Wall clock time and date at job start Tue Mar 31 2020 21:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58611 * 2 1 4 4 C 1.53188 * 109.58853 * 239.71689 * 2 1 3 5 5 C 1.53039 * 109.31462 * 185.43269 * 4 2 1 6 6 C 1.53046 * 109.53630 * 61.36566 * 5 4 2 7 7 H 1.08994 * 109.49551 * 178.65059 * 6 5 4 8 8 N 1.46496 * 109.49827 * 58.58504 * 6 5 4 9 9 C 1.34777 * 120.00250 * 155.06788 * 8 6 5 10 10 O 1.21284 * 119.99520 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00398 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47224 * 179.97438 * 11 9 8 13 13 O 1.42898 * 109.47323 * 179.97438 * 12 11 9 14 14 C 1.42894 * 114.00094 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46978 * 180.02562 * 14 13 12 16 16 F 1.39896 * 109.46886 * 60.00470 * 15 14 13 17 17 F 1.39892 * 109.47414 * 300.00614 * 15 14 13 18 18 F 1.39906 * 109.46806 * 180.02562 * 15 14 13 19 19 C 1.53191 * 109.33827 * 298.61959 * 6 5 4 20 20 N 1.46923 * 109.70341 * 120.35317 * 2 1 3 21 21 C 1.36941 * 120.63177 * 353.48965 * 20 2 1 22 22 H 1.07991 * 119.99981 * 29.50459 * 21 20 2 23 23 C 1.38811 * 119.99880 * 209.50607 * 21 20 2 24 24 N 1.31625 * 119.99994 * 16.13357 * 23 21 20 25 25 Si 1.86796 * 119.99970 * 196.13608 * 23 21 20 26 26 H 1.48499 * 109.47385 * 91.77038 * 25 23 21 27 27 H 1.48497 * 109.47256 * 211.77270 * 25 23 21 28 28 H 1.48500 * 109.46929 * 331.77262 * 25 23 21 29 29 H 1.08995 * 109.47394 * 180.28621 * 1 2 3 30 30 H 1.09008 * 109.47429 * 300.28564 * 1 2 3 31 31 H 1.09003 * 109.47473 * 60.28549 * 1 2 3 32 32 H 1.09000 * 109.49794 * 65.48066 * 4 2 1 33 33 H 1.08999 * 109.52005 * 305.40264 * 4 2 1 34 34 H 1.08996 * 109.46113 * 301.34687 * 5 4 2 35 35 H 1.09002 * 109.46018 * 181.37928 * 5 4 2 36 36 H 0.97008 * 120.00023 * 335.06647 * 8 6 5 37 37 H 1.09002 * 109.46791 * 59.99879 * 11 9 8 38 38 H 1.08995 * 109.47159 * 299.99952 * 11 9 8 39 39 H 1.09003 * 109.47185 * 59.99974 * 12 11 9 40 40 H 1.08995 * 109.47419 * 300.00289 * 12 11 9 41 41 H 1.09005 * 109.47049 * 60.00971 * 14 13 12 42 42 H 1.08994 * 109.47780 * 300.00627 * 14 13 12 43 43 H 1.08996 * 109.59124 * 174.44190 * 19 6 5 44 44 H 1.09000 * 109.58599 * 294.86444 * 19 6 5 45 45 H 0.97005 * 119.99497 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5678 -0.8433 -1.1729 6 6 3.9604 -1.6608 0.0600 7 1 5.0448 -1.7629 0.0985 8 7 3.3466 -2.9887 -0.0181 9 6 3.9052 -4.0286 0.6322 10 8 4.9164 -3.8651 1.2818 11 6 3.2742 -5.3947 0.5515 12 6 4.1002 -6.3873 1.3720 13 8 3.5015 -7.6826 1.2960 14 6 4.1992 -8.6895 2.0317 15 6 3.4734 -10.0278 1.8790 16 9 3.4310 -10.3836 0.5267 17 9 2.1692 -9.9099 2.3712 18 9 4.1562 -11.0135 2.5998 19 6 3.4691 -0.9438 1.3215 20 7 2.0253 -0.6990 1.1936 21 6 1.1584 -1.1151 2.1686 22 1 0.1433 -1.3794 1.9116 23 6 1.5844 -1.1971 3.4872 24 7 2.6906 -0.5893 3.8604 25 14 0.5877 -2.1701 4.7318 26 1 1.0881 -3.5673 4.7832 27 1 0.7243 -1.5458 6.0722 28 1 -0.8417 -2.1709 4.3294 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7638 -0.1654 -2.1371 33 1 1.6049 -1.7245 -1.2926 34 1 4.0045 0.1529 -1.1021 35 1 3.9381 -1.3391 -2.0702 36 1 2.5381 -3.1195 -0.5379 37 1 3.2440 -5.7200 -0.4884 38 1 2.2599 -5.3504 0.9480 39 1 4.1308 -6.0622 2.4120 40 1 5.1144 -6.4315 0.9752 41 1 4.2325 -8.4121 3.0853 42 1 5.2152 -8.7817 1.6479 43 1 3.6587 -1.5687 2.1942 44 1 3.9926 0.0062 1.4292 45 1 2.9880 -0.6464 4.7820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132148437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:02 Heat of formation + Delta-G solvation = -222.773289 kcal Electronic energy + Delta-G solvation = -30613.669066 eV Core-core repulsion = 25830.668276 eV Total energy + Delta-G solvation = -4783.000790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.32179 -47.88716 -47.76831 -39.65872 -38.39897 -37.51195 -34.14695 -32.75616 -32.25437 -30.65185 -29.92228 -29.24003 -26.26143 -25.03694 -23.80800 -23.47885 -22.19876 -20.65974 -20.19531 -18.88285 -18.85073 -18.75321 -17.99472 -17.19967 -16.44448 -16.31775 -15.94245 -15.40089 -15.08758 -14.74552 -14.69037 -14.47575 -14.24118 -14.07514 -13.98146 -13.95057 -13.94699 -13.83238 -13.38886 -13.28081 -13.00857 -12.75039 -12.51114 -11.99735 -11.87116 -11.50060 -11.46105 -11.25400 -11.18068 -10.97789 -10.89244 -10.73924 -10.39779 -10.33825 -10.05449 -9.97905 -9.59371 -9.48595 -9.36140 -8.46598 -8.40083 -6.61721 -5.76833 -3.20894 2.19392 2.97764 3.11617 3.36870 3.43815 3.45339 3.53610 3.74030 3.81279 4.30837 4.48711 4.70424 4.75409 4.87550 5.02357 5.24322 5.28698 5.33778 5.40410 5.48532 5.52320 5.57576 5.70997 5.84473 5.98794 6.09119 6.13327 6.30953 6.33162 6.42315 6.49722 6.58643 6.61960 6.66803 6.87325 7.03363 7.10536 7.35976 7.65709 7.82658 8.04954 8.47329 8.72660 9.21854 9.86402 10.42879 11.31167 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.003050 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.773412 B = 9179.490715 C =10318.982600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.075 0.925 8 N -0.697 5.697 9 C 0.519 3.481 10 O -0.552 6.552 11 C -0.140 4.140 12 C 0.081 3.919 13 O -0.377 6.377 14 C 0.020 3.980 15 C 0.461 3.539 16 F -0.177 7.177 17 F -0.175 7.175 18 F -0.179 7.179 19 C 0.163 3.837 20 N -0.583 5.583 21 C -0.251 4.251 22 H 0.068 0.932 23 C 0.007 3.993 24 N -0.898 5.898 25 Si 0.895 3.105 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.396 0.604 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.025 0.975 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -12.658 -9.097 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.093 0.907 8 N -0.347 5.347 9 C 0.304 3.696 10 O -0.430 6.430 11 C -0.180 4.180 12 C 0.005 3.995 13 O -0.296 6.296 14 C -0.059 4.059 15 C 0.407 3.593 16 F -0.158 7.158 17 F -0.156 7.156 18 F -0.160 7.160 19 C 0.036 3.964 20 N -0.306 5.306 21 C -0.381 4.381 22 H 0.086 0.914 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.725 3.275 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.231 0.769 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.043 0.957 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.303 -12.548 -8.569 15.550 hybrid contribution -0.787 -0.687 0.664 1.238 sum 2.516 -13.235 -7.905 15.620 Atomic orbital electron populations 1.21789 0.96095 1.01256 1.00148 1.20458 0.92889 0.93636 0.87188 0.95827 1.22065 0.95118 1.00703 0.99088 1.21688 0.97033 1.00152 0.96773 1.21780 0.96925 0.81792 0.98248 0.90702 1.45805 1.29327 1.08535 1.51064 1.20029 0.84461 0.85781 0.79288 1.90689 1.25639 1.85399 1.41299 1.21445 1.01839 0.92144 1.02558 1.22293 0.96156 0.79902 1.01134 1.87819 1.52087 1.18312 1.71431 1.23469 0.96367 0.85618 1.00407 1.20222 0.77994 0.87034 0.74040 1.93209 1.96339 1.93150 1.33141 1.93226 1.38751 1.96115 1.87542 1.93205 1.79824 1.64742 1.78243 1.21169 0.83779 0.97028 0.94396 1.44061 1.02631 1.64829 1.19077 1.19094 0.95013 1.37905 0.86093 0.91413 1.25054 0.97804 0.99426 0.96938 1.70006 1.24256 1.43218 1.16743 0.86406 0.79774 0.80100 0.81224 1.21537 1.21826 1.20457 0.92935 0.92086 0.94430 0.92880 0.92633 0.91150 0.93045 0.76883 0.88423 0.87720 0.91333 0.91686 0.88402 0.88544 0.88731 0.95736 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.95 37.16 0.30 -2.09 16 2 C 0.16 3.15 3.49 -67.60 -0.24 2.91 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.98 5.20 -26.61 -0.14 -2.12 16 5 C -0.12 -1.78 5.59 -26.69 -0.15 -1.93 16 6 C 0.12 2.14 2.81 -67.81 -0.19 1.95 16 7 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.70 -11.56 4.92 -53.69 -0.26 -11.82 16 9 C 0.52 8.89 7.80 -10.99 -0.09 8.80 16 10 O -0.55 -11.41 15.65 5.55 0.09 -11.32 16 11 C -0.14 -1.85 6.07 -27.88 -0.17 -2.02 16 12 C 0.08 1.03 5.23 37.16 0.19 1.23 16 13 O -0.38 -4.56 10.23 -35.23 -0.36 -4.92 16 14 C 0.02 0.18 5.90 37.16 0.22 0.40 16 15 C 0.46 4.68 3.32 37.16 0.12 4.80 16 16 F -0.18 -1.97 17.26 2.25 0.04 -1.93 16 17 F -0.17 -2.09 17.26 2.25 0.04 -2.05 16 18 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 19 C 0.16 3.75 4.89 -3.67 -0.02 3.74 16 20 N -0.58 -13.41 2.91 -164.73 -0.48 -13.89 16 21 C -0.25 -6.46 8.59 -15.06 -0.13 -6.59 16 22 H 0.07 1.71 6.23 -52.49 -0.33 1.38 16 23 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 24 N -0.90 -25.90 11.25 55.49 0.62 -25.28 16 25 Si 0.89 21.58 29.58 -169.99 -5.03 16.56 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.05 0.93 7.41 -51.93 -0.38 0.54 16 30 H 0.06 1.19 7.67 -51.92 -0.40 0.79 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.40 5.81 6.77 -40.82 -0.28 5.53 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 2.58 6.15 -51.93 -0.32 2.26 16 44 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -30.92 373.58 -6.68 -37.60 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.64 Total: 3.90 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.37 Total: 9.20 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.12 Total: -50.99 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.27 Total: -16.24 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.12 Total: -5.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.92 -6.68 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.172 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds