Wall clock time and date at job start Tue Mar 31 2020 22:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46241 * 2 1 4 4 C 1.53046 * 109.44355 * 119.96655 * 2 1 3 5 5 C 1.52763 * 109.38035 * 181.25342 * 4 2 1 6 6 N 1.46931 * 109.00594 * 305.58646 * 5 4 2 7 7 C 1.34772 * 120.62655 * 233.58057 * 6 5 4 8 8 O 1.21576 * 119.99646 * 183.50560 * 7 6 5 9 9 C 1.47721 * 120.00258 * 3.51030 * 7 6 5 10 10 C 1.39658 * 120.10619 * 129.37240 * 9 7 6 11 11 C 1.37852 * 119.92418 * 180.02562 * 10 9 7 12 12 C 1.38615 * 120.14513 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.88804 * 179.97438 * 12 11 10 14 14 C 1.38839 * 120.21897 * 359.70301 * 12 11 10 15 15 F 1.35095 * 119.96032 * 180.29594 * 14 12 11 16 16 C 1.38057 * 120.07016 * 0.55584 * 14 12 11 17 17 C 1.46924 * 118.73649 * 53.31227 * 6 5 4 18 18 C 1.53039 * 109.46034 * 240.02382 * 2 1 3 19 19 H 1.09000 * 109.49742 * 298.58570 * 18 2 1 20 20 C 1.53002 * 109.49491 * 58.67985 * 18 2 1 21 21 N 1.46499 * 109.47026 * 184.83940 * 20 18 2 22 22 C 1.36936 * 119.99979 * 180.02562 * 21 20 18 23 23 H 1.07992 * 120.00106 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99738 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00168 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99619 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47119 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.46879 * 120.00008 * 26 24 22 29 29 H 1.48503 * 109.46779 * 239.99646 * 26 24 22 30 30 H 1.09001 * 109.47588 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47345 * 299.97616 * 1 2 3 32 32 H 1.09003 * 109.47005 * 59.97384 * 1 2 3 33 33 H 1.09003 * 109.49581 * 301.32283 * 4 2 1 34 34 H 1.08993 * 109.49882 * 61.39586 * 4 2 1 35 35 H 1.08994 * 109.50987 * 185.70322 * 5 4 2 36 36 H 1.09008 * 109.43136 * 65.42136 * 5 4 2 37 37 H 1.08003 * 120.03950 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.92757 * 179.97438 * 11 10 9 39 39 H 1.07998 * 120.06514 * 179.74654 * 16 14 12 40 40 H 1.08997 * 109.58839 * 66.43144 * 17 6 5 41 41 H 1.09007 * 109.58183 * 186.70990 * 17 6 5 42 42 H 1.08995 * 109.47013 * 304.83601 * 20 18 2 43 43 H 1.09003 * 109.47302 * 64.83822 * 20 18 2 44 44 H 0.97007 * 120.00067 * 0.02562 * 21 20 18 45 45 H 0.97001 * 120.00176 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7209 1.2503 5 6 3.5668 -0.6928 1.2646 6 7 4.0675 -1.2495 0.0004 7 6 4.9609 -2.2586 0.0007 8 8 5.4158 -2.6679 -1.0498 9 6 5.3872 -2.8674 1.2773 10 6 5.3505 -4.2541 1.4389 11 6 5.7487 -4.8182 2.6320 12 6 6.1849 -4.0121 3.6718 13 9 6.5735 -4.5704 4.8391 14 6 6.2292 -2.6332 3.5158 15 9 6.6609 -1.8529 4.5306 16 6 5.8274 -2.0583 2.3266 17 6 3.5713 -0.6891 -1.2639 18 6 2.0399 -0.7210 -1.2499 19 1 1.6975 -1.7557 -1.2382 20 6 1.5031 -0.0190 -2.4990 21 7 1.8953 -0.7753 -3.6907 22 6 1.5255 -0.3350 -4.9335 23 1 0.9444 0.5696 -5.0351 24 6 1.8975 -1.0514 -6.0628 25 7 2.6061 -2.1536 -5.9391 26 14 1.3937 -0.4503 -7.7582 27 1 0.6083 0.8030 -7.6258 28 1 2.6081 -0.1905 -8.5723 29 1 0.5636 -1.4861 -8.4241 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6569 -0.2206 2.1399 34 1 1.6968 -1.7554 1.2387 35 1 3.9340 -1.2912 2.0983 36 1 3.9096 0.3364 1.3719 37 1 5.0097 -4.8838 0.6303 38 1 5.7199 -5.8905 2.7572 39 1 5.8580 -0.9855 2.2068 40 1 3.9145 0.3403 -1.3670 41 1 3.9438 -1.2837 -2.0981 42 1 0.4159 0.0366 -2.4455 43 1 1.9161 0.9882 -2.5556 44 1 2.4169 -1.5881 -3.5995 45 1 2.8665 -2.6540 -6.7282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132893246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:05 Heat of formation + Delta-G solvation = -107.192039 kcal Electronic energy + Delta-G solvation = -29475.555468 eV Core-core repulsion = 25128.335882 eV Total energy + Delta-G solvation = -4347.219586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.61434 -49.68864 -41.80763 -39.86193 -38.83278 -36.65936 -35.16203 -33.55414 -32.53308 -31.77778 -31.26903 -29.25963 -27.37586 -25.56834 -25.00942 -24.21339 -23.77460 -22.58999 -21.45215 -20.52874 -19.21833 -18.99406 -18.73550 -18.26246 -17.62134 -17.36419 -17.01885 -16.74018 -16.21193 -16.08612 -15.78917 -15.61639 -15.52328 -15.45456 -15.18619 -15.06124 -14.53803 -14.36177 -14.19907 -14.08310 -13.98241 -13.67693 -13.35207 -13.04859 -12.99685 -12.77844 -12.66684 -12.61182 -12.50777 -12.13343 -11.98669 -11.90198 -11.79314 -11.38829 -11.19878 -11.03531 -10.90782 -10.20117 -9.96841 -9.70370 -8.98274 -7.93789 -5.23451 -0.54837 -0.18758 1.40048 1.46088 1.47564 1.57592 1.78367 2.20836 2.55973 2.59192 3.09283 3.23875 3.39520 3.45904 3.66522 3.76808 3.79672 3.84927 3.88346 4.04192 4.20574 4.26098 4.38425 4.43779 4.52743 4.54276 4.60458 4.69455 4.74485 4.79886 4.81972 4.83866 4.93978 4.97391 5.01119 5.08568 5.14469 5.25248 5.28267 5.41456 5.49148 5.50051 5.51862 5.59245 6.27035 6.27981 6.96720 7.33012 8.10043 8.31512 9.29830 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.002691 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.347524 B =10403.221057 C =11474.176499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.089 3.911 6 N -0.596 5.596 7 C 0.551 3.449 8 O -0.575 6.575 9 C -0.109 4.109 10 C -0.053 4.053 11 C -0.110 4.110 12 C 0.082 3.918 13 F -0.129 7.129 14 C 0.062 3.938 15 F -0.128 7.128 16 C -0.088 4.088 17 C 0.127 3.873 18 C -0.088 4.088 19 H 0.053 0.947 20 C 0.157 3.843 21 N -0.748 5.748 22 C -0.242 4.242 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.974 3.026 27 H -0.263 1.263 28 H -0.295 1.295 29 H -0.294 1.294 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.371 0.629 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 0.774 26.818 26.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.104 0.896 4 C -0.161 4.161 5 C -0.032 4.032 6 N -0.327 5.327 7 C 0.340 3.660 8 O -0.455 6.455 9 C -0.112 4.112 10 C -0.072 4.072 11 C -0.129 4.129 12 C 0.062 3.938 13 F -0.107 7.107 14 C 0.042 3.958 15 F -0.107 7.107 16 C -0.107 4.107 17 C 0.004 3.996 18 C -0.108 4.108 19 H 0.071 0.929 20 C 0.030 3.970 21 N -0.391 5.391 22 C -0.374 4.374 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.803 3.197 27 H -0.187 1.187 28 H -0.223 1.223 29 H -0.221 1.221 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.167 0.833 38 H 0.199 0.801 39 H 0.188 0.812 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.014 0.740 26.259 26.442 hybrid contribution 0.284 -0.286 -1.212 1.277 sum 3.298 0.454 25.047 25.267 Atomic orbital electron populations 1.21856 0.94331 1.01708 1.02379 1.21096 0.96442 0.99715 0.92508 0.89619 1.21910 0.94099 1.01459 0.98602 1.22353 0.95453 1.00867 0.84527 1.48177 1.41675 1.34186 1.08621 1.18650 0.79215 0.79450 0.88705 1.90882 1.56847 1.63343 1.34472 1.19620 1.03763 0.94896 0.92946 1.21250 0.95514 0.92791 0.97633 1.21249 0.98807 1.02394 0.90409 1.18049 1.02058 0.89892 0.83848 1.91548 1.88459 1.85277 1.45432 1.17449 1.04216 0.87086 0.87039 1.91552 1.87428 1.73978 1.57743 1.21241 0.97760 1.02214 0.89508 1.21472 0.94130 0.98668 0.85324 1.21562 0.93709 0.99730 0.95751 0.92886 1.20922 0.97200 0.93907 0.84945 1.42683 1.65125 1.29268 1.01982 1.19683 1.26574 1.06134 0.84989 0.90343 1.25621 1.01678 0.98039 1.01800 1.69859 1.44312 1.19018 1.28996 0.85061 0.77046 0.77684 0.79903 1.18679 1.22257 1.22099 0.93530 0.90297 0.93211 0.87066 0.92167 0.87535 0.88503 0.83270 0.80077 0.81191 0.90637 0.92683 0.94853 0.95816 0.79773 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.81 71.98 0.63 -2.23 16 2 C -0.08 -1.61 2.23 -10.76 -0.02 -1.63 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.12 -1.84 5.34 30.53 0.16 -1.67 16 5 C 0.09 1.36 5.34 86.22 0.46 1.82 16 6 N -0.60 -15.29 2.98 -823.27 -2.45 -17.74 16 7 C 0.55 16.18 7.23 86.75 0.63 16.81 16 8 O -0.58 -23.50 16.47 -3.96 -0.07 -23.57 16 9 C -0.11 -2.23 5.00 -20.09 -0.10 -2.33 16 10 C -0.05 -0.93 9.73 22.52 0.22 -0.71 16 11 C -0.11 -1.45 10.01 22.27 0.22 -1.23 16 12 C 0.08 1.28 7.31 22.50 0.16 1.44 16 13 F -0.13 -2.22 17.17 44.97 0.77 -1.44 16 14 C 0.06 1.00 7.30 22.37 0.16 1.17 16 15 F -0.13 -2.25 17.17 44.97 0.77 -1.48 16 16 C -0.09 -1.38 7.33 22.56 0.17 -1.21 16 17 C 0.13 4.16 5.51 86.36 0.48 4.63 16 18 C -0.09 -2.72 1.92 -10.72 -0.02 -2.74 16 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.16 6.10 5.41 86.38 0.47 6.57 16 21 N -0.75 -38.99 5.38 -343.45 -1.85 -40.83 16 22 C -0.24 -13.78 9.99 84.04 0.84 -12.94 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 25 N -0.97 -62.09 13.06 21.65 0.28 -61.81 16 26 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 27 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 29 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.14 6.30 -2.39 -0.02 1.12 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.27 4.56 -2.39 -0.01 1.26 16 36 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.17 2.03 7.08 -2.91 -0.02 2.01 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 2.40 6.23 -2.38 -0.01 2.38 16 42 H 0.03 1.28 6.15 -2.39 -0.01 1.27 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.37 21.19 6.90 -92.70 -0.64 20.55 16 45 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.93 369.81 4.81 -71.13 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.39 Total: 24.93 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 4.92 Total: 1.50 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.02 Total: -120.38 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.07 Total: -23.57 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 1.54 Total: -2.92 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -75.93 4.81 -71.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.066 kcal (2) G-P(sol) polarization free energy of solvation -75.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds