Wall clock time and date at job start Tue Mar 31 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.44383 * 2 1 4 4 C 1.53037 * 109.43310 * 119.98058 * 2 1 3 5 5 C 1.53193 * 109.34019 * 58.68836 * 4 2 1 6 6 N 1.46928 * 108.77424 * 54.61867 * 5 4 2 7 7 C 1.34776 * 120.63240 * 126.41406 * 6 5 4 8 8 O 1.21560 * 119.99772 * 176.15871 * 7 6 5 9 9 C 1.47726 * 119.99655 * 356.16109 * 7 6 5 10 10 C 1.39651 * 120.11212 * 50.76101 * 9 7 6 11 11 C 1.37850 * 119.92597 * 179.72415 * 10 9 7 12 12 C 1.38613 * 120.14776 * 0.57730 * 11 10 9 13 13 F 1.35095 * 119.89170 * 179.72529 * 12 11 10 14 14 C 1.38844 * 120.21825 * 359.69412 * 12 11 10 15 15 F 1.35093 * 119.96256 * 180.02562 * 14 12 11 16 16 C 1.38058 * 120.07189 * 0.02562 * 14 12 11 17 17 C 1.46931 * 118.73827 * 306.39167 * 6 5 4 18 18 C 1.53035 * 109.45949 * 240.03713 * 2 1 3 19 19 H 1.09002 * 109.49679 * 181.35849 * 18 2 1 20 20 C 1.53001 * 109.49897 * 61.29247 * 18 2 1 21 21 N 1.46504 * 109.46864 * 175.06241 * 20 18 2 22 22 C 1.36937 * 120.00062 * 179.97438 * 21 20 18 23 23 H 1.08007 * 119.99454 * 0.02562 * 22 21 20 24 24 C 1.38803 * 120.00344 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00212 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00245 * 179.72819 * 24 22 21 27 27 H 1.48501 * 109.47256 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47664 * 120.00111 * 26 24 22 29 29 H 1.48507 * 109.47234 * 240.00159 * 26 24 22 30 30 H 1.08993 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46958 * 299.96390 * 1 2 3 32 32 H 1.08998 * 109.47035 * 59.96141 * 1 2 3 33 33 H 1.09004 * 109.49917 * 298.71999 * 4 2 1 34 34 H 1.09002 * 109.49594 * 178.65900 * 4 2 1 35 35 H 1.09000 * 109.58593 * 294.83529 * 5 4 2 36 36 H 1.08995 * 109.58657 * 174.40444 * 5 4 2 37 37 H 1.07998 * 120.03229 * 359.97438 * 10 9 7 38 38 H 1.07992 * 119.92890 * 180.31897 * 11 10 9 39 39 H 1.08001 * 120.07248 * 179.97438 * 16 14 12 40 40 H 1.08997 * 109.58636 * 293.82044 * 17 6 5 41 41 H 1.08999 * 109.58490 * 173.39615 * 17 6 5 42 42 H 1.08999 * 109.46875 * 55.06707 * 20 18 2 43 43 H 1.08992 * 109.47199 * 295.06118 * 20 18 2 44 44 H 0.96998 * 120.00196 * 0.02562 * 21 20 18 45 45 H 0.96998 * 120.00558 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0392 -0.7212 1.2501 5 6 1.4996 -2.1548 1.2639 6 7 1.8632 -2.8092 -0.0004 7 6 2.5169 -3.9878 -0.0005 8 8 2.7504 -4.5532 -1.0510 9 6 2.9494 -4.5925 1.2760 10 6 2.0394 -4.7411 2.3248 11 6 2.4457 -5.3111 3.5124 12 6 3.7585 -5.7262 3.6720 13 9 4.1525 -6.2791 4.8400 14 6 4.6698 -5.5763 2.6353 15 9 5.9479 -5.9831 2.7963 16 6 4.2712 -5.0119 1.4401 17 6 1.5003 -2.1544 -1.2647 18 6 2.0399 -0.7207 -1.2501 19 1 3.1296 -0.7422 -1.2386 20 6 1.5568 0.0195 -2.4990 21 7 2.1411 -0.6007 -3.6907 22 6 1.8495 -0.1049 -4.9334 23 1 1.1890 0.7436 -5.0349 24 6 2.4027 -0.6927 -6.0626 25 7 3.2072 -1.7271 -5.9390 26 14 1.9988 -0.0212 -7.7583 27 1 1.0722 1.1317 -7.6263 28 1 3.2490 0.4219 -8.4260 29 1 1.3535 -1.0837 -8.5708 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8904 32 1 -0.3633 0.5144 -0.8896 33 1 1.6946 -0.1942 2.1399 34 1 3.1290 -0.7426 1.2392 35 1 0.4146 -2.1359 1.3666 36 1 1.9383 -2.7024 2.0980 37 1 1.0174 -4.4134 2.2042 38 1 1.7407 -5.4307 4.3216 39 1 4.9802 -4.8948 0.6338 40 1 0.4154 -2.1354 -1.3681 41 1 1.9394 -2.7016 -2.0988 42 1 1.8651 1.0636 -2.4445 43 1 0.4698 -0.0359 -2.5565 44 1 2.7340 -1.3629 -3.5996 45 1 3.5941 -2.1377 -6.7281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132893251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:11 Heat of formation + Delta-G solvation = -83.958993 kcal Electronic energy + Delta-G solvation = -29571.524856 eV Core-core repulsion = 25225.312730 eV Total energy + Delta-G solvation = -4346.212125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.85184 -48.91911 -40.87286 -39.05237 -37.79389 -35.02878 -33.63132 -31.98280 -31.52966 -31.05848 -29.75524 -27.71478 -25.90906 -25.08706 -23.77706 -23.40047 -23.12809 -21.24850 -20.37455 -18.68503 -18.14412 -17.88583 -17.51997 -17.00867 -16.73601 -16.32561 -16.06923 -15.32367 -15.21582 -15.11112 -14.97769 -14.84912 -14.51052 -14.34430 -14.06998 -13.61935 -13.57493 -13.14642 -13.07207 -12.92968 -12.78996 -12.56263 -12.37212 -11.92996 -11.81834 -11.67452 -11.28448 -11.11807 -10.92648 -10.81955 -10.69158 -10.31314 -10.24006 -10.02362 -9.85038 -9.61278 -9.57972 -9.11168 -8.85477 -8.56343 -6.88925 -5.71958 -3.01802 0.21821 0.51476 2.40585 2.73970 3.08392 3.32648 3.45678 3.50673 3.53483 3.89934 4.07342 4.12800 4.41843 4.57611 4.60147 4.66383 4.78815 4.83531 5.08986 5.13926 5.20218 5.27360 5.30680 5.36674 5.40973 5.50428 5.57735 5.62578 5.64787 5.67297 5.77073 5.84028 5.90605 5.98236 6.10442 6.20658 6.27964 6.30754 6.31880 6.50950 6.57477 6.74814 6.86466 7.33229 7.73105 8.06718 8.45728 9.56875 10.14462 10.48381 11.50372 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002759 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.608989 B =10145.447195 C =11380.089439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.094 3.906 6 N -0.600 5.600 7 C 0.554 3.446 8 O -0.514 6.514 9 C -0.097 4.097 10 C -0.074 4.074 11 C -0.129 4.129 12 C 0.082 3.918 13 F -0.126 7.126 14 C 0.068 3.932 15 F -0.124 7.124 16 C -0.078 4.078 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 -3.708 25.058 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.029 4.029 6 N -0.333 5.333 7 C 0.340 3.660 8 O -0.389 6.389 9 C -0.101 4.101 10 C -0.093 4.093 11 C -0.148 4.148 12 C 0.061 3.939 13 F -0.104 7.104 14 C 0.048 3.952 15 F -0.102 7.102 16 C -0.098 4.098 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.695 -3.949 24.387 24.979 hybrid contribution 0.400 -0.040 -0.643 0.758 sum -3.295 -3.989 23.744 24.301 Atomic orbital electron populations 1.21992 0.95183 1.01953 1.01888 1.21081 0.96046 0.99474 0.93842 0.90732 1.21947 1.01273 0.94921 0.98589 1.22104 1.00511 0.94111 0.86159 1.48092 1.56550 1.20402 1.08211 1.18082 0.78445 0.81312 0.88141 1.90912 1.54976 1.60987 1.32065 1.19892 0.93870 1.01263 0.95056 1.21282 1.00325 0.96726 0.90947 1.21011 0.93706 1.00343 0.99696 1.17884 0.93522 1.00355 0.82094 1.91549 1.91282 1.82761 1.44812 1.17482 0.79820 1.03192 0.94732 1.91563 1.34618 1.88222 1.95829 1.21118 0.96431 0.96184 0.96020 1.21827 1.00202 0.92974 0.85120 1.21699 1.00949 0.94263 0.95291 0.90761 1.20677 0.96002 0.94748 0.85299 1.42429 1.56924 1.37641 1.00832 1.19231 1.23272 1.10996 0.83747 0.91196 1.24754 1.00023 0.98310 0.97824 1.69677 1.35482 1.24143 1.28434 0.86146 0.77404 0.77935 0.84850 1.20610 1.21916 1.21874 0.92466 0.93107 0.91718 0.90746 0.91440 0.90673 0.89500 0.83354 0.82928 0.82619 0.90994 0.87740 0.96125 0.95896 0.78144 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.11 37.16 0.30 -1.24 16 2 C -0.09 -0.95 2.71 -90.58 -0.25 -1.20 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.14 5.62 -26.61 -0.15 -1.29 16 5 C 0.09 0.80 4.91 -3.71 -0.02 0.78 16 6 N -0.60 -7.58 2.97 -173.92 -0.52 -8.09 16 7 C 0.55 7.89 7.23 -12.38 -0.09 7.80 16 8 O -0.51 -9.88 16.47 5.31 0.09 -9.79 16 9 C -0.10 -1.04 5.00 -104.97 -0.53 -1.56 16 10 C -0.07 -0.55 7.36 -39.20 -0.29 -0.84 16 11 C -0.13 -0.85 10.01 -39.59 -0.40 -1.25 16 12 C 0.08 0.74 7.31 -39.22 -0.29 0.45 16 13 F -0.13 -1.23 17.17 2.25 0.04 -1.19 16 14 C 0.07 0.70 7.30 -39.42 -0.29 0.41 16 15 F -0.12 -1.42 17.17 2.25 0.04 -1.38 16 16 C -0.08 -0.84 9.71 -39.13 -0.38 -1.22 16 17 C 0.12 1.87 5.04 -3.71 -0.02 1.85 16 18 C -0.10 -1.56 2.15 -90.50 -0.19 -1.76 16 19 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.16 3.09 5.19 -4.04 -0.02 3.07 16 21 N -0.73 -18.49 5.38 -59.91 -0.32 -18.81 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 26 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H 0.06 0.57 4.98 -51.93 -0.26 0.31 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.53 6.69 -51.93 -0.35 0.19 16 36 H 0.09 0.59 4.55 -51.93 -0.24 0.35 16 37 H 0.15 0.78 7.07 -52.49 -0.37 0.41 16 38 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.07 1.08 6.70 -51.93 -0.35 0.73 16 41 H 0.10 2.09 6.23 -51.93 -0.32 1.77 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 44 H 0.38 10.39 6.90 -40.82 -0.28 10.11 16 45 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -33.51 363.77 -8.12 -41.64 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.79 Total: 5.87 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.85 Total: -3.38 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.11 Total: -54.87 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.51 -8.12 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.323 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds