Wall clock time and date at job start Tue Mar 31 2020 21:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58343 * 2 1 4 4 C 1.53188 * 109.58616 * 239.71460 * 2 1 3 5 5 C 1.53042 * 109.31517 * 185.57406 * 4 2 1 6 6 C 1.53043 * 109.53572 * 61.36767 * 5 4 2 7 7 H 1.08998 * 109.49671 * 58.61491 * 6 5 4 8 8 N 1.46493 * 109.49910 * 178.68644 * 6 5 4 9 9 C 1.34777 * 120.00245 * 205.00136 * 8 6 5 10 10 O 1.21284 * 119.99867 * 359.97438 * 9 8 6 11 11 C 1.50695 * 120.00223 * 179.72447 * 9 8 6 12 12 C 1.53003 * 109.47309 * 180.27506 * 11 9 8 13 13 O 1.42894 * 109.47335 * 179.97438 * 12 11 9 14 14 C 1.42900 * 114.00251 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47261 * 180.02562 * 14 13 12 16 16 F 1.39900 * 109.47227 * 59.99740 * 15 14 13 17 17 F 1.39900 * 109.46900 * 179.97438 * 15 14 13 18 18 F 1.39900 * 109.46862 * 299.99643 * 15 14 13 19 19 C 1.53197 * 109.31005 * 298.63543 * 6 5 4 20 20 N 1.46924 * 108.77752 * 54.63777 * 19 6 5 21 21 C 1.36935 * 120.63498 * 126.36897 * 20 19 6 22 22 H 1.08001 * 119.99986 * 209.03259 * 21 20 19 23 23 C 1.38812 * 119.99800 * 29.03043 * 21 20 19 24 24 N 1.31614 * 120.00174 * 15.01783 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 195.01514 * 23 21 20 26 26 H 1.48500 * 109.46991 * 90.00122 * 25 23 21 27 27 H 1.48499 * 109.47219 * 210.00068 * 25 23 21 28 28 H 1.48501 * 109.47372 * 330.00786 * 25 23 21 29 29 H 1.09002 * 109.47290 * 180.28547 * 1 2 3 30 30 H 1.08999 * 109.47182 * 300.27931 * 1 2 3 31 31 H 1.08998 * 109.47294 * 60.28355 * 1 2 3 32 32 H 1.09006 * 109.49852 * 65.62712 * 4 2 1 33 33 H 1.08996 * 109.50254 * 305.53156 * 4 2 1 34 34 H 1.09000 * 109.45858 * 301.34741 * 5 4 2 35 35 H 1.08994 * 109.46314 * 181.38425 * 5 4 2 36 36 H 0.97000 * 120.00370 * 24.99269 * 8 6 5 37 37 H 1.09003 * 109.47142 * 300.26965 * 11 9 8 38 38 H 1.09002 * 109.47726 * 60.27120 * 11 9 8 39 39 H 1.09003 * 109.46577 * 299.99805 * 12 11 9 40 40 H 1.08999 * 109.47451 * 59.99518 * 12 11 9 41 41 H 1.08999 * 109.46787 * 300.00001 * 14 13 12 42 42 H 1.09003 * 109.47449 * 59.99870 * 14 13 12 43 43 H 1.09007 * 109.58223 * 174.42118 * 19 6 5 44 44 H 1.09001 * 109.58779 * 294.84970 * 19 6 5 45 45 H 0.97002 * 120.00179 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1713 6 6 3.9569 -1.6658 0.0613 7 1 3.4988 -2.6530 0.0016 8 7 5.4142 -1.8054 0.1152 9 6 5.9677 -2.8490 0.7640 10 8 5.2593 -3.6723 1.3037 11 6 7.4666 -2.9960 0.8141 12 6 7.8294 -4.2580 1.5994 13 8 9.2507 -4.3977 1.6464 14 6 9.6981 -5.5512 2.3615 15 6 11.2274 -5.5985 2.3478 16 9 11.7350 -4.4461 2.9572 17 9 11.6653 -6.7275 3.0484 18 9 11.6800 -5.6649 1.0257 19 6 3.4651 -0.9485 1.3225 20 7 2.0226 -0.7010 1.1936 21 6 1.1537 -1.1161 2.1672 22 1 0.1360 -1.3705 1.9100 23 6 1.5809 -1.2100 3.4846 24 7 2.7038 -0.6322 3.8551 25 14 0.5618 -2.1564 4.7317 26 1 0.9962 -3.5763 4.7505 27 1 0.7523 -1.5626 6.0794 28 1 -0.8731 -2.0828 4.3566 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1642 -2.1371 33 1 1.6029 -1.7237 -1.2935 34 1 4.0060 0.1488 -1.0992 35 1 3.9377 -1.3422 -2.0685 36 1 5.9809 -1.1468 -0.3162 37 1 7.8582 -3.0742 -0.2001 38 1 7.9010 -2.1251 1.3051 39 1 7.4379 -4.1798 2.6137 40 1 7.3951 -5.1289 1.1085 41 1 9.3458 -5.4993 3.3917 42 1 9.3022 -6.4491 1.8870 43 1 3.6519 -1.5745 2.1952 44 1 3.9903 0.0004 1.4316 45 1 3.0026 -0.6981 4.7756 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132148430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:58 Heat of formation + Delta-G solvation = -246.369306 kcal Electronic energy + Delta-G solvation = -29856.679325 eV Core-core repulsion = 25072.655335 eV Total energy + Delta-G solvation = -4784.023990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.13410 -48.68559 -48.61644 -41.01853 -39.48763 -38.93708 -35.98738 -34.64959 -33.39037 -32.03997 -31.67117 -30.20472 -27.74806 -26.81002 -24.80969 -24.28420 -23.89934 -22.16602 -21.38400 -20.78794 -19.69197 -19.66673 -18.84056 -18.35569 -18.16751 -17.43410 -17.34184 -16.85560 -16.62534 -16.06414 -15.70746 -15.51493 -15.44149 -15.38351 -15.06907 -15.03979 -14.95900 -14.79698 -14.78204 -14.72301 -14.40060 -14.12435 -13.99581 -13.48593 -13.07388 -12.79550 -12.73506 -12.70106 -12.57898 -12.48995 -12.40583 -12.26326 -12.09061 -11.96162 -11.64675 -11.40141 -11.13254 -10.95087 -10.82991 -10.53366 -10.03617 -8.61357 -7.84166 -5.30297 1.36410 1.41635 1.45748 1.51662 1.68702 2.01831 2.46761 2.54740 2.82783 2.97975 3.31661 3.42460 3.66076 3.75898 3.98304 3.99783 4.09319 4.09690 4.11562 4.17852 4.29421 4.41145 4.49278 4.64599 4.71907 4.72546 4.81009 4.83614 4.90903 5.01602 5.08942 5.20439 5.32659 5.36741 5.51845 5.55281 5.63048 5.71330 5.71839 5.83359 6.42315 6.65209 7.17221 7.36352 7.91434 8.40099 9.20647 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.002404 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.559466 B =11644.697215 C =13071.322640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.051 0.949 8 N -0.708 5.708 9 C 0.509 3.491 10 O -0.590 6.590 11 C -0.127 4.127 12 C 0.083 3.917 13 O -0.386 6.386 14 C 0.015 3.985 15 C 0.464 3.536 16 F -0.186 7.186 17 F -0.176 7.176 18 F -0.184 7.184 19 C 0.179 3.821 20 N -0.604 5.604 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.933 5.933 25 Si 0.956 3.044 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.263 1.263 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.415 0.585 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.044 0.956 44 H -0.003 1.003 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.525 -6.064 -10.742 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.146 4.146 6 C 0.024 3.976 7 H 0.069 0.931 8 N -0.359 5.359 9 C 0.296 3.704 10 O -0.470 6.470 11 C -0.166 4.166 12 C 0.007 3.993 13 O -0.306 6.306 14 C -0.063 4.063 15 C 0.410 3.590 16 F -0.168 7.168 17 F -0.157 7.157 18 F -0.165 7.165 19 C 0.051 3.949 20 N -0.328 5.328 21 C -0.380 4.380 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.580 5.580 25 Si 0.785 3.215 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.188 1.188 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.252 0.748 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.205 -6.478 -10.312 18.711 hybrid contribution -0.066 -0.289 1.373 1.404 sum 14.139 -6.766 -8.939 18.045 Atomic orbital electron populations 1.21738 0.94876 1.01112 1.01009 1.20805 0.94225 0.93384 0.86837 0.96090 1.21951 0.94800 1.00821 0.98214 1.21646 0.96908 1.00011 0.95988 1.21494 0.79556 0.99018 0.97496 0.93084 1.45874 1.07562 1.27051 1.55436 1.20993 0.91320 0.80800 0.77238 1.90742 1.65335 1.44147 1.46774 1.21402 0.89921 1.00089 1.05219 1.22171 0.78405 0.98292 1.00471 1.87760 1.23319 1.44043 1.75441 1.23696 0.87674 0.92911 1.01996 1.20332 0.91902 0.73343 0.73470 1.93202 1.89534 1.50696 1.83336 1.93212 1.91144 1.52131 1.79245 1.93199 1.91204 1.95953 1.36150 1.20799 0.83596 0.95321 0.95139 1.44337 1.02678 1.65521 1.20291 1.19488 0.95186 1.36503 0.86806 0.90837 1.25777 0.99081 1.01117 0.98909 1.70153 1.25037 1.46352 1.16456 0.85420 0.79284 0.78095 0.78671 1.22245 1.22131 1.18766 0.93573 0.94414 0.90302 0.88716 0.92966 0.90876 0.89545 0.74769 0.84910 0.86413 0.92852 0.91429 0.86946 0.86220 0.93716 0.98496 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.94 71.98 0.57 -4.03 16 2 C 0.15 5.94 3.50 44.97 0.16 6.10 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.55 5.37 30.67 0.16 -3.39 16 5 C -0.11 -3.00 5.35 30.62 0.16 -2.83 16 6 C 0.13 4.83 2.61 45.07 0.12 4.95 16 7 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 8 N -0.71 -20.56 5.08 -442.17 -2.25 -22.80 16 9 C 0.51 15.92 7.80 87.66 0.68 16.60 16 10 O -0.59 -25.03 15.64 -3.04 -0.05 -25.08 16 11 C -0.13 -2.60 6.07 29.85 0.18 -2.42 16 12 C 0.08 1.79 5.23 71.98 0.38 2.17 16 13 O -0.39 -7.60 10.23 -148.98 -1.52 -9.12 16 14 C 0.02 0.23 5.90 71.98 0.42 0.65 16 15 C 0.46 7.94 3.32 71.98 0.24 8.18 16 16 F -0.19 -3.82 17.26 44.97 0.78 -3.05 16 17 F -0.18 -2.91 17.32 44.97 0.78 -2.13 16 18 F -0.18 -3.54 17.26 44.97 0.78 -2.77 16 19 C 0.18 8.70 4.86 86.36 0.42 9.12 16 20 N -0.60 -30.09 2.99 -675.22 -2.02 -32.11 16 21 C -0.25 -13.82 8.61 84.03 0.72 -13.09 16 22 H 0.07 3.94 6.20 -2.91 -0.02 3.92 16 23 C -0.05 -3.11 4.96 84.86 0.42 -2.69 16 24 N -0.93 -57.13 11.14 21.65 0.24 -56.89 16 25 Si 0.96 46.98 29.58 68.60 2.03 49.01 16 26 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 28 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 29 H 0.05 1.68 7.40 -2.39 -0.02 1.66 16 30 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.42 8.47 8.60 -92.71 -0.80 7.67 16 37 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 2.63 6.06 -2.38 -0.01 2.62 16 44 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -75.41 376.91 3.62 -71.79 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.21 Total: 13.86 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 4.64 Total: 19.30 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.02 Total: -111.81 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.57 Total: -34.20 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 2.33 Total: -7.95 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -75.41 3.62 -71.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.584 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds