Wall clock time and date at job start Tue Mar 31 2020 21:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.58459 * 2 1 4 4 C 1.53197 * 109.58194 * 120.27731 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.27771 * 4 2 1 6 6 C 1.53047 * 109.66302 * 298.84731 * 5 4 2 7 7 H 1.08999 * 109.52450 * 181.26751 * 6 5 4 8 8 N 1.46498 * 109.49588 * 301.35268 * 6 5 4 9 9 C 1.34780 * 119.99485 * 204.83369 * 8 6 5 10 10 O 1.21283 * 120.00043 * 0.02562 * 9 8 6 11 11 C 1.50697 * 119.99897 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47320 * 180.02562 * 11 9 8 13 13 O 1.42901 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.42901 * 113.99762 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46923 * 179.97438 * 14 13 12 16 16 F 1.39899 * 109.46789 * 60.00886 * 15 14 13 17 17 F 1.39905 * 109.46869 * 180.02562 * 15 14 13 18 18 F 1.39891 * 109.47084 * 300.00419 * 15 14 13 19 19 C 1.53190 * 109.30574 * 61.30429 * 6 5 4 20 20 N 1.46922 * 109.58870 * 239.71078 * 2 1 3 21 21 C 1.36938 * 120.62907 * 6.58978 * 20 2 1 22 22 H 1.08007 * 119.99809 * 330.15256 * 21 20 2 23 23 C 1.38812 * 120.00272 * 150.16239 * 21 20 2 24 24 N 1.31625 * 119.99667 * 344.50109 * 23 21 20 25 25 Si 1.86795 * 120.00181 * 164.50719 * 23 21 20 26 26 H 1.48502 * 109.47234 * 59.99768 * 25 23 21 27 27 H 1.48499 * 109.47170 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47439 * 299.99570 * 25 23 21 29 29 H 1.08994 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46773 * 60.00190 * 1 2 3 31 31 H 1.09005 * 109.47081 * 300.00681 * 1 2 3 32 32 H 1.08997 * 109.49974 * 294.37540 * 4 2 1 33 33 H 1.08999 * 109.49399 * 54.47841 * 4 2 1 34 34 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 35 35 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 36 36 H 0.96998 * 120.00542 * 24.83861 * 8 6 5 37 37 H 1.09002 * 109.47226 * 300.00444 * 11 9 8 38 38 H 1.08999 * 109.47115 * 60.00170 * 11 9 8 39 39 H 1.08998 * 109.46750 * 299.99917 * 12 11 9 40 40 H 1.08999 * 109.47104 * 59.99899 * 12 11 9 41 41 H 1.09000 * 109.47494 * 300.00211 * 14 13 12 42 42 H 1.09010 * 109.46706 * 60.00226 * 14 13 12 43 43 H 1.09007 * 109.58396 * 185.58099 * 19 6 5 44 44 H 1.09000 * 109.59057 * 65.15157 * 19 6 5 45 45 H 0.96999 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5674 -0.8494 1.1692 6 6 3.9569 -1.6658 -0.0654 7 1 5.0411 -1.7701 -0.1060 8 7 3.3404 -2.9925 0.0113 9 6 3.8952 -4.0321 -0.6430 10 8 4.9049 -3.8692 -1.2948 11 6 3.2608 -5.3968 -0.5646 12 6 4.0826 -6.3894 -1.3894 13 8 3.4806 -7.6833 -1.3156 14 6 4.1736 -8.6898 -2.0563 15 6 3.4448 -10.0266 -1.9056 16 9 2.1396 -9.9037 -2.3942 17 9 4.1236 -11.0122 -2.6304 18 9 3.4050 -10.3863 -0.5544 19 6 3.4651 -0.9454 -1.3247 20 7 2.0226 -0.6981 -1.1952 21 6 1.1537 -1.1108 -2.1699 22 1 0.1398 -1.3787 -1.9113 23 6 1.5760 -1.1851 -3.4901 24 7 2.6866 -0.5836 -3.8606 25 14 0.5681 -2.1386 -4.7409 26 1 -0.7925 -1.5506 -4.8320 27 1 1.2287 -2.0646 -6.0688 28 1 0.4666 -3.5580 -4.3164 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5140 0.8900 32 1 1.7659 -0.1640 2.1371 33 1 1.6029 -1.7236 1.2936 34 1 3.9377 -1.3474 2.0654 35 1 4.0059 0.1460 1.0995 36 1 2.5331 -3.1228 0.5329 37 1 3.2317 -5.7248 0.4745 38 1 2.2458 -5.3488 -0.9590 39 1 4.1120 -6.0615 -2.4285 40 1 5.0974 -6.4372 -0.9947 41 1 4.2050 -8.4093 -3.1092 42 1 5.1905 -8.7858 -1.6754 43 1 3.6518 -1.5692 -2.1989 44 1 3.9904 0.0037 -1.4315 45 1 2.9818 -0.6358 -4.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132148439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:08 Heat of formation + Delta-G solvation = -222.769075 kcal Electronic energy + Delta-G solvation = -30611.845641 eV Core-core repulsion = 25828.845034 eV Total energy + Delta-G solvation = -4783.000607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.32127 -47.88648 -47.76820 -39.65536 -38.39652 -37.50932 -34.14582 -32.75381 -32.25216 -30.64961 -29.92270 -29.23882 -26.25420 -25.03596 -23.80544 -23.47807 -22.19515 -20.65800 -20.19087 -18.88193 -18.85046 -18.75137 -17.99371 -17.19763 -16.44329 -16.31523 -15.93899 -15.39931 -15.08542 -14.74289 -14.68985 -14.47371 -14.24070 -14.07231 -13.98399 -13.95073 -13.94657 -13.83465 -13.38593 -13.27822 -13.00751 -12.74748 -12.50717 -11.99467 -11.86926 -11.49787 -11.45978 -11.24862 -11.17518 -10.97375 -10.89446 -10.71391 -10.40926 -10.35289 -10.05399 -9.98003 -9.59361 -9.48811 -9.35912 -8.46140 -8.39809 -6.60704 -5.76504 -3.21055 2.19467 2.97830 3.11828 3.37193 3.43749 3.44539 3.53682 3.74058 3.81495 4.30922 4.48893 4.70406 4.75399 4.87713 5.02505 5.24526 5.29211 5.34057 5.40806 5.48586 5.52567 5.57657 5.71169 5.84779 5.99022 6.09416 6.13629 6.31179 6.33512 6.42567 6.49994 6.58818 6.62034 6.67161 6.87717 7.03819 7.10805 7.36384 7.66225 7.82252 8.05250 8.47986 8.72886 9.22326 9.86679 10.43334 11.31477 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003049 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.638630 B = 9181.462252 C =10324.645656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.075 0.925 8 N -0.697 5.697 9 C 0.519 3.481 10 O -0.552 6.552 11 C -0.140 4.140 12 C 0.081 3.919 13 O -0.377 6.377 14 C 0.020 3.980 15 C 0.461 3.539 16 F -0.175 7.175 17 F -0.179 7.179 18 F -0.177 7.177 19 C 0.163 3.837 20 N -0.582 5.582 21 C -0.252 4.252 22 H 0.067 0.933 23 C 0.007 3.993 24 N -0.899 5.899 25 Si 0.896 3.104 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.396 0.604 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.025 0.975 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -12.691 9.009 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.093 0.907 8 N -0.347 5.347 9 C 0.305 3.695 10 O -0.430 6.430 11 C -0.180 4.180 12 C 0.005 3.995 13 O -0.296 6.296 14 C -0.059 4.059 15 C 0.407 3.593 16 F -0.156 7.156 17 F -0.160 7.160 18 F -0.158 7.158 19 C 0.036 3.964 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.085 0.915 23 C -0.192 4.192 24 N -0.543 5.543 25 Si 0.726 3.274 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.043 0.957 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.312 -12.583 8.473 15.527 hybrid contribution -0.814 -0.670 -0.658 1.243 sum 2.498 -13.252 7.815 15.586 Atomic orbital electron populations 1.21795 0.96115 1.01219 1.00171 1.20462 0.92899 0.93640 0.87198 0.95836 1.22070 0.95128 1.00686 0.99084 1.21692 0.97044 1.00146 0.96768 1.21783 0.96894 0.81817 0.98243 0.90693 1.45802 1.29443 1.08620 1.50859 1.20027 0.84450 0.85762 0.79308 1.90688 1.25720 1.85361 1.41265 1.21447 1.01855 0.92166 1.02531 1.22294 0.96123 0.79943 1.01120 1.87823 1.52226 1.18441 1.71160 1.23472 0.96400 0.85653 1.00342 1.20222 0.78032 0.87006 0.74034 1.93228 1.38668 1.96063 1.87670 1.93205 1.80004 1.64747 1.78059 1.93208 1.96346 1.93054 1.33234 1.21159 0.83807 0.96986 0.94429 1.44026 1.02661 1.64900 1.18965 1.19035 0.95041 1.38103 0.86010 0.91516 1.25064 0.97743 0.99400 0.96970 1.69986 1.23969 1.43496 1.16801 0.86486 0.79640 0.80310 0.81000 1.20955 1.21712 1.21080 0.92954 0.92065 0.94447 0.92842 0.92659 0.93055 0.91167 0.76892 0.88433 0.87715 0.91327 0.91687 0.88396 0.88545 0.88716 0.95748 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 7.95 37.16 0.30 -2.09 16 2 C 0.16 3.15 3.49 -67.60 -0.24 2.91 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.98 5.22 -26.59 -0.14 -2.12 16 5 C -0.12 -1.78 5.58 -26.67 -0.15 -1.93 16 6 C 0.12 2.15 2.81 -67.81 -0.19 1.96 16 7 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.70 -11.57 4.92 -53.69 -0.26 -11.84 16 9 C 0.52 8.89 7.80 -10.99 -0.09 8.81 16 10 O -0.55 -11.39 15.65 5.56 0.09 -11.31 16 11 C -0.14 -1.85 6.07 -27.88 -0.17 -2.02 16 12 C 0.08 1.03 5.23 37.16 0.19 1.23 16 13 O -0.38 -4.56 10.23 -35.23 -0.36 -4.92 16 14 C 0.02 0.18 5.90 37.16 0.22 0.40 16 15 C 0.46 4.67 3.32 37.16 0.12 4.80 16 16 F -0.17 -2.09 17.26 2.25 0.04 -2.05 16 17 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 18 F -0.18 -1.97 17.26 2.25 0.04 -1.93 16 19 C 0.16 3.75 4.88 -3.71 -0.02 3.74 16 20 N -0.58 -13.41 2.91 -164.77 -0.48 -13.89 16 21 C -0.25 -6.48 8.57 -15.06 -0.13 -6.61 16 22 H 0.07 1.68 6.23 -52.48 -0.33 1.35 16 23 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 24 N -0.90 -25.90 11.23 55.49 0.62 -25.28 16 25 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.05 0.92 7.42 -51.93 -0.39 0.54 16 30 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.82 6.41 -51.93 -0.33 0.48 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 5.83 6.78 -40.82 -0.28 5.55 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.09 2.58 6.15 -51.93 -0.32 2.26 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -30.87 373.57 -6.68 -37.55 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.64 Total: 3.98 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.37 Total: 9.17 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.12 Total: -51.01 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.27 Total: -16.23 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.12 Total: -5.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.87 -6.68 -37.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.219 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds