Wall clock time and date at job start Tue Mar 31 2020 21:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58611 * 2 1 4 4 C 1.53188 * 109.58853 * 239.71689 * 2 1 3 5 5 C 1.53039 * 109.31462 * 185.43269 * 4 2 1 6 6 C 1.53046 * 109.53630 * 61.36566 * 5 4 2 7 7 H 1.08994 * 109.49551 * 178.65059 * 6 5 4 8 8 N 1.46496 * 109.49827 * 58.58504 * 6 5 4 9 9 C 1.34777 * 120.00250 * 155.06788 * 8 6 5 10 10 O 1.21284 * 119.99520 * 359.97438 * 9 8 6 11 11 C 1.50698 * 120.00398 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.47224 * 179.97438 * 11 9 8 13 13 O 1.42898 * 109.47323 * 179.97438 * 12 11 9 14 14 C 1.42894 * 114.00094 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46978 * 180.02562 * 14 13 12 16 16 F 1.39896 * 109.46886 * 60.00470 * 15 14 13 17 17 F 1.39892 * 109.47414 * 300.00614 * 15 14 13 18 18 F 1.39906 * 109.46806 * 180.02562 * 15 14 13 19 19 C 1.53191 * 109.33827 * 298.61959 * 6 5 4 20 20 N 1.46923 * 109.70341 * 120.35317 * 2 1 3 21 21 C 1.36941 * 120.63177 * 353.48965 * 20 2 1 22 22 H 1.07991 * 119.99981 * 29.50459 * 21 20 2 23 23 C 1.38811 * 119.99880 * 209.50607 * 21 20 2 24 24 N 1.31625 * 119.99994 * 16.13357 * 23 21 20 25 25 Si 1.86796 * 119.99970 * 196.13608 * 23 21 20 26 26 H 1.48499 * 109.47385 * 91.77038 * 25 23 21 27 27 H 1.48497 * 109.47256 * 211.77270 * 25 23 21 28 28 H 1.48500 * 109.46929 * 331.77262 * 25 23 21 29 29 H 1.08995 * 109.47394 * 180.28621 * 1 2 3 30 30 H 1.09008 * 109.47429 * 300.28564 * 1 2 3 31 31 H 1.09003 * 109.47473 * 60.28549 * 1 2 3 32 32 H 1.09000 * 109.49794 * 65.48066 * 4 2 1 33 33 H 1.08999 * 109.52005 * 305.40264 * 4 2 1 34 34 H 1.08996 * 109.46113 * 301.34687 * 5 4 2 35 35 H 1.09002 * 109.46018 * 181.37928 * 5 4 2 36 36 H 0.97008 * 120.00023 * 335.06647 * 8 6 5 37 37 H 1.09002 * 109.46791 * 59.99879 * 11 9 8 38 38 H 1.08995 * 109.47159 * 299.99952 * 11 9 8 39 39 H 1.09003 * 109.47185 * 59.99974 * 12 11 9 40 40 H 1.08995 * 109.47419 * 300.00289 * 12 11 9 41 41 H 1.09005 * 109.47049 * 60.00971 * 14 13 12 42 42 H 1.08994 * 109.47780 * 300.00627 * 14 13 12 43 43 H 1.08996 * 109.59124 * 174.44190 * 19 6 5 44 44 H 1.09000 * 109.58599 * 294.86444 * 19 6 5 45 45 H 0.97005 * 119.99497 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5678 -0.8433 -1.1729 6 6 3.9604 -1.6608 0.0600 7 1 5.0448 -1.7629 0.0985 8 7 3.3466 -2.9887 -0.0181 9 6 3.9052 -4.0286 0.6322 10 8 4.9164 -3.8651 1.2818 11 6 3.2742 -5.3947 0.5515 12 6 4.1002 -6.3873 1.3720 13 8 3.5015 -7.6826 1.2960 14 6 4.1992 -8.6895 2.0317 15 6 3.4734 -10.0278 1.8790 16 9 3.4310 -10.3836 0.5267 17 9 2.1692 -9.9099 2.3712 18 9 4.1562 -11.0135 2.5998 19 6 3.4691 -0.9438 1.3215 20 7 2.0253 -0.6990 1.1936 21 6 1.1584 -1.1151 2.1686 22 1 0.1433 -1.3794 1.9116 23 6 1.5844 -1.1971 3.4872 24 7 2.6906 -0.5893 3.8604 25 14 0.5877 -2.1701 4.7318 26 1 1.0881 -3.5673 4.7832 27 1 0.7243 -1.5458 6.0722 28 1 -0.8417 -2.1709 4.3294 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3634 0.5183 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7638 -0.1654 -2.1371 33 1 1.6049 -1.7245 -1.2926 34 1 4.0045 0.1529 -1.1021 35 1 3.9381 -1.3391 -2.0702 36 1 2.5381 -3.1195 -0.5379 37 1 3.2440 -5.7200 -0.4884 38 1 2.2599 -5.3504 0.9480 39 1 4.1308 -6.0622 2.4120 40 1 5.1144 -6.4315 0.9752 41 1 4.2325 -8.4121 3.0853 42 1 5.2152 -8.7817 1.6479 43 1 3.6587 -1.5687 2.1942 44 1 3.9926 0.0062 1.4292 45 1 2.9880 -0.6464 4.7820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132148437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:01 Heat of formation + Delta-G solvation = -242.946895 kcal Electronic energy + Delta-G solvation = -30614.543859 eV Core-core repulsion = 25830.668276 eV Total energy + Delta-G solvation = -4783.875583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.14296 -48.69243 -48.62622 -41.04944 -39.50263 -38.86404 -35.74599 -34.48067 -33.37747 -31.96961 -31.68628 -30.17545 -27.84422 -26.76869 -24.93068 -24.29198 -23.84456 -22.13452 -21.54986 -20.34042 -19.70494 -19.67454 -18.87895 -18.38501 -18.04050 -17.40630 -17.27436 -16.79149 -16.49811 -16.04126 -15.70090 -15.52242 -15.46630 -15.43359 -15.07577 -14.97293 -14.87622 -14.80335 -14.78969 -14.63515 -14.41954 -14.00223 -13.98535 -13.58161 -12.97725 -12.84814 -12.76758 -12.61267 -12.56080 -12.48127 -12.41142 -12.37409 -12.08724 -12.04004 -11.55157 -11.19319 -11.03229 -10.95284 -10.83145 -10.50576 -9.89459 -8.55127 -7.80524 -5.25508 1.36783 1.42399 1.44960 1.51780 1.75408 2.07198 2.51650 2.58832 2.83331 2.97180 3.35048 3.43806 3.65526 3.74900 3.99194 4.03734 4.08789 4.09115 4.13789 4.19009 4.23224 4.48153 4.52491 4.67669 4.72605 4.76232 4.82480 4.85783 4.99368 5.07012 5.12800 5.15174 5.30000 5.35862 5.58923 5.64131 5.71922 5.73128 5.76639 5.78689 6.46350 6.72291 7.20980 7.41121 7.95199 8.46166 9.24698 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.003050 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.773412 B = 9179.490715 C =10318.982600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.010 0.990 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.065 0.935 8 N -0.690 5.690 9 C 0.512 3.488 10 O -0.593 6.593 11 C -0.131 4.131 12 C 0.086 3.914 13 O -0.388 6.388 14 C 0.015 3.985 15 C 0.464 3.536 16 F -0.183 7.183 17 F -0.188 7.188 18 F -0.175 7.175 19 C 0.172 3.828 20 N -0.594 5.594 21 C -0.236 4.236 22 H 0.077 0.923 23 C -0.052 4.052 24 N -0.937 5.937 25 Si 0.947 3.053 26 H -0.293 1.293 27 H -0.303 1.303 28 H -0.263 1.263 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.409 0.591 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.047 0.953 44 H -0.007 1.007 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -13.828 -11.957 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.028 0.972 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.083 0.917 8 N -0.341 5.341 9 C 0.299 3.701 10 O -0.475 6.475 11 C -0.171 4.171 12 C 0.010 3.990 13 O -0.308 6.308 14 C -0.063 4.063 15 C 0.409 3.591 16 F -0.164 7.164 17 F -0.169 7.169 18 F -0.156 7.156 19 C 0.045 3.955 20 N -0.318 5.318 21 C -0.367 4.367 22 H 0.094 0.906 23 C -0.247 4.247 24 N -0.584 5.584 25 Si 0.777 3.223 26 H -0.220 1.220 27 H -0.230 1.230 28 H -0.187 1.187 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.065 0.935 44 H 0.011 0.989 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.154 -13.731 -11.484 18.029 hybrid contribution -0.448 -0.292 1.522 1.614 sum 1.706 -14.023 -9.961 17.285 Atomic orbital electron populations 1.21719 0.94737 1.01421 1.00686 1.20772 0.94122 0.93135 0.87219 0.97196 1.21948 0.94751 1.01194 0.97863 1.21657 0.97225 0.99804 0.96124 1.21446 0.96349 0.82636 0.97339 0.91651 1.45729 1.29675 1.07750 1.50958 1.20757 0.83934 0.87235 0.78158 1.90673 1.27678 1.86228 1.42900 1.21400 1.01156 0.89751 1.04767 1.22147 0.96587 0.80269 0.99980 1.87769 1.52790 1.18266 1.71966 1.23703 0.97161 0.84282 1.01152 1.20332 0.77527 0.87515 0.73685 1.93197 1.96338 1.93262 1.33630 1.93201 1.39815 1.96200 1.87693 1.93212 1.79629 1.64676 1.78122 1.20856 0.84096 0.95180 0.95337 1.44280 1.02204 1.65465 1.19855 1.19431 0.95397 1.35434 0.86396 0.90574 1.25707 0.98962 1.01196 0.98855 1.70178 1.26307 1.45717 1.16206 0.85544 0.79431 0.78389 0.78911 1.22041 1.23033 1.18715 0.92807 0.94845 0.90702 0.89368 0.91497 0.91227 0.89479 0.75391 0.85050 0.87677 0.93282 0.90787 0.87147 0.85897 0.93486 0.98918 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 7.95 71.98 0.57 -3.61 16 2 C 0.15 5.55 3.49 44.97 0.16 5.71 16 3 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 4 C -0.12 -3.12 5.20 30.67 0.16 -2.96 16 5 C -0.11 -2.97 5.59 30.62 0.17 -2.80 16 6 C 0.13 4.59 2.81 45.07 0.13 4.71 16 7 H 0.07 2.47 7.58 -2.39 -0.02 2.45 16 8 N -0.69 -21.81 4.92 -442.17 -2.17 -23.98 16 9 C 0.51 17.15 7.80 87.66 0.68 17.84 16 10 O -0.59 -24.99 15.65 -3.04 -0.05 -25.04 16 11 C -0.13 -3.22 6.07 29.85 0.18 -3.04 16 12 C 0.09 2.09 5.23 71.98 0.38 2.47 16 13 O -0.39 -8.68 10.23 -148.98 -1.52 -10.21 16 14 C 0.01 0.25 5.90 71.98 0.42 0.67 16 15 C 0.46 8.73 3.32 71.98 0.24 8.97 16 16 F -0.18 -3.79 17.26 44.97 0.78 -3.01 16 17 F -0.19 -4.29 17.26 44.97 0.78 -3.51 16 18 F -0.17 -3.11 17.32 44.97 0.78 -2.33 16 19 C 0.17 8.21 4.89 86.35 0.42 8.63 16 20 N -0.59 -27.41 2.91 -675.07 -1.96 -29.38 16 21 C -0.24 -12.17 8.59 84.03 0.72 -11.45 16 22 H 0.08 3.76 6.23 -2.91 -0.02 3.74 16 23 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 24 N -0.94 -56.76 11.25 21.65 0.24 -56.52 16 25 Si 0.95 45.35 29.58 68.60 2.03 47.38 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.05 1.73 7.41 -2.39 -0.02 1.71 16 30 H 0.03 1.25 7.67 -2.38 -0.02 1.23 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.65 6.40 -2.39 -0.02 1.63 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.41 10.73 6.77 -92.70 -0.63 10.11 16 37 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 40 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 41 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 2.70 6.15 -2.39 -0.01 2.68 16 44 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 45 H 0.24 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -70.97 373.58 3.94 -67.03 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.39 Total: 16.91 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 4.65 Total: 22.65 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -3.89 Total: -109.87 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -1.57 Total: -35.25 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 2.33 Total: -8.86 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.97 3.94 -67.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.918 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds