Wall clock time and date at job start Tue Mar 31 2020 22:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.44383 * 2 1 4 4 C 1.53037 * 109.43310 * 119.98058 * 2 1 3 5 5 C 1.53193 * 109.34019 * 58.68836 * 4 2 1 6 6 N 1.46928 * 108.77424 * 54.61867 * 5 4 2 7 7 C 1.34776 * 120.63240 * 126.41406 * 6 5 4 8 8 O 1.21560 * 119.99772 * 176.15871 * 7 6 5 9 9 C 1.47726 * 119.99655 * 356.16109 * 7 6 5 10 10 C 1.39651 * 120.11212 * 50.76101 * 9 7 6 11 11 C 1.37850 * 119.92597 * 179.72415 * 10 9 7 12 12 C 1.38613 * 120.14776 * 0.57730 * 11 10 9 13 13 F 1.35095 * 119.89170 * 179.72529 * 12 11 10 14 14 C 1.38844 * 120.21825 * 359.69412 * 12 11 10 15 15 F 1.35093 * 119.96256 * 180.02562 * 14 12 11 16 16 C 1.38058 * 120.07189 * 0.02562 * 14 12 11 17 17 C 1.46931 * 118.73827 * 306.39167 * 6 5 4 18 18 C 1.53035 * 109.45949 * 240.03713 * 2 1 3 19 19 H 1.09002 * 109.49679 * 181.35849 * 18 2 1 20 20 C 1.53001 * 109.49897 * 61.29247 * 18 2 1 21 21 N 1.46504 * 109.46864 * 175.06241 * 20 18 2 22 22 C 1.36937 * 120.00062 * 179.97438 * 21 20 18 23 23 H 1.08007 * 119.99454 * 0.02562 * 22 21 20 24 24 C 1.38803 * 120.00344 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00212 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00245 * 179.72819 * 24 22 21 27 27 H 1.48501 * 109.47256 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47664 * 120.00111 * 26 24 22 29 29 H 1.48507 * 109.47234 * 240.00159 * 26 24 22 30 30 H 1.08993 * 109.47058 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46958 * 299.96390 * 1 2 3 32 32 H 1.08998 * 109.47035 * 59.96141 * 1 2 3 33 33 H 1.09004 * 109.49917 * 298.71999 * 4 2 1 34 34 H 1.09002 * 109.49594 * 178.65900 * 4 2 1 35 35 H 1.09000 * 109.58593 * 294.83529 * 5 4 2 36 36 H 1.08995 * 109.58657 * 174.40444 * 5 4 2 37 37 H 1.07998 * 120.03229 * 359.97438 * 10 9 7 38 38 H 1.07992 * 119.92890 * 180.31897 * 11 10 9 39 39 H 1.08001 * 120.07248 * 179.97438 * 16 14 12 40 40 H 1.08997 * 109.58636 * 293.82044 * 17 6 5 41 41 H 1.08999 * 109.58490 * 173.39615 * 17 6 5 42 42 H 1.08999 * 109.46875 * 55.06707 * 20 18 2 43 43 H 1.08992 * 109.47199 * 295.06118 * 20 18 2 44 44 H 0.96998 * 120.00196 * 0.02562 * 21 20 18 45 45 H 0.96998 * 120.00558 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0392 -0.7212 1.2501 5 6 1.4996 -2.1548 1.2639 6 7 1.8632 -2.8092 -0.0004 7 6 2.5169 -3.9878 -0.0005 8 8 2.7504 -4.5532 -1.0510 9 6 2.9494 -4.5925 1.2760 10 6 2.0394 -4.7411 2.3248 11 6 2.4457 -5.3111 3.5124 12 6 3.7585 -5.7262 3.6720 13 9 4.1525 -6.2791 4.8400 14 6 4.6698 -5.5763 2.6353 15 9 5.9479 -5.9831 2.7963 16 6 4.2712 -5.0119 1.4401 17 6 1.5003 -2.1544 -1.2647 18 6 2.0399 -0.7207 -1.2501 19 1 3.1296 -0.7422 -1.2386 20 6 1.5568 0.0195 -2.4990 21 7 2.1411 -0.6007 -3.6907 22 6 1.8495 -0.1049 -4.9334 23 1 1.1890 0.7436 -5.0349 24 6 2.4027 -0.6927 -6.0626 25 7 3.2072 -1.7271 -5.9390 26 14 1.9988 -0.0212 -7.7583 27 1 1.0722 1.1317 -7.6263 28 1 3.2490 0.4219 -8.4260 29 1 1.3535 -1.0837 -8.5708 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8904 32 1 -0.3633 0.5144 -0.8896 33 1 1.6946 -0.1942 2.1399 34 1 3.1290 -0.7426 1.2392 35 1 0.4146 -2.1359 1.3666 36 1 1.9383 -2.7024 2.0980 37 1 1.0174 -4.4134 2.2042 38 1 1.7407 -5.4307 4.3216 39 1 4.9802 -4.8948 0.6338 40 1 0.4154 -2.1354 -1.3681 41 1 1.9394 -2.7016 -2.0988 42 1 1.8651 1.0636 -2.4445 43 1 0.4698 -0.0359 -2.5565 44 1 2.7340 -1.3629 -3.5996 45 1 3.5941 -2.1377 -6.7281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132893251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:10 Heat of formation + Delta-G solvation = -105.176432 kcal Electronic energy + Delta-G solvation = -29572.444913 eV Core-core repulsion = 25225.312730 eV Total energy + Delta-G solvation = -4347.132183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.62962 -49.70660 -41.87763 -39.96633 -38.87372 -36.65838 -34.97277 -33.49921 -32.29485 -32.09385 -31.15172 -28.70291 -27.37760 -26.15467 -24.98803 -24.47833 -24.14537 -22.56564 -21.41557 -19.81016 -19.04189 -18.82349 -18.79208 -18.30566 -17.56547 -17.30229 -17.04223 -16.78491 -16.25573 -16.11345 -16.10116 -15.69666 -15.64565 -15.40266 -15.14885 -15.07553 -14.61751 -14.55448 -14.23530 -14.01790 -13.83230 -13.63020 -13.37817 -13.05033 -12.88713 -12.79190 -12.66266 -12.48856 -12.41508 -12.10532 -11.98299 -11.90551 -11.71601 -11.40347 -11.22037 -11.00171 -10.93867 -10.28640 -9.89272 -9.62648 -9.00335 -7.94885 -5.25046 -0.54159 -0.17802 1.39546 1.45160 1.46918 1.56977 1.78623 2.23968 2.55090 2.60567 3.15474 3.23059 3.38481 3.45228 3.68231 3.78662 3.81701 3.87040 3.89636 4.09104 4.17580 4.29983 4.39625 4.51461 4.54397 4.56955 4.59551 4.71162 4.73532 4.78458 4.79735 4.85842 4.93885 4.97933 5.02596 5.12481 5.20861 5.27992 5.33547 5.42536 5.47004 5.49797 5.52549 5.64606 6.25974 6.30332 6.98576 7.31501 8.08548 8.29884 9.28770 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.002759 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.608989 B =10145.447195 C =11380.089439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.086 3.914 6 N -0.593 5.593 7 C 0.549 3.451 8 O -0.581 6.581 9 C -0.108 4.108 10 C -0.055 4.055 11 C -0.103 4.103 12 C 0.083 3.917 13 F -0.129 7.129 14 C 0.053 3.947 15 F -0.137 7.137 16 C -0.091 4.091 17 C 0.129 3.871 18 C -0.091 4.091 19 H 0.047 0.953 20 C 0.159 3.841 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.261 1.261 28 H -0.294 1.294 29 H -0.295 1.295 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.182 0.818 38 H 0.197 0.803 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -2.405 28.691 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.162 4.162 5 C -0.034 4.034 6 N -0.324 5.324 7 C 0.338 3.662 8 O -0.461 6.461 9 C -0.112 4.112 10 C -0.073 4.073 11 C -0.121 4.121 12 C 0.063 3.937 13 F -0.107 7.107 14 C 0.033 3.967 15 F -0.116 7.116 16 C -0.110 4.110 17 C 0.006 3.994 18 C -0.111 4.111 19 H 0.066 0.934 20 C 0.033 3.967 21 N -0.392 5.392 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.222 1.222 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.214 0.786 39 H 0.155 0.845 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.571 -2.579 28.096 28.969 hybrid contribution 1.258 -0.405 -1.682 2.139 sum -5.314 -2.984 26.413 27.107 Atomic orbital electron populations 1.21968 0.93676 1.02388 1.02609 1.21073 0.97177 0.99219 0.92436 0.90441 1.21959 1.00630 0.95048 0.98598 1.22546 1.02568 0.93832 0.84441 1.48147 1.55632 1.19844 1.08759 1.18681 0.77541 0.81321 0.88664 1.90878 1.57514 1.62952 1.34768 1.19617 0.94426 1.02697 0.94413 1.21592 1.00821 0.95281 0.89646 1.21406 0.92873 0.97653 1.00137 1.18095 0.94180 1.00077 0.81374 1.91548 1.91482 1.82828 1.44844 1.17576 0.79782 1.04147 0.95220 1.91524 1.35629 1.88505 1.95899 1.20966 0.96686 0.97319 0.96056 1.21455 1.00091 0.92564 0.85271 1.21558 0.99294 0.94267 0.95947 0.93402 1.20878 0.96121 0.94759 0.84957 1.42708 1.56950 1.37436 1.02071 1.19695 1.22186 1.10537 0.84969 0.90237 1.25645 1.00646 0.99035 1.01914 1.69869 1.37379 1.26044 1.29031 0.85043 0.77166 0.77591 0.79778 1.18541 1.22162 1.22209 0.92126 0.89932 0.93500 0.86759 0.92674 0.87649 0.86951 0.80036 0.78622 0.84550 0.90035 0.93250 0.95971 0.94886 0.79861 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.11 71.98 0.58 -1.89 16 2 C -0.08 -1.60 2.71 -10.77 -0.03 -1.63 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.12 -1.73 5.62 30.67 0.17 -1.56 16 5 C 0.09 1.13 4.91 86.36 0.42 1.56 16 6 N -0.59 -14.69 2.97 -822.44 -2.44 -17.14 16 7 C 0.55 16.20 7.23 86.75 0.63 16.83 16 8 O -0.58 -24.42 16.47 -3.91 -0.06 -24.48 16 9 C -0.11 -2.22 5.00 -20.09 -0.10 -2.32 16 10 C -0.06 -0.59 7.36 22.52 0.17 -0.42 16 11 C -0.10 -0.86 10.01 22.27 0.22 -0.64 16 12 C 0.08 1.28 7.31 22.50 0.16 1.45 16 13 F -0.13 -2.18 17.17 44.97 0.77 -1.41 16 14 C 0.05 1.08 7.30 22.37 0.16 1.24 16 15 F -0.14 -3.25 17.17 44.97 0.77 -2.48 16 16 C -0.09 -2.04 9.71 22.57 0.22 -1.82 16 17 C 0.13 4.18 5.04 86.36 0.44 4.61 16 18 C -0.09 -2.83 2.15 -10.72 -0.02 -2.86 16 19 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 20 C 0.16 6.25 5.19 86.38 0.45 6.69 16 21 N -0.75 -39.47 5.38 -343.45 -1.85 -41.31 16 22 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 23 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 24 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 25 N -0.97 -62.89 13.06 21.65 0.28 -62.61 16 26 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 27 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 30 H 0.06 0.97 4.98 -2.39 -0.01 0.95 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.05 0.95 6.57 -2.39 -0.02 0.94 16 33 H 0.11 0.82 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 0.86 6.69 -2.39 -0.02 0.85 16 36 H 0.11 0.95 4.55 -2.39 -0.01 0.94 16 37 H 0.18 0.80 7.07 -2.91 -0.02 0.78 16 38 H 0.20 0.10 8.06 -2.91 -0.02 0.07 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.08 2.44 6.70 -2.39 -0.02 2.43 16 41 H 0.05 2.17 6.23 -2.39 -0.01 2.16 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.03 1.25 6.73 -2.39 -0.02 1.24 16 44 H 0.37 21.47 6.90 -92.71 -0.64 20.83 16 45 H 0.25 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -80.58 363.77 4.68 -75.89 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.40 Total: 22.06 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.78 Total: 1.86 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -4.01 Total: -121.06 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 1.54 Total: -3.89 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -80.58 4.68 -75.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.282 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds