Wall clock time and date at job start Tue Mar 31 2020 22:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46009 * 2 1 4 4 C 1.53042 * 109.45996 * 240.02712 * 2 1 3 5 5 C 1.53187 * 109.31187 * 178.63073 * 4 2 1 6 6 N 1.46918 * 108.77860 * 54.63831 * 5 4 2 7 7 C 1.34779 * 120.63646 * 126.37118 * 6 5 4 8 8 O 1.21562 * 120.00186 * 176.23006 * 7 6 5 9 9 C 1.47727 * 119.99550 * 356.22715 * 7 6 5 10 10 C 1.39649 * 120.10954 * 230.58151 * 9 7 6 11 11 C 1.37856 * 119.92662 * 179.69922 * 10 9 7 12 12 C 1.38611 * 120.14442 * 0.57740 * 11 10 9 13 13 F 1.35097 * 119.88848 * 179.69927 * 12 11 10 14 14 C 1.38834 * 120.21879 * 359.71958 * 12 11 10 15 15 F 1.35104 * 119.96045 * 179.97438 * 14 12 11 16 16 C 1.38055 * 120.07364 * 359.97438 * 14 12 11 17 17 C 1.46935 * 118.73605 * 306.39074 * 6 5 4 18 18 C 1.53073 * 109.43891 * 119.82551 * 2 1 3 19 19 H 1.08996 * 109.39015 * 61.36014 * 18 2 1 20 20 C 1.52999 * 109.62305 * 301.24966 * 18 2 1 21 21 N 1.46494 * 109.47177 * 175.10879 * 20 18 2 22 22 C 1.36945 * 120.00276 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99371 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00391 * 180.02562 * 22 21 20 25 25 N 1.31625 * 119.99684 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00222 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47013 * 59.99910 * 26 24 22 28 28 H 1.48495 * 109.47044 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47050 * 300.00367 * 26 24 22 30 30 H 1.09002 * 109.47320 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47124 * 299.97197 * 1 2 3 32 32 H 1.09002 * 109.47083 * 59.97062 * 1 2 3 33 33 H 1.08999 * 109.49446 * 58.67600 * 4 2 1 34 34 H 1.09000 * 109.49737 * 298.58413 * 4 2 1 35 35 H 1.08997 * 109.58716 * 294.84332 * 5 4 2 36 36 H 1.09005 * 109.70138 * 174.49585 * 5 4 2 37 37 H 1.08008 * 120.03830 * 359.97438 * 10 9 7 38 38 H 1.08000 * 119.92560 * 180.27543 * 11 10 9 39 39 H 1.08003 * 120.07367 * 180.02562 * 16 14 12 40 40 H 1.09001 * 109.58712 * 173.39951 * 17 6 5 41 41 H 1.09009 * 109.58323 * 293.67970 * 17 6 5 42 42 H 1.08998 * 109.47403 * 295.11011 * 20 18 2 43 43 H 1.08996 * 109.47113 * 55.10648 * 20 18 2 44 44 H 0.97005 * 120.00396 * 0.02562 * 21 20 18 45 45 H 0.97002 * 119.99942 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5713 -0.6891 -1.2640 6 7 4.0676 -1.2494 0.0003 7 6 4.9610 -2.2586 0.0005 8 8 5.4157 -2.6677 1.0510 9 6 5.3875 -2.8676 -1.2761 10 6 5.3518 -4.2543 -1.4372 11 6 5.7448 -4.8182 -2.6322 12 6 6.1867 -4.0126 -3.6700 13 9 6.5764 -4.5711 -4.8367 14 6 6.2305 -2.6337 -3.5143 15 9 6.6626 -1.8535 -4.5291 16 6 5.8331 -2.0590 -2.3236 17 6 3.5710 -0.6890 1.2645 18 6 2.0394 -0.7179 1.2523 19 1 1.6952 -1.7520 1.2418 20 6 1.5054 -0.0138 2.5012 21 7 1.8975 -0.7697 3.6933 22 6 1.5300 -0.3276 4.9362 23 1 0.9507 0.5783 5.0374 24 6 1.9020 -1.0435 6.0657 25 7 2.6084 -2.1473 5.9421 26 14 1.4000 -0.4407 7.7609 27 1 -0.0813 -0.3802 7.8462 28 1 1.9169 -1.3761 8.7920 29 1 1.9648 0.9131 7.9922 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6574 -0.2208 -2.1398 34 1 1.6975 -1.7557 -1.2383 35 1 3.9145 0.3403 -1.3671 36 1 3.9437 -1.2836 -2.0983 37 1 5.0124 -4.8840 -0.6280 38 1 5.7129 -5.8903 -2.7583 39 1 5.8668 -0.9863 -2.2026 40 1 3.9412 -1.2850 2.0988 41 1 3.9163 0.3397 1.3688 42 1 1.9204 0.9926 2.5565 43 1 0.4183 0.0440 2.4489 44 1 2.4182 -1.5832 3.6023 45 1 2.8687 -2.6474 6.7315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132893250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:07 Heat of formation + Delta-G solvation = -107.034450 kcal Electronic energy + Delta-G solvation = -29472.215451 eV Core-core repulsion = 25125.002699 eV Total energy + Delta-G solvation = -4347.212752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.61359 -49.68783 -41.80228 -39.85515 -38.83121 -36.65276 -35.16127 -33.54652 -32.53185 -31.77762 -31.25621 -29.24976 -27.37391 -25.56892 -25.01001 -24.21467 -23.77731 -22.58996 -21.45092 -20.52701 -19.21559 -18.99348 -18.73372 -18.26243 -17.62496 -17.36056 -17.02004 -16.73725 -16.21004 -16.08611 -15.78933 -15.61567 -15.52373 -15.45423 -15.18019 -15.05693 -14.53696 -14.35763 -14.19274 -14.08495 -13.98243 -13.67487 -13.35467 -13.04142 -12.97646 -12.73528 -12.67204 -12.59905 -12.51706 -12.20384 -12.01056 -11.90445 -11.79053 -11.38963 -11.19662 -11.03056 -10.89077 -10.20076 -9.96791 -9.70270 -8.98161 -7.93357 -5.23219 -0.54803 -0.18790 1.40086 1.45979 1.49772 1.56003 1.78260 2.20788 2.56374 2.59188 3.09205 3.23879 3.39539 3.45904 3.66249 3.76838 3.79927 3.84886 3.88261 4.03530 4.20602 4.26128 4.38354 4.43727 4.52678 4.54223 4.60279 4.69432 4.74477 4.79628 4.81956 4.83783 4.93884 4.97319 5.01107 5.08487 5.14421 5.25246 5.28372 5.41413 5.49111 5.49525 5.51776 5.59172 6.27138 6.28042 6.96682 7.33165 8.10305 8.31802 9.29857 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017029 B = 0.002690 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.853533 B =10406.924704 C =11477.386291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.122 4.122 5 C 0.089 3.911 6 N -0.596 5.596 7 C 0.551 3.449 8 O -0.575 6.575 9 C -0.109 4.109 10 C -0.053 4.053 11 C -0.110 4.110 12 C 0.082 3.918 13 F -0.129 7.129 14 C 0.062 3.938 15 F -0.129 7.129 16 C -0.088 4.088 17 C 0.127 3.873 18 C -0.088 4.088 19 H 0.052 0.948 20 C 0.157 3.843 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.078 0.922 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.975 3.025 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.277 1.277 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.150 0.850 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.371 0.629 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 0.686 -26.744 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.160 4.160 5 C -0.032 4.032 6 N -0.327 5.327 7 C 0.340 3.660 8 O -0.455 6.455 9 C -0.112 4.112 10 C -0.072 4.072 11 C -0.129 4.129 12 C 0.062 3.938 13 F -0.107 7.107 14 C 0.042 3.958 15 F -0.107 7.107 16 C -0.107 4.107 17 C 0.004 3.996 18 C -0.107 4.107 19 H 0.071 0.929 20 C 0.031 3.969 21 N -0.390 5.390 22 C -0.377 4.377 23 H 0.096 0.904 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.202 1.202 28 H -0.224 1.224 29 H -0.203 1.203 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.167 0.833 38 H 0.199 0.801 39 H 0.188 0.812 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.202 0.798 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.061 0.636 -26.177 26.363 hybrid contribution 0.272 -0.252 1.198 1.254 sum 3.333 0.384 -24.979 25.203 Atomic orbital electron populations 1.21856 0.94335 1.01710 1.02375 1.21098 0.96435 0.99733 0.92501 0.89654 1.21974 0.94031 1.01443 0.98552 1.22439 0.95445 1.00809 0.84519 1.48175 1.41752 1.34118 1.08622 1.18648 0.79192 0.79472 0.88703 1.90878 1.56816 1.63371 1.34465 1.19621 1.03726 0.94899 0.92981 1.21250 0.95536 0.92787 0.97611 1.21249 0.98793 1.02403 0.90412 1.18046 1.02022 0.89887 0.83884 1.91548 1.88422 1.85265 1.45480 1.17448 1.04242 0.87089 0.87012 1.91555 1.87427 1.73984 1.57738 1.21240 0.97770 1.02213 0.89509 1.21468 0.94150 0.98652 0.85324 1.21563 0.93705 0.99738 0.95735 0.92903 1.20910 0.97189 0.93896 0.84945 1.42665 1.65272 1.29169 1.01937 1.19617 1.26908 1.06144 0.85018 0.90380 1.25625 1.01621 0.97994 1.01824 1.69853 1.44280 1.18887 1.29160 0.85190 0.77964 0.77137 0.79342 1.20157 1.22397 1.20270 0.93525 0.93219 0.90297 0.87100 0.92138 0.88513 0.87523 0.83266 0.80073 0.81197 0.92695 0.90665 0.95845 0.94874 0.79772 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.82 71.98 0.64 -2.24 16 2 C -0.08 -1.62 2.23 -10.75 -0.02 -1.64 16 3 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.12 -1.83 5.36 30.67 0.16 -1.67 16 5 C 0.09 1.36 5.38 86.36 0.46 1.83 16 6 N -0.60 -15.31 2.97 -822.44 -2.45 -17.76 16 7 C 0.55 16.19 7.23 86.75 0.63 16.82 16 8 O -0.58 -23.50 16.47 -3.91 -0.06 -23.56 16 9 C -0.11 -2.24 5.00 -20.09 -0.10 -2.34 16 10 C -0.05 -0.93 9.73 22.52 0.22 -0.71 16 11 C -0.11 -1.45 10.01 22.27 0.22 -1.23 16 12 C 0.08 1.28 7.31 22.50 0.16 1.45 16 13 F -0.13 -2.22 17.17 44.97 0.77 -1.44 16 14 C 0.06 1.00 7.30 22.37 0.16 1.17 16 15 F -0.13 -2.25 17.18 44.97 0.77 -1.48 16 16 C -0.09 -1.38 7.33 22.56 0.17 -1.22 16 17 C 0.13 4.16 5.50 86.36 0.48 4.64 16 18 C -0.09 -2.72 1.92 -10.71 -0.02 -2.74 16 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.16 6.14 5.42 86.38 0.47 6.60 16 21 N -0.75 -39.06 5.38 -343.47 -1.85 -40.90 16 22 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 25 N -0.97 -62.13 13.06 21.65 0.28 -61.84 16 26 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 28 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.14 6.30 -2.39 -0.02 1.13 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.27 4.55 -2.38 -0.01 1.26 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.17 2.03 7.08 -2.91 -0.02 2.01 16 40 H 0.05 2.40 6.22 -2.39 -0.01 2.38 16 41 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.03 1.28 6.16 -2.39 -0.01 1.27 16 44 H 0.37 21.22 6.89 -92.70 -0.64 20.58 16 45 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -75.87 369.88 4.82 -71.05 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.39 Total: 25.27 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 4.93 Total: 1.38 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -4.01 Total: -120.51 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 1.54 Total: -2.92 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.87 4.82 -71.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.981 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds