 -31.44066 -29.77228 -28.13676 -27.72873 -26.10211 -25.10588 -23.33439 -22.63910 -21.64329 -21.51880 -19.98955 -18.54951 -18.39960 -17.66264 -17.43105 -16.84502 -16.75994 -16.58822 -16.25016 -16.14460 -15.51530 -15.31572 -15.05722 -14.92360 -14.73615 -14.54435 -14.46303 -14.31632 -13.96303 -13.70079 -13.35790 -13.26065 -13.05543 -12.94905 -12.72481 -12.63346 -12.37853 -12.34742 -12.06545 -12.04035 -11.92670 -11.70321 -11.62839 -11.13775 -10.85196 -10.78058 -10.08627 -10.07147 -9.40703 -8.95658 -8.66683 -7.99762 -5.42821 0.47727 0.93178 1.44307 1.48352 1.54875 1.57836 1.59870 1.63106 1.66824 2.43968 2.50587 3.19755 3.42557 3.60020 3.75764 3.82705 3.92798 3.98046 4.08085 4.14055 4.19514 4.23579 4.28381 4.37048 4.41272 4.46408 4.58069 4.69730 4.75356 4.78370 4.86966 4.87208 4.92905 5.01644 5.16767 5.21467 5.23099 5.36139 5.39788 5.41696 5.57943 5.74888 6.08269 6.19570 6.52361 6.79695 6.98454 7.20171 7.64944 8.15724 9.09330 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.002898 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.349980 B = 9660.373535 C =11410.496045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.087 4.087 4 S -0.261 6.261 5 C -0.110 4.110 6 C 0.524 3.476 7 O -0.570 6.570 8 N -0.704 5.704 9 C 0.218 3.782 10 C -0.274 4.274 11 C 0.068 3.932 12 N -0.326 5.326 13 N -0.367 5.367 14 C 0.096 3.904 15 C 0.249 3.751 16 N -0.616 5.616 17 C -0.267 4.267 18 H 0.079 0.921 19 C -0.042 4.042 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.272 1.272 25 C 0.128 3.872 26 C 0.117 3.883 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.411 0.589 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.215 0.785 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.252 0.748 43 H 0.041 0.959 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 -1.145 -12.402 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.236 4.236 4 S -0.034 6.034 5 C -0.261 4.261 6 C 0.310 3.690 7 O -0.449 6.449 8 N -0.356 5.356 9 C 0.094 3.906 10 C -0.287 4.287 11 C -0.119 4.119 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.035 4.035 15 C 0.122 3.878 16 N -0.339 5.339 17 C -0.396 4.396 18 H 0.097 0.903 19 C -0.239 4.239 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.197 1.197 25 C 0.002 3.998 26 C -0.006 4.006 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.247 0.753 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.232 0.768 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.414 -1.444 -12.566 16.384 hybrid contribution -0.467 0.232 1.327 1.426 sum -10.881 -1.212 -11.239 15.690 Atomic orbital electron populations 1.21736 0.93073 1.02740 1.02595 1.21248 0.97168 0.93426 1.02821 1.23601 0.91535 1.02366 1.06051 1.87796 1.08809 1.08537 1.98276 1.23421 0.95358 0.98032 1.09269 1.20158 0.90067 0.83074 0.75712 1.90723 1.63381 1.39882 1.50957 1.45960 1.07981 1.07566 1.74123 1.19156 0.79956 0.90079 1.01445 1.19504 1.19877 0.96647 0.92633 1.24255 0.97713 0.89587 1.00312 1.77171 1.25699 1.21574 0.90175 1.48691 1.51986 1.08489 1.05644 1.22219 0.96637 0.86482 0.98195 1.19352 0.97383 0.91014 0.80010 1.44431 1.68693 1.00833 1.19968 1.19461 1.22201 1.01407 0.96549 0.90349 1.25703 0.98787 0.98845 1.00536 1.70072 1.31709 1.11603 1.44072 0.85330 0.79297 0.76647 0.79503 1.20709 1.22320 1.19742 1.21438 0.96869 0.88222 0.93317 1.22544 1.02547 0.85361 0.90132 0.92171 0.91700 0.91530 0.91378 0.91980 0.89298 0.88437 0.85702 0.84094 0.75335 0.89730 0.93892 0.76825 0.94550 0.91104 0.93879 0.94050 0.88282 0.86929 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.11 -1.60 5.94 30.59 0.18 -1.42 16 3 C -0.09 -1.40 5.94 71.98 0.43 -0.97 16 4 S -0.26 -6.62 20.87 -56.49 -1.18 -7.80 16 5 C -0.11 -2.39 6.42 71.24 0.46 -1.93 16 6 C 0.52 15.75 7.85 87.66 0.69 16.44 16 7 O -0.57 -22.40 15.86 -3.03 -0.05 -22.45 16 8 N -0.70 -19.46 5.55 -466.78 -2.59 -22.05 16 9 C 0.22 6.88 5.95 85.64 0.51 7.39 16 10 C -0.27 -8.97 5.46 -20.24 -0.11 -9.08 16 11 C 0.07 1.96 11.97 85.26 1.02 2.98 16 12 N -0.33 -10.93 12.61 -56.79 -0.72 -11.65 16 13 N -0.37 -13.16 4.03 -334.04 -1.35 -14.50 16 14 C 0.10 3.69 6.71 41.30 0.28 3.97 16 15 C 0.25 11.34 5.11 85.55 0.44 11.77 16 16 N -0.62 -28.37 3.01 -701.16 -2.11 -30.48 16 17 C -0.27 -13.58 9.67 84.03 0.81 -12.77 16 18 H 0.08 3.82 7.88 -2.91 -0.02 3.79 16 19 C -0.04 -2.25 5.00 84.86 0.42 -1.82 16 20 N -0.93 -51.96 11.07 21.65 0.24 -51.72 16 21 Si 0.96 43.37 29.58 68.60 2.03 45.40 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C 0.13 4.54 6.49 86.35 0.56 5.10 16 26 C 0.12 3.65 7.44 86.45 0.64 4.29 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.41 9.57 8.46 -92.71 -0.78 8.78 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.22 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 3.75 6.46 -2.39 -0.02 3.74 16 42 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 3.17 7.94 -2.39 -0.02 3.15 16 45 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -69.38 393.03 1.51 -67.87 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.19 Total: 24.22 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 7.04 Total: 23.16 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -6.52 Total: -130.40 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -1.18 Total: -7.80 kcal Total: -69.38 1.51 -67.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128240895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.384 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds