Wall clock time and date at job start Tue Mar 31 2020 21:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.70295 * 2 1 4 4 C 1.53192 * 109.58440 * 120.35482 * 2 1 3 5 5 C 1.53041 * 109.31262 * 174.42263 * 4 2 1 6 6 C 1.53046 * 109.53519 * 298.63539 * 5 4 2 7 7 H 1.08996 * 109.49854 * 301.37656 * 6 5 4 8 8 N 1.46501 * 109.49382 * 181.31548 * 6 5 4 9 9 C 1.34785 * 119.99718 * 155.00034 * 8 6 5 10 10 O 1.21284 * 119.99972 * 359.97438 * 9 8 6 11 11 C 1.50702 * 119.99881 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46888 * 180.02562 * 11 9 8 13 13 O 1.42900 * 109.46978 * 179.97438 * 12 11 9 14 14 C 1.42902 * 114.00111 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47270 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.46844 * 59.99945 * 15 14 13 17 17 F 1.39893 * 109.47259 * 179.97438 * 15 14 13 18 18 F 1.39895 * 109.47157 * 300.00362 * 15 14 13 19 19 C 1.53191 * 109.31324 * 61.36394 * 6 5 4 20 20 N 1.46917 * 108.77559 * 305.36726 * 19 6 5 21 21 C 1.36940 * 120.62925 * 233.58592 * 20 19 6 22 22 H 1.07996 * 120.00055 * 150.86872 * 21 20 19 23 23 C 1.38816 * 119.99971 * 330.86918 * 21 20 19 24 24 N 1.31621 * 119.99645 * 343.81780 * 23 21 20 25 25 Si 1.86801 * 119.99971 * 163.81269 * 23 21 20 26 26 H 1.48497 * 109.46930 * 94.31187 * 25 23 21 27 27 H 1.48500 * 109.46963 * 214.30930 * 25 23 21 28 28 H 1.48497 * 109.47151 * 334.31236 * 25 23 21 29 29 H 1.09005 * 109.46920 * 299.64397 * 1 2 3 30 30 H 1.09004 * 109.47050 * 59.64405 * 1 2 3 31 31 H 1.08994 * 109.47300 * 179.64727 * 1 2 3 32 32 H 1.09002 * 109.49716 * 54.47219 * 4 2 1 33 33 H 1.08996 * 109.50014 * 294.37266 * 4 2 1 34 34 H 1.08999 * 109.46219 * 178.61773 * 5 4 2 35 35 H 1.08995 * 109.44974 * 58.64672 * 5 4 2 36 36 H 0.96994 * 120.00362 * 334.99942 * 8 6 5 37 37 H 1.08991 * 109.47128 * 59.99959 * 11 9 8 38 38 H 1.09005 * 109.46605 * 299.99812 * 11 9 8 39 39 H 1.09001 * 109.47168 * 60.00030 * 12 11 9 40 40 H 1.08993 * 109.47185 * 299.99668 * 12 11 9 41 41 H 1.08999 * 109.46687 * 60.00177 * 14 13 12 42 42 H 1.09001 * 109.47107 * 300.00281 * 14 13 12 43 43 H 1.09004 * 109.58593 * 65.15429 * 19 6 5 44 44 H 1.08995 * 109.58635 * 185.57356 * 19 6 5 45 45 H 0.97004 * 119.99597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8480 1.1702 6 6 3.9568 -1.6658 -0.0634 7 1 3.4987 -2.6531 -0.0049 8 7 5.4142 -1.8054 -0.1174 9 6 5.9676 -2.8483 -0.7676 10 8 5.2591 -3.6714 -1.3076 11 6 7.4667 -2.9922 -0.8227 12 6 7.8295 -4.2499 -1.6149 13 8 9.2510 -4.3861 -1.6676 14 6 9.6984 -5.5359 -2.3885 15 6 11.2278 -5.5797 -2.3806 16 9 11.6854 -5.6497 -1.0604 17 9 11.6657 -6.7057 -3.0858 18 9 11.7305 -4.4239 -2.9877 19 6 3.4650 -0.9470 -1.3237 20 7 2.0226 -0.6995 -1.1944 21 6 1.1537 -1.1127 -2.1689 22 1 0.1365 -1.3689 -1.9122 23 6 1.5805 -1.2021 -3.4868 24 7 2.6908 -0.6026 -3.8611 25 14 0.5789 -2.1733 -4.7290 26 1 -0.3432 -1.2567 -5.4465 27 1 1.4928 -2.8196 -5.7049 28 1 -0.2090 -3.2155 -4.0233 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0276 -0.0063 32 1 1.6029 -1.7253 1.2913 33 1 1.7660 -0.1669 2.1368 34 1 3.9377 -1.3449 2.0669 35 1 4.0059 0.1474 1.0993 36 1 5.9808 -1.1473 0.3147 37 1 7.8613 -3.0739 0.1900 38 1 7.8979 -2.1184 -1.3113 39 1 7.4349 -4.1677 -2.6277 40 1 7.3983 -5.1238 -1.1267 41 1 9.3422 -5.4811 -3.4172 42 1 9.3063 -6.4364 -1.9158 43 1 3.9903 0.0020 -1.4317 44 1 3.6518 -1.5718 -2.1971 45 1 2.9888 -0.6647 -4.7821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132148438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:04 Heat of formation + Delta-G solvation = -246.417971 kcal Electronic energy + Delta-G solvation = -29856.391198 eV Core-core repulsion = 25072.365097 eV Total energy + Delta-G solvation = -4784.026100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.13518 -48.68677 -48.61644 -41.01904 -39.48795 -38.93686 -35.98689 -34.64567 -33.39052 -32.03952 -31.67971 -30.20537 -27.74637 -26.80768 -24.81163 -24.28460 -23.90389 -22.16585 -21.38554 -20.78798 -19.69242 -19.66723 -18.84099 -18.35571 -18.16754 -17.43149 -17.33897 -16.85612 -16.62131 -16.06486 -15.71353 -15.51541 -15.44299 -15.38832 -15.06926 -15.03946 -14.95938 -14.79716 -14.78231 -14.72467 -14.40136 -14.13147 -13.99752 -13.47749 -13.07892 -12.79906 -12.75623 -12.68137 -12.55360 -12.48796 -12.40641 -12.27083 -12.11392 -11.97492 -11.65325 -11.40243 -11.12739 -10.95084 -10.83121 -10.52650 -10.03742 -8.61110 -7.84975 -5.30003 1.36374 1.41235 1.44766 1.52816 1.68460 2.01858 2.46744 2.54694 2.82789 2.97946 3.31252 3.42436 3.65983 3.75798 3.98121 3.99763 4.09308 4.09678 4.11582 4.17852 4.29323 4.41056 4.49219 4.64432 4.71867 4.72474 4.81024 4.83498 4.90933 5.01604 5.08954 5.20405 5.32645 5.36293 5.51263 5.55142 5.62667 5.71523 5.71843 5.82338 6.42045 6.65051 7.17017 7.36121 7.91378 8.40262 9.20235 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002407 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.956428 B =11628.587728 C =13054.094242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.051 0.949 8 N -0.708 5.708 9 C 0.509 3.491 10 O -0.589 6.589 11 C -0.127 4.127 12 C 0.083 3.917 13 O -0.386 6.386 14 C 0.015 3.985 15 C 0.464 3.536 16 F -0.184 7.184 17 F -0.176 7.176 18 F -0.186 7.186 19 C 0.180 3.820 20 N -0.604 5.604 21 C -0.250 4.250 22 H 0.073 0.927 23 C -0.053 4.053 24 N -0.933 5.933 25 Si 0.955 3.045 26 H -0.282 1.282 27 H -0.299 1.299 28 H -0.271 1.271 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.133 0.867 38 H 0.118 0.882 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.120 0.880 43 H -0.003 1.003 44 H 0.042 0.958 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.619 -6.195 10.720 19.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.146 4.146 6 C 0.025 3.975 7 H 0.070 0.930 8 N -0.359 5.359 9 C 0.297 3.703 10 O -0.470 6.470 11 C -0.166 4.166 12 C 0.007 3.993 13 O -0.306 6.306 14 C -0.063 4.063 15 C 0.410 3.590 16 F -0.165 7.165 17 F -0.157 7.157 18 F -0.168 7.168 19 C 0.052 3.948 20 N -0.328 5.328 21 C -0.381 4.381 22 H 0.091 0.909 23 C -0.248 4.248 24 N -0.579 5.579 25 Si 0.784 3.216 26 H -0.209 1.209 27 H -0.226 1.226 28 H -0.196 1.196 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.252 0.748 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.015 0.985 44 H 0.061 0.939 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.310 -6.622 10.293 18.831 hybrid contribution -0.075 -0.258 -1.385 1.411 sum 14.235 -6.881 8.908 18.148 Atomic orbital electron populations 1.21735 0.94865 1.01111 1.01006 1.20809 0.94232 0.93378 0.86847 0.96127 1.21951 0.94805 1.00816 0.98211 1.21646 0.96903 1.00022 0.95982 1.21490 0.79555 0.99039 0.97456 0.93026 1.45878 1.07560 1.27106 1.55394 1.20995 0.91319 0.80790 0.77241 1.90740 1.65326 1.44113 1.46790 1.21403 0.89926 1.00145 1.05163 1.22172 0.78398 0.98341 1.00430 1.87762 1.23310 1.44322 1.75178 1.23695 0.87668 0.93005 1.01909 1.20330 0.91910 0.73341 0.73468 1.93199 1.91058 1.95936 1.36322 1.93211 1.91142 1.52343 1.79035 1.93201 1.89697 1.50425 1.83443 1.20774 0.83629 0.95273 0.95083 1.44335 1.02669 1.65666 1.20140 1.19464 0.95228 1.36610 0.86759 0.90911 1.25770 0.99133 1.01052 0.98875 1.70168 1.25828 1.45592 1.16334 0.85433 0.77972 0.78967 0.79207 1.20860 1.22588 1.19576 0.90306 0.94416 0.93562 0.92959 0.88720 0.89522 0.90881 0.74767 0.84905 0.86431 0.92868 0.91394 0.86952 0.86207 0.98481 0.93924 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.94 71.98 0.57 -4.03 16 2 C 0.15 5.94 3.50 44.98 0.16 6.10 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -3.55 5.37 30.67 0.16 -3.39 16 5 C -0.11 -2.99 5.35 30.62 0.16 -2.83 16 6 C 0.13 4.82 2.61 45.07 0.12 4.94 16 7 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 8 N -0.71 -20.48 5.08 -442.14 -2.25 -22.73 16 9 C 0.51 15.85 7.80 87.66 0.68 16.53 16 10 O -0.59 -24.88 15.64 -3.04 -0.05 -24.93 16 11 C -0.13 -2.59 6.07 29.85 0.18 -2.41 16 12 C 0.08 1.78 5.23 71.98 0.38 2.16 16 13 O -0.39 -7.58 10.23 -148.98 -1.52 -9.11 16 14 C 0.02 0.22 5.90 71.98 0.42 0.65 16 15 C 0.46 7.93 3.32 71.98 0.24 8.17 16 16 F -0.18 -3.54 17.26 44.97 0.78 -2.77 16 17 F -0.18 -2.91 17.32 44.97 0.78 -2.13 16 18 F -0.19 -3.82 17.26 44.97 0.78 -3.04 16 19 C 0.18 8.73 4.87 86.36 0.42 9.15 16 20 N -0.60 -30.09 2.99 -675.27 -2.02 -32.10 16 21 C -0.25 -13.87 8.60 84.03 0.72 -13.15 16 22 H 0.07 3.90 6.21 -2.91 -0.02 3.88 16 23 C -0.05 -3.08 4.93 84.86 0.42 -2.66 16 24 N -0.93 -57.09 11.22 21.65 0.24 -56.85 16 25 Si 0.96 46.97 29.58 68.60 2.03 49.00 16 26 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 28 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 29 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.04 1.48 7.66 -2.39 -0.02 1.47 16 31 H 0.05 1.69 7.40 -2.39 -0.02 1.67 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.42 8.43 8.60 -92.71 -0.80 7.64 16 37 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.04 2.50 6.11 -2.39 -0.01 2.49 16 45 H 0.24 14.67 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -75.35 377.01 3.62 -71.73 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.21 Total: 13.70 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 4.64 Total: 19.24 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.02 Total: -111.68 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.57 Total: -34.04 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 2.33 Total: -7.94 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -75.35 3.62 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.688 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds