Wall clock time and date at job start Tue Mar 31 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.58459 * 2 1 4 4 C 1.53197 * 109.58194 * 120.27731 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.27771 * 4 2 1 6 6 C 1.53047 * 109.66302 * 298.84731 * 5 4 2 7 7 H 1.08999 * 109.52450 * 181.26751 * 6 5 4 8 8 N 1.46498 * 109.49588 * 301.35268 * 6 5 4 9 9 C 1.34780 * 119.99485 * 204.83369 * 8 6 5 10 10 O 1.21283 * 120.00043 * 0.02562 * 9 8 6 11 11 C 1.50697 * 119.99897 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47320 * 180.02562 * 11 9 8 13 13 O 1.42901 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.42901 * 113.99762 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46923 * 179.97438 * 14 13 12 16 16 F 1.39899 * 109.46789 * 60.00886 * 15 14 13 17 17 F 1.39905 * 109.46869 * 180.02562 * 15 14 13 18 18 F 1.39891 * 109.47084 * 300.00419 * 15 14 13 19 19 C 1.53190 * 109.30574 * 61.30429 * 6 5 4 20 20 N 1.46922 * 109.58870 * 239.71078 * 2 1 3 21 21 C 1.36938 * 120.62907 * 6.58978 * 20 2 1 22 22 H 1.08007 * 119.99809 * 330.15256 * 21 20 2 23 23 C 1.38812 * 120.00272 * 150.16239 * 21 20 2 24 24 N 1.31625 * 119.99667 * 344.50109 * 23 21 20 25 25 Si 1.86795 * 120.00181 * 164.50719 * 23 21 20 26 26 H 1.48502 * 109.47234 * 59.99768 * 25 23 21 27 27 H 1.48499 * 109.47170 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47439 * 299.99570 * 25 23 21 29 29 H 1.08994 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46773 * 60.00190 * 1 2 3 31 31 H 1.09005 * 109.47081 * 300.00681 * 1 2 3 32 32 H 1.08997 * 109.49974 * 294.37540 * 4 2 1 33 33 H 1.08999 * 109.49399 * 54.47841 * 4 2 1 34 34 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 35 35 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 36 36 H 0.96998 * 120.00542 * 24.83861 * 8 6 5 37 37 H 1.09002 * 109.47226 * 300.00444 * 11 9 8 38 38 H 1.08999 * 109.47115 * 60.00170 * 11 9 8 39 39 H 1.08998 * 109.46750 * 299.99917 * 12 11 9 40 40 H 1.08999 * 109.47104 * 59.99899 * 12 11 9 41 41 H 1.09000 * 109.47494 * 300.00211 * 14 13 12 42 42 H 1.09010 * 109.46706 * 60.00226 * 14 13 12 43 43 H 1.09007 * 109.58396 * 185.58099 * 19 6 5 44 44 H 1.09000 * 109.59057 * 65.15157 * 19 6 5 45 45 H 0.96999 * 119.99631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5674 -0.8494 1.1692 6 6 3.9569 -1.6658 -0.0654 7 1 5.0411 -1.7701 -0.1060 8 7 3.3404 -2.9925 0.0113 9 6 3.8952 -4.0321 -0.6430 10 8 4.9049 -3.8692 -1.2948 11 6 3.2608 -5.3968 -0.5646 12 6 4.0826 -6.3894 -1.3894 13 8 3.4806 -7.6833 -1.3156 14 6 4.1736 -8.6898 -2.0563 15 6 3.4448 -10.0266 -1.9056 16 9 2.1396 -9.9037 -2.3942 17 9 4.1236 -11.0122 -2.6304 18 9 3.4050 -10.3863 -0.5544 19 6 3.4651 -0.9454 -1.3247 20 7 2.0226 -0.6981 -1.1952 21 6 1.1537 -1.1108 -2.1699 22 1 0.1398 -1.3787 -1.9113 23 6 1.5760 -1.1851 -3.4901 24 7 2.6866 -0.5836 -3.8606 25 14 0.5681 -2.1386 -4.7409 26 1 -0.7925 -1.5506 -4.8320 27 1 1.2287 -2.0646 -6.0688 28 1 0.4666 -3.5580 -4.3164 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5140 0.8900 32 1 1.7659 -0.1640 2.1371 33 1 1.6029 -1.7236 1.2936 34 1 3.9377 -1.3474 2.0654 35 1 4.0059 0.1460 1.0995 36 1 2.5331 -3.1228 0.5329 37 1 3.2317 -5.7248 0.4745 38 1 2.2458 -5.3488 -0.9590 39 1 4.1120 -6.0615 -2.4285 40 1 5.0974 -6.4372 -0.9947 41 1 4.2050 -8.4093 -3.1092 42 1 5.1905 -8.7858 -1.6754 43 1 3.6518 -1.5692 -2.1989 44 1 3.9904 0.0037 -1.4315 45 1 2.9818 -0.6358 -4.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132148439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:07 Heat of formation + Delta-G solvation = -242.884873 kcal Electronic energy + Delta-G solvation = -30612.717928 eV Core-core repulsion = 25828.845034 eV Total energy + Delta-G solvation = -4783.872893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.14128 -48.69087 -48.62500 -41.04611 -39.49930 -38.86115 -35.74454 -34.47878 -33.37463 -31.96819 -31.68672 -30.17315 -27.83740 -26.76775 -24.92676 -24.28947 -23.84172 -22.13431 -21.54524 -20.33937 -19.70291 -19.67296 -18.87646 -18.38220 -18.03665 -17.40329 -17.27097 -16.78934 -16.49428 -16.03982 -15.70276 -15.52059 -15.46671 -15.43045 -15.07440 -14.97003 -14.87441 -14.80224 -14.78828 -14.63239 -14.41701 -13.99747 -13.98397 -13.57681 -12.94531 -12.85534 -12.76829 -12.58545 -12.55198 -12.48630 -12.40997 -12.38016 -12.10803 -12.06366 -11.54898 -11.19371 -11.03424 -10.94949 -10.82773 -10.49252 -9.89176 -8.54085 -7.80147 -5.25652 1.37053 1.43393 1.45640 1.50698 1.75586 2.07452 2.51977 2.59061 2.83557 2.97378 3.35489 3.44001 3.66146 3.75170 3.99493 4.04024 4.09074 4.09355 4.13444 4.19155 4.23440 4.48440 4.52594 4.67738 4.72774 4.76420 4.82690 4.85971 4.99506 5.07033 5.13002 5.15185 5.30065 5.35880 5.59047 5.64217 5.72212 5.73177 5.76823 5.78854 6.46758 6.72481 7.21476 7.41266 7.95628 8.46652 9.24888 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003049 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.638630 B = 9181.462252 C =10324.645656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.010 0.990 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.066 0.934 8 N -0.691 5.691 9 C 0.512 3.488 10 O -0.593 6.593 11 C -0.131 4.131 12 C 0.086 3.914 13 O -0.388 6.388 14 C 0.015 3.985 15 C 0.463 3.537 16 F -0.188 7.188 17 F -0.175 7.175 18 F -0.183 7.183 19 C 0.172 3.828 20 N -0.594 5.594 21 C -0.238 4.238 22 H 0.076 0.924 23 C -0.052 4.052 24 N -0.937 5.937 25 Si 0.948 3.052 26 H -0.274 1.274 27 H -0.304 1.304 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.131 0.869 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.047 0.953 44 H -0.007 1.007 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -13.884 11.824 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.084 0.916 8 N -0.341 5.341 9 C 0.299 3.701 10 O -0.474 6.474 11 C -0.171 4.171 12 C 0.010 3.990 13 O -0.308 6.308 14 C -0.063 4.063 15 C 0.409 3.591 16 F -0.169 7.169 17 F -0.156 7.156 18 F -0.164 7.164 19 C 0.045 3.955 20 N -0.318 5.318 21 C -0.369 4.369 22 H 0.094 0.906 23 C -0.247 4.247 24 N -0.584 5.584 25 Si 0.778 3.222 26 H -0.200 1.200 27 H -0.231 1.231 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.149 0.851 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.065 0.935 44 H 0.011 0.989 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.197 -13.790 11.342 17.990 hybrid contribution -0.487 -0.268 -1.503 1.603 sum 1.710 -14.058 9.839 17.244 Atomic orbital electron populations 1.21724 0.94763 1.01415 1.00663 1.20774 0.94131 0.93135 0.87231 0.97225 1.21954 0.94762 1.01173 0.97855 1.21660 0.97238 0.99805 0.96118 1.21447 0.96320 0.82651 0.97347 0.91634 1.45726 1.29787 1.07839 1.50764 1.20751 0.83930 0.87200 0.78183 1.90673 1.27742 1.86185 1.42845 1.21399 1.01139 0.89807 1.04730 1.22149 0.96539 0.80291 1.00003 1.87773 1.52930 1.18405 1.71712 1.23707 0.97190 0.84306 1.01092 1.20337 0.77565 0.87497 0.73674 1.93203 1.39741 1.96148 1.87820 1.93212 1.79810 1.64683 1.77936 1.93195 1.96345 1.93169 1.33734 1.20845 0.84120 0.95147 0.95357 1.44242 1.02231 1.65546 1.19752 1.19381 0.95440 1.35702 0.86336 0.90649 1.25722 0.98895 1.01146 0.98903 1.70166 1.26011 1.45991 1.16214 0.85625 0.78600 0.79462 0.78551 1.19977 1.23131 1.20472 0.92795 0.94855 0.90735 0.89338 0.91531 0.89487 0.91251 0.75415 0.85089 0.87734 0.93198 0.90788 0.87105 0.85901 0.93454 0.98949 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 7.95 71.98 0.57 -3.62 16 2 C 0.15 5.56 3.49 44.98 0.16 5.71 16 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 4 C -0.12 -3.13 5.22 30.68 0.16 -2.97 16 5 C -0.11 -2.98 5.58 30.63 0.17 -2.81 16 6 C 0.13 4.59 2.81 45.07 0.13 4.72 16 7 H 0.07 2.47 7.58 -2.39 -0.02 2.45 16 8 N -0.69 -21.84 4.92 -442.16 -2.17 -24.02 16 9 C 0.51 17.15 7.80 87.66 0.68 17.83 16 10 O -0.59 -24.92 15.65 -3.04 -0.05 -24.97 16 11 C -0.13 -3.22 6.07 29.85 0.18 -3.04 16 12 C 0.09 2.08 5.23 71.98 0.38 2.46 16 13 O -0.39 -8.67 10.23 -148.98 -1.52 -10.20 16 14 C 0.02 0.25 5.90 71.98 0.42 0.67 16 15 C 0.46 8.71 3.32 71.98 0.24 8.95 16 16 F -0.19 -4.29 17.26 44.97 0.78 -3.51 16 17 F -0.17 -3.10 17.32 44.97 0.78 -2.32 16 18 F -0.18 -3.79 17.26 44.97 0.78 -3.02 16 19 C 0.17 8.22 4.88 86.36 0.42 8.64 16 20 N -0.59 -27.45 2.91 -675.23 -1.96 -29.41 16 21 C -0.24 -12.29 8.57 84.03 0.72 -11.57 16 22 H 0.08 3.72 6.23 -2.91 -0.02 3.70 16 23 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 24 N -0.94 -56.72 11.23 21.65 0.24 -56.48 16 25 Si 0.95 45.30 29.58 68.60 2.03 47.33 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 29 H 0.05 1.73 7.42 -2.39 -0.02 1.72 16 30 H 0.03 1.25 7.64 -2.38 -0.02 1.23 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.65 6.41 -2.39 -0.02 1.63 16 34 H 0.09 1.83 8.14 -2.38 -0.02 1.82 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.41 10.77 6.78 -92.71 -0.63 10.14 16 37 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 40 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.05 2.72 6.15 -2.38 -0.01 2.70 16 44 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.24 14.60 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -70.80 373.57 3.93 -66.87 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.39 Total: 17.20 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 4.65 Total: 22.52 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.89 Total: -109.90 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.57 Total: -35.16 kcal Atomic # 9 Polarization: -11.18 SS G_CDS: 2.33 Total: -8.85 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -70.80 3.93 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132148439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.018 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds