Wall clock time and date at job start Tue Mar 31 2020 22:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46241 * 2 1 4 4 C 1.53046 * 109.44355 * 119.96655 * 2 1 3 5 5 C 1.52763 * 109.38035 * 181.25342 * 4 2 1 6 6 N 1.46931 * 109.00594 * 305.58646 * 5 4 2 7 7 C 1.34772 * 120.62655 * 233.58057 * 6 5 4 8 8 O 1.21576 * 119.99646 * 183.50560 * 7 6 5 9 9 C 1.47721 * 120.00258 * 3.51030 * 7 6 5 10 10 C 1.39658 * 120.10619 * 129.37240 * 9 7 6 11 11 C 1.37852 * 119.92418 * 180.02562 * 10 9 7 12 12 C 1.38615 * 120.14513 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.88804 * 179.97438 * 12 11 10 14 14 C 1.38839 * 120.21897 * 359.70301 * 12 11 10 15 15 F 1.35095 * 119.96032 * 180.29594 * 14 12 11 16 16 C 1.38057 * 120.07016 * 0.55584 * 14 12 11 17 17 C 1.46924 * 118.73649 * 53.31227 * 6 5 4 18 18 C 1.53039 * 109.46034 * 240.02382 * 2 1 3 19 19 H 1.09000 * 109.49742 * 298.58570 * 18 2 1 20 20 C 1.53002 * 109.49491 * 58.67985 * 18 2 1 21 21 N 1.46499 * 109.47026 * 184.83940 * 20 18 2 22 22 C 1.36936 * 119.99979 * 180.02562 * 21 20 18 23 23 H 1.07992 * 120.00106 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99738 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00168 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99619 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47119 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.46879 * 120.00008 * 26 24 22 29 29 H 1.48503 * 109.46779 * 239.99646 * 26 24 22 30 30 H 1.09001 * 109.47588 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47345 * 299.97616 * 1 2 3 32 32 H 1.09003 * 109.47005 * 59.97384 * 1 2 3 33 33 H 1.09003 * 109.49581 * 301.32283 * 4 2 1 34 34 H 1.08993 * 109.49882 * 61.39586 * 4 2 1 35 35 H 1.08994 * 109.50987 * 185.70322 * 5 4 2 36 36 H 1.09008 * 109.43136 * 65.42136 * 5 4 2 37 37 H 1.08003 * 120.03950 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.92757 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.06514 * 179.74654 * 16 14 12 40 40 H 1.08997 * 109.58839 * 66.43144 * 17 6 5 41 41 H 1.09007 * 109.58183 * 186.70990 * 17 6 5 42 42 H 1.08995 * 109.47013 * 304.83601 * 20 18 2 43 43 H 1.09003 * 109.47302 * 64.83822 * 20 18 2 44 44 H 0.97007 * 120.00067 * 0.02562 * 21 20 18 45 45 H 0.97001 * 120.00176 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7209 1.2503 5 6 3.5668 -0.6928 1.2646 6 7 4.0675 -1.2495 0.0004 7 6 4.9609 -2.2586 0.0007 8 8 5.4158 -2.6679 -1.0498 9 6 5.3872 -2.8674 1.2773 10 6 5.3505 -4.2541 1.4389 11 6 5.7487 -4.8182 2.6320 12 6 6.1849 -4.0121 3.6718 13 9 6.5735 -4.5704 4.8391 14 6 6.2292 -2.6332 3.5158 15 9 6.6609 -1.8529 4.5306 16 6 5.8274 -2.0583 2.3266 17 6 3.5713 -0.6891 -1.2639 18 6 2.0399 -0.7210 -1.2499 19 1 1.6975 -1.7557 -1.2382 20 6 1.5031 -0.0190 -2.4990 21 7 1.8953 -0.7753 -3.6907 22 6 1.5255 -0.3350 -4.9335 23 1 0.9444 0.5696 -5.0351 24 6 1.8975 -1.0514 -6.0628 25 7 2.6061 -2.1536 -5.9391 26 14 1.3937 -0.4503 -7.7582 27 1 0.6083 0.8030 -7.6258 28 1 2.6081 -0.1905 -8.5723 29 1 0.5636 -1.4861 -8.4241 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6569 -0.2206 2.1399 34 1 1.6968 -1.7554 1.2387 35 1 3.9340 -1.2912 2.0983 36 1 3.9096 0.3364 1.3719 37 1 5.0097 -4.8838 0.6303 38 1 5.7199 -5.8905 2.7572 39 1 5.8580 -0.9855 2.2068 40 1 3.9145 0.3403 -1.3670 41 1 3.9438 -1.2837 -2.0981 42 1 0.4159 0.0366 -2.4455 43 1 1.9161 0.9882 -2.5556 44 1 2.4169 -1.5881 -3.5995 45 1 2.8665 -2.6540 -6.7282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132893246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:06 Heat of formation + Delta-G solvation = -87.270956 kcal Electronic energy + Delta-G solvation = -29474.691625 eV Core-core repulsion = 25128.335882 eV Total energy + Delta-G solvation = -4346.355743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.88046 -48.95205 -40.79325 -38.93539 -37.72940 -35.09276 -33.79094 -32.10059 -31.52355 -30.95937 -29.80212 -28.22905 -25.79562 -24.61585 -23.62205 -23.17932 -22.84513 -21.28025 -20.35635 -19.48564 -18.27301 -17.95726 -17.47029 -17.05801 -16.78374 -16.48256 -15.98360 -15.35836 -15.13396 -14.99943 -14.87374 -14.60258 -14.49735 -14.35453 -13.92740 -13.63012 -13.50511 -13.18279 -13.10954 -12.95673 -12.69130 -12.58459 -12.37882 -11.91789 -11.85649 -11.75404 -11.52692 -11.02204 -10.91540 -10.83018 -10.66304 -10.32494 -10.21551 -10.03479 -9.86385 -9.62306 -9.47977 -9.16683 -8.86059 -8.61122 -6.88664 -5.72259 -3.01814 0.22025 0.49980 2.41001 2.77187 3.04367 3.31412 3.45479 3.50605 3.53286 3.86007 4.01847 4.18407 4.47233 4.55610 4.58022 4.65907 4.78872 4.83901 5.06354 5.13289 5.19564 5.23600 5.31900 5.35029 5.52936 5.56727 5.60061 5.63857 5.67109 5.72072 5.77164 5.87504 5.90586 5.99328 6.12454 6.19348 6.20192 6.29316 6.41217 6.50871 6.55119 6.78349 6.86402 7.32563 7.73156 8.05965 8.45520 9.56725 10.14388 10.48376 11.50116 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.002691 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.347524 B =10403.221057 C =11474.176499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.095 3.905 6 N -0.601 5.601 7 C 0.555 3.445 8 O -0.514 6.514 9 C -0.098 4.098 10 C -0.050 4.050 11 C -0.126 4.126 12 C 0.082 3.918 13 F -0.126 7.126 14 C 0.064 3.936 15 F -0.125 7.125 16 C -0.100 4.100 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.028 0.972 43 H 0.019 0.981 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -0.553 24.034 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.028 4.028 6 N -0.333 5.333 7 C 0.341 3.659 8 O -0.389 6.389 9 C -0.101 4.101 10 C -0.069 4.069 11 C -0.145 4.145 12 C 0.062 3.938 13 F -0.104 7.104 14 C 0.044 3.956 15 F -0.104 7.104 16 C -0.120 4.120 17 C -0.001 4.001 18 C -0.121 4.121 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.830 -0.646 23.401 23.721 hybrid contribution 0.059 0.106 -0.440 0.456 sum 3.889 -0.540 22.961 23.294 Atomic orbital electron populations 1.21880 0.94867 1.01998 1.01759 1.21103 0.96079 0.99384 0.93829 0.90995 1.21915 0.94388 1.01776 0.98630 1.21986 0.95281 0.99365 0.86167 1.48119 1.42341 1.34667 1.08201 1.18082 0.79830 0.79839 0.88150 1.90914 1.54529 1.61495 1.31981 1.19920 1.01812 0.94240 0.94167 1.21182 0.95482 0.93277 0.96980 1.21085 1.00439 1.01168 0.91786 1.17896 1.02317 0.89800 0.83793 1.91550 1.88434 1.85229 1.45185 1.17446 1.04047 0.87011 0.87108 1.91556 1.87347 1.73844 1.57636 1.21248 0.98706 1.01613 0.90404 1.21816 0.93819 0.99360 0.85151 1.21721 0.94260 1.00861 0.95275 0.90687 1.20722 0.96878 0.94053 0.85275 1.42422 1.65329 1.29231 1.00812 1.19234 1.27831 1.06398 0.83743 0.91200 1.24753 1.00821 0.97533 0.97812 1.69676 1.42287 1.17385 1.28406 0.86146 0.77630 0.77718 0.84856 1.20612 1.21880 1.21920 0.92753 0.93203 0.91581 0.90706 0.91379 0.89544 0.90956 0.83071 0.82818 0.82868 0.91266 0.87582 0.95456 0.96354 0.78153 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.81 37.16 0.33 -1.30 16 2 C -0.08 -0.97 2.23 -90.57 -0.20 -1.17 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.18 5.34 -26.83 -0.14 -1.33 16 5 C 0.09 0.87 5.34 -3.93 -0.02 0.84 16 6 N -0.60 -7.77 2.98 -174.19 -0.52 -8.28 16 7 C 0.55 7.91 7.23 -12.39 -0.09 7.82 16 8 O -0.51 -9.76 16.47 5.30 0.09 -9.67 16 9 C -0.10 -1.04 5.00 -104.98 -0.52 -1.57 16 10 C -0.05 -0.46 9.73 -39.19 -0.38 -0.85 16 11 C -0.13 -0.97 10.01 -39.58 -0.40 -1.37 16 12 C 0.08 0.74 7.31 -39.22 -0.29 0.45 16 13 F -0.13 -1.23 17.17 2.25 0.04 -1.19 16 14 C 0.06 0.59 7.30 -39.43 -0.29 0.30 16 15 F -0.13 -1.25 17.17 2.25 0.04 -1.21 16 16 C -0.10 -0.89 7.33 -39.13 -0.29 -1.18 16 17 C 0.12 1.89 5.51 -3.71 -0.02 1.87 16 18 C -0.10 -1.55 1.92 -90.50 -0.17 -1.73 16 19 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 20 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 21 N -0.73 -18.41 5.38 -59.91 -0.32 -18.73 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 26 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.66 4.56 -51.93 -0.24 0.43 16 36 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.15 1.14 7.08 -52.49 -0.37 0.77 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 2.12 6.23 -51.92 -0.32 1.80 16 42 H 0.03 0.53 6.15 -51.93 -0.32 0.21 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.33 6.90 -40.82 -0.28 10.05 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -33.03 369.81 -8.21 -41.24 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.06 Total: 6.07 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.75 Total: -3.53 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.12 Total: -54.84 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.03 -8.21 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.030 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds