Wall clock time and date at job start Tue Mar 31 2020 21:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.70295 * 2 1 4 4 C 1.53192 * 109.58440 * 120.35482 * 2 1 3 5 5 C 1.53041 * 109.31262 * 174.42263 * 4 2 1 6 6 C 1.53046 * 109.53519 * 298.63539 * 5 4 2 7 7 H 1.08996 * 109.49854 * 301.37656 * 6 5 4 8 8 N 1.46501 * 109.49382 * 181.31548 * 6 5 4 9 9 C 1.34785 * 119.99718 * 155.00034 * 8 6 5 10 10 O 1.21284 * 119.99972 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99881 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46888 * 180.02562 * 11 9 8 13 13 O 1.42900 * 109.46978 * 179.97438 * 12 11 9 14 14 C 1.42902 * 114.00111 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47270 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.46844 * 59.99945 * 15 14 13 17 17 F 1.39893 * 109.47259 * 179.97438 * 15 14 13 18 18 F 1.39895 * 109.47157 * 300.00362 * 15 14 13 19 19 C 1.53191 * 109.31324 * 61.36394 * 6 5 4 20 20 N 1.46917 * 108.77559 * 305.36726 * 19 6 5 21 21 C 1.36940 * 120.62925 * 233.58592 * 20 19 6 22 22 H 1.07996 * 120.00055 * 150.86872 * 21 20 19 23 23 C 1.38816 * 119.99971 * 330.86918 * 21 20 19 24 24 N 1.31621 * 119.99645 * 343.81780 * 23 21 20 25 25 Si 1.86801 * 119.99971 * 163.81269 * 23 21 20 26 26 H 1.48497 * 109.46930 * 94.31187 * 25 23 21 27 27 H 1.48500 * 109.46963 * 214.30930 * 25 23 21 28 28 H 1.48497 * 109.47151 * 334.31236 * 25 23 21 29 29 H 1.09005 * 109.46920 * 299.64397 * 1 2 3 30 30 H 1.09004 * 109.47050 * 59.64405 * 1 2 3 31 31 H 1.08994 * 109.47300 * 179.64727 * 1 2 3 32 32 H 1.09002 * 109.49716 * 54.47219 * 4 2 1 33 33 H 1.08996 * 109.50014 * 294.37266 * 4 2 1 34 34 H 1.08999 * 109.46219 * 178.61773 * 5 4 2 35 35 H 1.08995 * 109.44974 * 58.64672 * 5 4 2 36 36 H 0.96994 * 120.00362 * 334.99942 * 8 6 5 37 37 H 1.08991 * 109.47128 * 59.99959 * 11 9 8 38 38 H 1.09005 * 109.46605 * 299.99812 * 11 9 8 39 39 H 1.09001 * 109.47168 * 60.00030 * 12 11 9 40 40 H 1.08993 * 109.47185 * 299.99668 * 12 11 9 41 41 H 1.08999 * 109.46687 * 60.00177 * 14 13 12 42 42 H 1.09001 * 109.47107 * 300.00281 * 14 13 12 43 43 H 1.09004 * 109.58593 * 65.15429 * 19 6 5 44 44 H 1.08995 * 109.58635 * 185.57356 * 19 6 5 45 45 H 0.97004 * 119.99597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1702 6 6 3.9568 -1.6658 -0.0634 7 1 3.4987 -2.6531 -0.0049 8 7 5.4142 -1.8054 -0.1174 9 6 5.9676 -2.8483 -0.7676 10 8 5.2591 -3.6714 -1.3076 11 6 7.4667 -2.9922 -0.8227 12 6 7.8295 -4.2499 -1.6149 13 8 9.2510 -4.3861 -1.6676 14 6 9.6984 -5.5359 -2.3885 15 6 11.2278 -5.5797 -2.3806 16 9 11.6854 -5.6497 -1.0604 17 9 11.6657 -6.7057 -3.0858 18 9 11.7305 -4.4239 -2.9877 19 6 3.4650 -0.9470 -1.3237 20 7 2.0226 -0.6995 -1.1944 21 6 1.1537 -1.1127 -2.1689 22 1 0.1365 -1.3689 -1.9122 23 6 1.5805 -1.2021 -3.4868 24 7 2.6908 -0.6026 -3.8611 25 14 0.5789 -2.1733 -4.7290 26 1 -0.3432 -1.2567 -5.4465 27 1 1.4928 -2.8196 -5.7049 28 1 -0.2090 -3.2155 -4.0233 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0276 -0.0063 32 1 1.6029 -1.7253 1.2913 33 1 1.7660 -0.1669 2.1368 34 1 3.9377 -1.3449 2.0669 35 1 4.0059 0.1474 1.0993 36 1 5.9808 -1.1473 0.3147 37 1 7.8613 -3.0739 0.1900 38 1 7.8979 -2.1184 -1.3113 39 1 7.4349 -4.1677 -2.6277 40 1 7.3983 -5.1238 -1.1267 41 1 9.3422 -5.4811 -3.4172 42 1 9.3063 -6.4364 -1.9158 43 1 3.9903 0.0020 -1.4317 44 1 3.6518 -1.5718 -2.1971 45 1 2.9888 -0.6647 -4.7821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132148438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:05 Heat of formation + Delta-G solvation = -224.252352 kcal Electronic energy + Delta-G solvation = -29855.430024 eV Core-core repulsion = 25072.365097 eV Total energy + Delta-G solvation = -4783.064927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.38628 -47.94934 -47.83609 -39.70163 -38.42952 -37.57830 -34.45249 -32.83860 -32.36013 -30.68764 -29.88831 -29.33975 -26.11524 -25.08046 -23.72836 -23.51821 -22.26308 -20.68855 -20.00684 -19.23157 -18.93499 -18.91903 -18.03895 -17.20086 -16.59122 -16.41715 -15.91495 -15.65287 -15.13089 -14.86151 -14.75213 -14.55294 -14.30410 -14.11058 -14.02072 -14.01403 -13.91940 -13.80898 -13.43402 -13.38350 -13.14085 -12.71009 -12.41875 -12.05806 -11.83718 -11.70816 -11.57536 -11.42910 -11.13617 -10.91507 -10.70605 -10.54389 -10.41198 -10.27491 -10.15280 -9.98617 -9.80142 -9.47441 -9.41205 -8.57347 -8.43049 -6.62335 -5.75472 -3.19055 2.11682 2.88088 2.94489 3.40111 3.44891 3.48136 3.50401 3.65004 3.67353 4.20433 4.52915 4.63353 4.67798 4.73871 4.89749 5.09773 5.32197 5.34847 5.35614 5.49324 5.55688 5.56751 5.67165 5.67664 5.95129 6.08797 6.25541 6.28825 6.37603 6.43782 6.48111 6.51503 6.61204 6.72439 6.90625 7.03063 7.11386 7.29853 7.71162 7.83217 7.88073 8.48499 8.56414 9.23574 9.88075 10.43286 11.32820 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002407 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.956428 B =11628.587728 C =13054.094242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.082 0.918 8 N -0.718 5.718 9 C 0.514 3.486 10 O -0.536 6.536 11 C -0.139 4.139 12 C 0.079 3.921 13 O -0.378 6.378 14 C 0.020 3.980 15 C 0.462 3.538 16 F -0.177 7.177 17 F -0.178 7.178 18 F -0.175 7.175 19 C 0.169 3.831 20 N -0.584 5.584 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.278 1.278 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.394 0.606 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.017 0.983 44 H 0.093 0.907 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.193 -6.225 8.199 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.100 0.900 8 N -0.369 5.369 9 C 0.299 3.701 10 O -0.413 6.413 11 C -0.179 4.179 12 C 0.003 3.997 13 O -0.297 6.297 14 C -0.059 4.059 15 C 0.407 3.593 16 F -0.158 7.158 17 F -0.159 7.159 18 F -0.157 7.157 19 C 0.042 3.958 20 N -0.307 5.307 21 C -0.382 4.382 22 H 0.088 0.912 23 C -0.193 4.193 24 N -0.544 5.544 25 Si 0.730 3.270 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.227 0.773 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.035 0.965 44 H 0.111 0.889 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.867 -6.679 7.718 17.218 hybrid contribution 0.044 -0.268 -0.631 0.687 sum 13.911 -6.947 7.088 17.088 Atomic orbital electron populations 1.21800 0.95984 1.01441 1.00170 1.20491 0.93088 0.93551 0.87065 0.95753 1.22048 0.94305 1.01323 0.98931 1.21679 0.97421 0.99657 0.96681 1.22007 0.77706 1.00891 0.98305 0.90013 1.46049 1.08713 1.26576 1.55521 1.20153 0.89466 0.81720 0.78728 1.90760 1.63620 1.42163 1.44732 1.21461 0.93847 0.99579 1.03028 1.22305 0.77962 0.98149 1.01274 1.87808 1.24055 1.43121 1.74717 1.23480 0.88540 0.92886 1.00962 1.20213 0.91480 0.73687 0.73892 1.93214 1.90890 1.95926 1.35807 1.93207 1.91099 1.52526 1.79113 1.93222 1.89457 1.49740 1.83267 1.21064 0.83589 0.96864 0.94319 1.44030 1.02644 1.64777 1.19254 1.19137 0.94775 1.38177 0.86112 0.91224 1.25068 0.97829 0.99417 0.96997 1.70015 1.24109 1.43634 1.16669 0.86324 0.79329 0.80056 0.81324 1.21545 1.21605 1.20376 0.94337 0.92020 0.92766 0.92083 0.92670 0.93089 0.92258 0.77301 0.88191 0.87859 0.91223 0.91549 0.88333 0.88461 0.96529 0.88864 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.23 16 2 C 0.16 3.31 3.50 -67.60 -0.24 3.07 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 5 C -0.12 -1.80 5.35 -26.69 -0.14 -1.94 16 6 C 0.12 2.16 2.61 -67.81 -0.18 1.98 16 7 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 8 N -0.72 -10.81 5.08 -53.68 -0.27 -11.08 16 9 C 0.51 8.10 7.80 -10.98 -0.09 8.02 16 10 O -0.54 -10.96 15.64 5.55 0.09 -10.87 16 11 C -0.14 -1.55 6.07 -27.88 -0.17 -1.72 16 12 C 0.08 0.89 5.23 37.16 0.19 1.08 16 13 O -0.38 -4.01 10.23 -35.23 -0.36 -4.37 16 14 C 0.02 0.16 5.90 37.16 0.22 0.38 16 15 C 0.46 4.22 3.32 37.16 0.12 4.34 16 16 F -0.18 -1.82 17.26 2.25 0.04 -1.78 16 17 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 18 F -0.18 -1.87 17.26 2.25 0.04 -1.83 16 19 C 0.17 3.98 4.87 -3.72 -0.02 3.96 16 20 N -0.58 -14.29 2.99 -164.79 -0.49 -14.78 16 21 C -0.25 -6.83 8.60 -15.06 -0.13 -6.96 16 22 H 0.07 1.84 6.21 -52.49 -0.33 1.51 16 23 C 0.01 0.16 4.93 -17.43 -0.09 0.07 16 24 N -0.90 -26.32 11.22 55.49 0.62 -25.70 16 25 Si 0.90 22.14 29.58 -169.99 -5.03 17.11 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 31 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.39 4.52 8.60 -40.82 -0.35 4.16 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 2.60 6.11 -51.93 -0.32 2.28 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -32.53 377.01 -6.80 -39.33 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.80 Total: 2.01 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.36 Total: 7.83 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.14 Total: -51.56 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.27 Total: -15.25 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.12 Total: -5.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.53 -6.80 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.925 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds