Wall clock time and date at job start Tue Mar 31 2020 21:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58343 * 2 1 4 4 C 1.53188 * 109.58616 * 239.71460 * 2 1 3 5 5 C 1.53042 * 109.31517 * 185.57406 * 4 2 1 6 6 C 1.53043 * 109.53572 * 61.36767 * 5 4 2 7 7 H 1.08998 * 109.49671 * 58.61491 * 6 5 4 8 8 N 1.46493 * 109.49910 * 178.68644 * 6 5 4 9 9 C 1.34777 * 120.00245 * 205.00136 * 8 6 5 10 10 O 1.21284 * 119.99867 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00223 * 179.72447 * 9 8 6 12 12 C 1.53003 * 109.47309 * 180.27506 * 11 9 8 13 13 O 1.42894 * 109.47335 * 179.97438 * 12 11 9 14 14 C 1.42900 * 114.00251 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47261 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.47227 * 59.99740 * 15 14 13 17 17 F 1.39900 * 109.46900 * 179.97438 * 15 14 13 18 18 F 1.39900 * 109.46862 * 299.99643 * 15 14 13 19 19 C 1.53197 * 109.31005 * 298.63543 * 6 5 4 20 20 N 1.46924 * 108.77752 * 54.63777 * 19 6 5 21 21 C 1.36935 * 120.63498 * 126.36897 * 20 19 6 22 22 H 1.08001 * 119.99986 * 209.03259 * 21 20 19 23 23 C 1.38812 * 119.99800 * 29.03043 * 21 20 19 24 24 N 1.31614 * 120.00174 * 15.01783 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 195.01514 * 23 21 20 26 26 H 1.48500 * 109.46991 * 90.00122 * 25 23 21 27 27 H 1.48499 * 109.47219 * 210.00068 * 25 23 21 28 28 H 1.48501 * 109.47372 * 330.00786 * 25 23 21 29 29 H 1.09002 * 109.47290 * 180.28547 * 1 2 3 30 30 H 1.08999 * 109.47182 * 300.27931 * 1 2 3 31 31 H 1.08998 * 109.47294 * 60.28355 * 1 2 3 32 32 H 1.09006 * 109.49852 * 65.62712 * 4 2 1 33 33 H 1.08996 * 109.50254 * 305.53156 * 4 2 1 34 34 H 1.09000 * 109.45858 * 301.34741 * 5 4 2 35 35 H 1.08994 * 109.46314 * 181.38425 * 5 4 2 36 36 H 0.97000 * 120.00370 * 24.99269 * 8 6 5 37 37 H 1.09003 * 109.47142 * 300.26965 * 11 9 8 38 38 H 1.09002 * 109.47726 * 60.27120 * 11 9 8 39 39 H 1.09003 * 109.46577 * 299.99805 * 12 11 9 40 40 H 1.08999 * 109.47451 * 59.99518 * 12 11 9 41 41 H 1.08999 * 109.46787 * 300.00001 * 14 13 12 42 42 H 1.09003 * 109.47449 * 59.99870 * 14 13 12 43 43 H 1.09007 * 109.58223 * 174.42118 * 19 6 5 44 44 H 1.09001 * 109.58779 * 294.84970 * 19 6 5 45 45 H 0.97002 * 120.00179 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1713 6 6 3.9569 -1.6658 0.0613 7 1 3.4988 -2.6530 0.0016 8 7 5.4142 -1.8054 0.1152 9 6 5.9677 -2.8490 0.7640 10 8 5.2593 -3.6723 1.3037 11 6 7.4666 -2.9960 0.8141 12 6 7.8294 -4.2580 1.5994 13 8 9.2507 -4.3977 1.6464 14 6 9.6981 -5.5512 2.3615 15 6 11.2274 -5.5985 2.3478 16 9 11.7350 -4.4461 2.9572 17 9 11.6653 -6.7275 3.0484 18 9 11.6800 -5.6649 1.0257 19 6 3.4651 -0.9485 1.3225 20 7 2.0226 -0.7010 1.1936 21 6 1.1537 -1.1161 2.1672 22 1 0.1360 -1.3705 1.9100 23 6 1.5809 -1.2100 3.4846 24 7 2.7038 -0.6322 3.8551 25 14 0.5618 -2.1564 4.7317 26 1 0.9962 -3.5763 4.7505 27 1 0.7523 -1.5626 6.0794 28 1 -0.8731 -2.0828 4.3566 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1642 -2.1371 33 1 1.6029 -1.7237 -1.2935 34 1 4.0060 0.1488 -1.0992 35 1 3.9377 -1.3422 -2.0685 36 1 5.9809 -1.1468 -0.3162 37 1 7.8582 -3.0742 -0.2001 38 1 7.9010 -2.1251 1.3051 39 1 7.4379 -4.1798 2.6137 40 1 7.3951 -5.1289 1.1085 41 1 9.3458 -5.4993 3.3917 42 1 9.3022 -6.4491 1.8870 43 1 3.6519 -1.5745 2.1952 44 1 3.9903 0.0004 1.4316 45 1 3.0026 -0.6981 4.7756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132148430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:59 Heat of formation + Delta-G solvation = -224.202598 kcal Electronic energy + Delta-G solvation = -29855.718104 eV Core-core repulsion = 25072.655335 eV Total energy + Delta-G solvation = -4783.062769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.38437 -47.94775 -47.83497 -39.69709 -38.42759 -37.57584 -34.44973 -32.84228 -32.35705 -30.68723 -29.87959 -29.33668 -26.11468 -25.08327 -23.72598 -23.51592 -22.25645 -20.68699 -20.00090 -19.23080 -18.93375 -18.91745 -18.03714 -17.19762 -16.58933 -16.41659 -15.91287 -15.65083 -15.13095 -14.86441 -14.75115 -14.55227 -14.30317 -14.10821 -14.01960 -14.01320 -13.91595 -13.80389 -13.42933 -13.38010 -13.13883 -12.70511 -12.41287 -12.05724 -11.83931 -11.70450 -11.57260 -11.42449 -11.13601 -10.89068 -10.73425 -10.54114 -10.40965 -10.27011 -10.15036 -9.97058 -9.79800 -9.47794 -9.40642 -8.57266 -8.42694 -6.62704 -5.74772 -3.19437 2.11805 2.88482 2.94963 3.41426 3.45051 3.48202 3.48834 3.65291 3.67483 4.20604 4.52772 4.63555 4.67951 4.74172 4.90034 5.10131 5.32434 5.35156 5.35879 5.49584 5.55897 5.56977 5.67365 5.67971 5.95301 6.09003 6.25450 6.28985 6.37674 6.43848 6.48475 6.51769 6.61264 6.72804 6.91181 7.03128 7.11307 7.30723 7.73111 7.83310 7.88359 8.48888 8.57040 9.23926 9.88065 10.43095 11.33198 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.002404 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.559466 B =11644.697215 C =13071.322640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.718 5.718 9 C 0.514 3.486 10 O -0.536 6.536 11 C -0.139 4.139 12 C 0.079 3.921 13 O -0.378 6.378 14 C 0.020 3.980 15 C 0.462 3.538 16 F -0.176 7.176 17 F -0.178 7.178 18 F -0.177 7.177 19 C 0.168 3.832 20 N -0.584 5.584 21 C -0.252 4.252 22 H 0.071 0.929 23 C 0.005 3.995 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.394 0.606 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.016 0.984 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.138 -6.158 -8.216 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.100 0.900 8 N -0.368 5.368 9 C 0.299 3.701 10 O -0.413 6.413 11 C -0.179 4.179 12 C 0.003 3.997 13 O -0.297 6.297 14 C -0.059 4.059 15 C 0.407 3.593 16 F -0.157 7.157 17 F -0.159 7.159 18 F -0.158 7.158 19 C 0.041 3.959 20 N -0.307 5.307 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.034 0.966 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.803 -6.601 -7.731 17.143 hybrid contribution 0.037 -0.275 0.618 0.678 sum 13.840 -6.876 -7.113 17.013 Atomic orbital electron populations 1.21803 0.95998 1.01434 1.00175 1.20488 0.93080 0.93553 0.87067 0.95749 1.22048 0.94314 1.01317 0.98925 1.21679 0.97410 0.99655 0.96698 1.22011 0.77712 1.00875 0.98329 0.90037 1.46043 1.08709 1.26522 1.55573 1.20146 0.89459 0.81734 0.78735 1.90762 1.63616 1.42184 1.44692 1.21461 0.93862 0.99521 1.03071 1.22305 0.77961 0.98107 1.01317 1.87806 1.24073 1.42836 1.74985 1.23481 0.88538 0.92810 1.01036 1.20217 0.91478 0.73685 0.73894 1.93223 1.89293 1.50019 1.83159 1.93209 1.91102 1.52314 1.79323 1.93213 1.91038 1.95942 1.35635 1.21095 0.83534 0.96921 0.94369 1.44031 1.02662 1.64636 1.19388 1.19161 0.94727 1.38097 0.86172 0.91166 1.25072 0.97763 0.99489 0.97011 1.69995 1.23348 1.44372 1.16823 0.86315 0.79759 0.80018 0.80822 1.21371 1.21822 1.20442 0.92779 0.92023 0.94335 0.92676 0.92089 0.92265 0.93102 0.77310 0.88198 0.87861 0.91213 0.91562 0.88332 0.88463 0.88655 0.96555 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.30 -2.23 16 2 C 0.16 3.31 3.50 -67.60 -0.24 3.08 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 5 C -0.12 -1.80 5.35 -26.69 -0.14 -1.95 16 6 C 0.12 2.16 2.61 -67.81 -0.18 1.99 16 7 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 8 N -0.72 -10.84 5.08 -53.69 -0.27 -11.11 16 9 C 0.51 8.13 7.80 -10.99 -0.09 8.04 16 10 O -0.54 -11.00 15.64 5.55 0.09 -10.92 16 11 C -0.14 -1.55 6.07 -27.88 -0.17 -1.72 16 12 C 0.08 0.89 5.23 37.16 0.19 1.09 16 13 O -0.38 -4.02 10.23 -35.23 -0.36 -4.38 16 14 C 0.02 0.16 5.90 37.16 0.22 0.38 16 15 C 0.46 4.22 3.32 37.16 0.12 4.35 16 16 F -0.18 -1.87 17.26 2.25 0.04 -1.83 16 17 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 18 F -0.18 -1.82 17.26 2.25 0.04 -1.78 16 19 C 0.17 3.96 4.86 -3.71 -0.02 3.94 16 20 N -0.58 -14.30 2.99 -164.77 -0.49 -14.79 16 21 C -0.25 -6.82 8.61 -15.06 -0.13 -6.94 16 22 H 0.07 1.85 6.20 -52.49 -0.33 1.53 16 23 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 24 N -0.90 -26.34 11.14 55.49 0.62 -25.72 16 25 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 30 H 0.06 1.23 7.66 -51.93 -0.40 0.84 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.39 4.53 8.60 -40.82 -0.35 4.18 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 2.67 6.06 -51.92 -0.31 2.35 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -32.52 376.91 -6.80 -39.32 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.79 Total: 2.11 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.36 Total: 7.84 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.15 Total: -51.62 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.27 Total: -15.29 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.12 Total: -5.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.52 -6.80 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.882 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds