Wall clock time and date at job start Tue Mar 31 2020 22:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46009 * 2 1 4 4 C 1.53042 * 109.45996 * 240.02712 * 2 1 3 5 5 C 1.53187 * 109.31187 * 178.63073 * 4 2 1 6 6 N 1.46918 * 108.77860 * 54.63831 * 5 4 2 7 7 C 1.34779 * 120.63646 * 126.37118 * 6 5 4 8 8 O 1.21562 * 120.00186 * 176.23006 * 7 6 5 9 9 C 1.47727 * 119.99550 * 356.22715 * 7 6 5 10 10 C 1.39649 * 120.10954 * 230.58151 * 9 7 6 11 11 C 1.37856 * 119.92662 * 179.69922 * 10 9 7 12 12 C 1.38611 * 120.14442 * 0.57740 * 11 10 9 13 13 F 1.35097 * 119.88848 * 179.69927 * 12 11 10 14 14 C 1.38834 * 120.21879 * 359.71958 * 12 11 10 15 15 F 1.35104 * 119.96045 * 179.97438 * 14 12 11 16 16 C 1.38055 * 120.07364 * 359.97438 * 14 12 11 17 17 C 1.46935 * 118.73605 * 306.39074 * 6 5 4 18 18 C 1.53073 * 109.43891 * 119.82551 * 2 1 3 19 19 H 1.08996 * 109.39015 * 61.36014 * 18 2 1 20 20 C 1.52999 * 109.62305 * 301.24966 * 18 2 1 21 21 N 1.46494 * 109.47177 * 175.10879 * 20 18 2 22 22 C 1.36945 * 120.00276 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99371 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00391 * 180.02562 * 22 21 20 25 25 N 1.31625 * 119.99684 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00222 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47013 * 59.99910 * 26 24 22 28 28 H 1.48495 * 109.47044 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47050 * 300.00367 * 26 24 22 30 30 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47124 * 299.97197 * 1 2 3 32 32 H 1.09002 * 109.47083 * 59.97062 * 1 2 3 33 33 H 1.08999 * 109.49446 * 58.67600 * 4 2 1 34 34 H 1.09000 * 109.49737 * 298.58413 * 4 2 1 35 35 H 1.08997 * 109.58716 * 294.84332 * 5 4 2 36 36 H 1.09005 * 109.70138 * 174.49585 * 5 4 2 37 37 H 1.08008 * 120.03830 * 359.97438 * 10 9 7 38 38 H 1.08000 * 119.92560 * 180.27543 * 11 10 9 39 39 H 1.08003 * 120.07367 * 180.02562 * 16 14 12 40 40 H 1.09001 * 109.58712 * 173.39951 * 17 6 5 41 41 H 1.09009 * 109.58323 * 293.67970 * 17 6 5 42 42 H 1.08998 * 109.47403 * 295.11011 * 20 18 2 43 43 H 1.08996 * 109.47113 * 55.10648 * 20 18 2 44 44 H 0.97005 * 120.00396 * 0.02562 * 21 20 18 45 45 H 0.97002 * 119.99942 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6891 -1.2640 6 7 4.0676 -1.2494 0.0003 7 6 4.9610 -2.2586 0.0005 8 8 5.4157 -2.6677 1.0510 9 6 5.3875 -2.8676 -1.2761 10 6 5.3518 -4.2543 -1.4372 11 6 5.7448 -4.8182 -2.6322 12 6 6.1867 -4.0126 -3.6700 13 9 6.5764 -4.5711 -4.8367 14 6 6.2305 -2.6337 -3.5143 15 9 6.6626 -1.8535 -4.5291 16 6 5.8331 -2.0590 -2.3236 17 6 3.5710 -0.6890 1.2645 18 6 2.0394 -0.7179 1.2523 19 1 1.6952 -1.7520 1.2418 20 6 1.5054 -0.0138 2.5012 21 7 1.8975 -0.7697 3.6933 22 6 1.5300 -0.3276 4.9362 23 1 0.9507 0.5783 5.0374 24 6 1.9020 -1.0435 6.0657 25 7 2.6084 -2.1473 5.9421 26 14 1.4000 -0.4407 7.7609 27 1 -0.0813 -0.3802 7.8462 28 1 1.9169 -1.3761 8.7920 29 1 1.9648 0.9131 7.9922 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6574 -0.2208 -2.1398 34 1 1.6975 -1.7557 -1.2383 35 1 3.9145 0.3403 -1.3671 36 1 3.9437 -1.2836 -2.0983 37 1 5.0124 -4.8840 -0.6280 38 1 5.7129 -5.8903 -2.7583 39 1 5.8668 -0.9863 -2.2026 40 1 3.9412 -1.2850 2.0988 41 1 3.9163 0.3397 1.3688 42 1 1.9204 0.9926 2.5565 43 1 0.4183 0.0440 2.4489 44 1 2.4182 -1.5832 3.6023 45 1 2.8687 -2.6474 6.7315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132893250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:08 Heat of formation + Delta-G solvation = -87.150241 kcal Electronic energy + Delta-G solvation = -29471.353207 eV Core-core repulsion = 25125.002699 eV Total energy + Delta-G solvation = -4346.350508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87949 -48.95101 -40.78686 -38.92735 -37.72543 -35.08607 -33.78806 -32.09123 -31.52005 -30.95915 -29.78819 -28.22008 -25.79312 -24.61789 -23.62105 -23.18197 -22.84400 -21.27630 -20.35600 -19.48069 -18.27340 -17.95511 -17.46975 -17.05451 -16.78645 -16.47889 -15.98280 -15.35756 -15.13206 -14.99865 -14.86653 -14.59872 -14.49719 -14.35134 -13.93283 -13.62202 -13.50382 -13.18108 -13.10068 -12.95047 -12.69247 -12.57990 -12.38108 -11.91607 -11.85664 -11.75698 -11.52144 -11.01733 -10.90838 -10.81957 -10.64763 -10.35072 -10.20782 -10.06502 -9.87688 -9.61448 -9.47879 -9.16584 -8.84879 -8.60836 -6.88518 -5.71709 -3.01434 0.22082 0.49983 2.41102 2.77261 3.04331 3.31441 3.46333 3.50503 3.52047 3.85962 4.01879 4.18506 4.47281 4.55723 4.58223 4.66245 4.78247 4.83940 5.06548 5.13423 5.19646 5.23481 5.31729 5.34988 5.52953 5.56818 5.60168 5.64053 5.67203 5.72165 5.77183 5.87620 5.90861 5.99511 6.12697 6.19471 6.20286 6.29480 6.41393 6.51059 6.55398 6.78583 6.86625 7.32694 7.72339 8.06028 8.46175 9.57087 10.14734 10.48728 11.50533 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002690 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.853533 B =10406.924704 C =11477.386291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.095 3.905 6 N -0.601 5.601 7 C 0.555 3.445 8 O -0.514 6.514 9 C -0.098 4.098 10 C -0.050 4.050 11 C -0.126 4.126 12 C 0.082 3.918 13 F -0.126 7.126 14 C 0.064 3.936 15 F -0.125 7.125 16 C -0.100 4.100 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.019 0.981 43 H 0.028 0.972 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -0.620 -23.987 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.028 4.028 6 N -0.333 5.333 7 C 0.341 3.659 8 O -0.389 6.389 9 C -0.101 4.101 10 C -0.069 4.069 11 C -0.145 4.145 12 C 0.062 3.938 13 F -0.104 7.104 14 C 0.044 3.956 15 F -0.104 7.104 16 C -0.120 4.120 17 C -0.002 4.002 18 C -0.121 4.121 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.036 0.964 43 H 0.045 0.955 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.864 -0.731 -23.346 23.675 hybrid contribution 0.052 0.132 0.434 0.457 sum 3.915 -0.598 -22.912 23.252 Atomic orbital electron populations 1.21880 0.94871 1.01994 1.01762 1.21105 0.96070 0.99402 0.93831 0.91018 1.21979 0.94315 1.01758 0.98586 1.22072 0.95275 0.99322 0.86154 1.48117 1.42421 1.34590 1.08207 1.18080 0.79810 0.79863 0.88145 1.90910 1.54500 1.61530 1.31975 1.19923 1.01775 0.94243 0.94205 1.21181 0.95507 0.93274 0.96954 1.21085 1.00427 1.01178 0.91795 1.17893 1.02278 0.89796 0.83831 1.91550 1.88396 1.85217 1.45235 1.17445 1.04073 0.87014 0.87084 1.91558 1.87347 1.73850 1.57632 1.21247 0.98713 1.01612 0.90397 1.21814 0.93840 0.99360 0.85145 1.21724 0.94250 1.00878 0.95251 0.90707 1.20712 0.96881 0.94042 0.85266 1.42406 1.65463 1.29132 1.00768 1.19146 1.28109 1.06346 0.83761 0.91310 1.24749 1.00795 0.97506 0.97803 1.69662 1.42251 1.17254 1.28641 0.86286 0.77960 0.77672 0.84350 1.21340 1.21708 1.21299 0.92756 0.91581 0.93205 0.90734 0.91357 0.90949 0.89539 0.83069 0.82818 0.82870 0.87597 0.91272 0.96368 0.95466 0.78147 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.82 37.16 0.33 -1.31 16 2 C -0.09 -0.97 2.23 -90.56 -0.20 -1.17 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.18 5.36 -26.61 -0.14 -1.32 16 5 C 0.09 0.86 5.38 -3.72 -0.02 0.84 16 6 N -0.60 -7.77 2.97 -173.92 -0.52 -8.29 16 7 C 0.55 7.92 7.23 -12.38 -0.09 7.83 16 8 O -0.51 -9.75 16.47 5.31 0.09 -9.67 16 9 C -0.10 -1.04 5.00 -104.97 -0.52 -1.57 16 10 C -0.05 -0.46 9.73 -39.19 -0.38 -0.85 16 11 C -0.13 -0.97 10.01 -39.58 -0.40 -1.37 16 12 C 0.08 0.74 7.31 -39.22 -0.29 0.46 16 13 F -0.13 -1.23 17.17 2.25 0.04 -1.19 16 14 C 0.06 0.59 7.30 -39.43 -0.29 0.30 16 15 F -0.13 -1.25 17.18 2.25 0.04 -1.21 16 16 C -0.10 -0.89 7.33 -39.13 -0.29 -1.18 16 17 C 0.12 1.89 5.50 -3.71 -0.02 1.87 16 18 C -0.10 -1.55 1.92 -90.48 -0.17 -1.73 16 19 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 20 C 0.16 3.06 5.42 -4.05 -0.02 3.04 16 21 N -0.73 -18.43 5.38 -59.91 -0.32 -18.75 16 22 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 26 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.67 4.55 -51.93 -0.24 0.43 16 37 H 0.15 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.15 1.14 7.08 -52.48 -0.37 0.77 16 40 H 0.11 2.12 6.22 -51.93 -0.32 1.80 16 41 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.53 6.16 -51.93 -0.32 0.21 16 44 H 0.38 10.34 6.89 -40.82 -0.28 10.06 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -33.00 369.88 -8.21 -41.20 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.06 Total: 6.17 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.75 Total: -3.54 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.11 Total: -54.90 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.00 -8.21 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.947 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds