Wall clock time and date at job start Tue Mar 31 2020 22:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.45123 * 2 1 4 4 C 1.53041 * 109.46330 * 240.03009 * 2 1 3 5 5 C 1.53191 * 109.31194 * 301.34791 * 4 2 1 6 6 N 1.46921 * 108.77401 * 305.36012 * 5 4 2 7 7 C 1.34783 * 120.62843 * 233.60938 * 6 5 4 8 8 O 1.21570 * 119.99402 * 175.09084 * 7 6 5 9 9 C 1.47725 * 120.00233 * 355.09012 * 7 6 5 10 10 C 1.39648 * 120.11158 * 142.26534 * 9 7 6 11 11 C 1.37843 * 119.92858 * 179.97438 * 10 9 7 12 12 C 1.38611 * 120.14497 * 359.97438 * 11 10 9 13 13 F 1.35107 * 119.88879 * 179.97438 * 12 11 10 14 14 C 1.38829 * 120.22424 * 0.02562 * 12 11 10 15 15 F 1.35101 * 119.96615 * 180.02562 * 14 12 11 16 16 C 1.38065 * 120.06658 * 359.74605 * 14 12 11 17 17 C 1.46925 * 118.74025 * 53.61297 * 6 5 4 18 18 C 1.53046 * 109.46157 * 119.96377 * 2 1 3 19 19 H 1.09005 * 109.50097 * 178.60669 * 18 2 1 20 20 C 1.53000 * 109.52155 * 298.68872 * 18 2 1 21 21 N 1.46506 * 109.46850 * 184.85367 * 20 18 2 22 22 C 1.36929 * 119.99809 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00224 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00063 * 179.97438 * 22 21 20 25 25 N 1.31625 * 119.99798 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00231 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46751 * 60.00364 * 26 24 22 28 28 H 1.48498 * 109.46932 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.46976 * 300.00391 * 26 24 22 30 30 H 1.08998 * 109.47130 * 300.03711 * 1 2 3 31 31 H 1.08998 * 109.46926 * 60.03603 * 1 2 3 32 32 H 1.09001 * 109.47174 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.49264 * 61.29694 * 4 2 1 34 34 H 1.08995 * 109.50415 * 181.39263 * 4 2 1 35 35 H 1.08999 * 109.59021 * 65.15134 * 5 4 2 36 36 H 1.09001 * 109.58704 * 185.43014 * 5 4 2 37 37 H 1.07996 * 120.03354 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.92892 * 179.97438 * 11 10 9 39 39 H 1.08003 * 120.06905 * 180.25797 * 16 14 12 40 40 H 1.08997 * 109.58544 * 186.60739 * 17 6 5 41 41 H 1.08997 * 109.58658 * 66.17619 * 17 6 5 42 42 H 1.08997 * 109.47365 * 304.85013 * 20 18 2 43 43 H 1.09001 * 109.47129 * 64.85779 * 20 18 2 44 44 H 0.96997 * 119.99898 * 0.02562 * 21 20 18 45 45 H 0.96996 * 119.99739 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 1.4996 -2.1542 -1.2641 6 7 1.8625 -2.8088 0.0001 7 6 2.5160 -3.9876 0.0001 8 8 2.8896 -4.4754 1.0491 9 6 2.7784 -4.6868 -1.2745 10 6 3.9840 -5.3650 -1.4663 11 6 4.2246 -6.0165 -2.6570 12 6 3.2724 -6.0005 -3.6641 13 9 3.5139 -6.6404 -4.8292 14 6 2.0718 -5.3282 -3.4800 15 9 1.1471 -5.3164 -4.4649 16 6 1.8194 -4.6766 -2.2893 17 6 1.4995 -2.1541 1.2643 18 6 2.0399 -0.7207 1.2501 19 1 3.1296 -0.7428 1.2384 20 6 1.5575 0.0193 2.4994 21 7 2.1406 -0.6026 3.6909 22 6 1.8493 -0.1072 4.9338 23 1 1.1893 0.7416 5.0358 24 6 2.4013 -0.6967 6.0628 25 7 3.2052 -1.7316 5.9386 26 14 2.0045 -0.0206 7.7584 27 1 0.5401 -0.0992 7.9923 28 1 2.7135 -0.8210 8.7888 29 1 2.4438 1.3955 7.8418 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6958 -0.1935 -2.1398 34 1 3.1295 -0.7429 -1.2383 35 1 0.4146 -2.1348 -1.3673 36 1 1.9362 -2.7011 -2.0998 37 1 4.7270 -5.3789 -0.6827 38 1 5.1572 -6.5407 -2.8055 39 1 0.8836 -4.1571 -2.1445 40 1 1.9382 -2.7017 2.0985 41 1 0.4146 -2.1347 1.3674 42 1 1.8672 1.0629 2.4458 43 1 0.4703 -0.0347 2.5566 44 1 2.7330 -1.3652 3.5993 45 1 3.5912 -2.1432 6.7275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132893252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:13 Heat of formation + Delta-G solvation = -100.785883 kcal Electronic energy + Delta-G solvation = -29633.735645 eV Core-core repulsion = 25286.793851 eV Total energy + Delta-G solvation = -4346.941794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.61469 -49.68822 -41.91244 -39.97640 -38.85455 -36.67876 -35.04189 -33.50807 -32.52006 -31.74530 -31.23315 -28.73735 -27.36829 -26.22883 -25.03366 -24.48170 -24.09235 -22.58095 -21.42025 -19.84340 -19.03868 -18.86258 -18.78734 -18.20361 -17.57927 -17.34300 -16.98519 -16.76850 -16.24980 -16.21570 -16.07482 -15.72401 -15.61188 -15.33970 -15.27478 -15.01284 -14.57262 -14.51814 -14.30310 -14.04484 -13.80962 -13.64845 -13.33589 -13.03515 -12.84475 -12.83114 -12.65362 -12.49313 -12.43804 -12.16618 -12.03183 -11.89662 -11.72575 -11.41688 -11.22996 -11.02507 -10.91123 -10.19000 -9.97669 -9.62848 -8.99308 -7.93517 -5.23688 -0.59654 -0.18681 1.44459 1.45756 1.49705 1.55953 1.79577 2.26540 2.56164 2.58568 3.08938 3.23859 3.39206 3.44762 3.67316 3.76725 3.79422 3.85996 3.88493 4.06453 4.20148 4.25879 4.37859 4.41907 4.49444 4.52755 4.58076 4.68235 4.69166 4.77303 4.82580 4.84268 4.92049 4.95977 5.03391 5.11119 5.18212 5.27190 5.31518 5.40550 5.45356 5.49590 5.51009 5.61791 6.27048 6.29227 6.98582 7.32763 8.09766 8.31508 9.29684 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.002706 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.721236 B =10344.310002 C =11496.793648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.084 3.916 6 N -0.596 5.596 7 C 0.550 3.450 8 O -0.575 6.575 9 C -0.114 4.114 10 C -0.048 4.048 11 C -0.113 4.113 12 C 0.085 3.915 13 F -0.128 7.128 14 C 0.060 3.940 15 F -0.128 7.128 16 C -0.087 4.087 17 C 0.128 3.872 18 C -0.090 4.090 19 H 0.050 0.950 20 C 0.160 3.840 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.078 0.922 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.976 3.024 27 H -0.276 1.276 28 H -0.297 1.297 29 H -0.276 1.276 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.150 0.850 38 H 0.182 0.818 39 H 0.174 0.826 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.371 0.629 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -3.753 -26.801 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.161 4.161 5 C -0.036 4.036 6 N -0.327 5.327 7 C 0.339 3.661 8 O -0.456 6.456 9 C -0.117 4.117 10 C -0.067 4.067 11 C -0.132 4.132 12 C 0.065 3.935 13 F -0.107 7.107 14 C 0.040 3.960 15 F -0.106 7.106 16 C -0.106 4.106 17 C 0.006 3.994 18 C -0.110 4.110 19 H 0.069 0.931 20 C 0.033 3.967 21 N -0.391 5.391 22 C -0.378 4.378 23 H 0.096 0.904 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.202 1.202 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.168 0.832 38 H 0.199 0.801 39 H 0.191 0.809 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.050 0.950 44 H 0.202 0.798 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.143 -3.886 -26.233 26.705 hybrid contribution 0.212 -0.234 1.202 1.242 sum -2.932 -4.119 -25.032 25.537 Atomic orbital electron populations 1.21970 0.93881 1.02258 1.02612 1.21069 0.97018 0.99327 0.92465 0.90235 1.21956 1.00837 0.94682 0.98646 1.22593 1.02220 0.94151 0.84659 1.48123 1.55930 1.20100 1.08539 1.18647 0.77481 0.81306 0.88706 1.90875 1.52763 1.67386 1.34541 1.19642 0.96872 1.01878 0.93345 1.21284 0.95768 0.92487 0.97166 1.21255 1.00405 1.00625 0.90879 1.18073 0.94605 0.96860 0.84010 1.91553 1.94405 1.79188 1.45529 1.17456 0.87460 1.03241 0.87885 1.91555 1.64114 1.95055 1.59923 1.21405 1.01212 0.98273 0.89752 1.21468 0.99897 0.92778 0.85278 1.21545 0.99431 0.94216 0.95781 0.93127 1.20867 0.96058 0.94771 0.85003 1.42677 1.57048 1.37392 1.01975 1.19619 1.22492 1.10625 0.85020 0.90364 1.25641 1.00598 0.98975 1.01867 1.69858 1.37241 1.25890 1.29205 0.85182 0.77649 0.77466 0.79282 1.20205 1.22379 1.20171 0.93310 0.90101 0.92355 0.87018 0.92237 0.88263 0.87358 0.83236 0.80073 0.80896 0.92843 0.90234 0.95961 0.95043 0.79761 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.11 71.98 0.58 -2.10 16 2 C -0.08 -1.66 2.71 -10.77 -0.03 -1.69 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.89 5.63 30.67 0.17 -1.71 16 5 C 0.08 1.31 4.36 86.36 0.38 1.68 16 6 N -0.60 -15.34 2.97 -822.45 -2.44 -17.78 16 7 C 0.55 16.18 7.35 86.75 0.64 16.82 16 8 O -0.58 -23.48 16.30 -3.94 -0.06 -23.54 16 9 C -0.11 -2.34 5.23 -20.09 -0.11 -2.45 16 10 C -0.05 -0.85 9.62 22.52 0.22 -0.63 16 11 C -0.11 -1.49 10.01 22.27 0.22 -1.27 16 12 C 0.08 1.32 7.31 22.50 0.16 1.48 16 13 F -0.13 -2.19 17.18 44.97 0.77 -1.42 16 14 C 0.06 0.95 7.30 22.37 0.16 1.11 16 15 F -0.13 -2.20 17.18 44.97 0.77 -1.43 16 16 C -0.09 -1.35 7.32 22.56 0.17 -1.19 16 17 C 0.13 4.22 5.06 86.36 0.44 4.66 16 18 C -0.09 -2.84 2.15 -10.71 -0.02 -2.86 16 19 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 20 C 0.16 6.29 5.19 86.38 0.45 6.74 16 21 N -0.75 -39.38 5.38 -343.44 -1.85 -41.23 16 22 C -0.25 -14.10 9.99 84.04 0.84 -13.26 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 25 N -0.97 -62.40 13.06 21.65 0.28 -62.12 16 26 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 27 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 30 H 0.05 1.04 6.58 -2.39 -0.02 1.02 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.03 4.98 -2.39 -0.01 1.02 16 33 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.10 1.13 6.64 -2.39 -0.02 1.11 16 36 H 0.11 1.30 4.54 -2.39 -0.01 1.29 16 37 H 0.15 2.73 8.04 -2.91 -0.02 2.71 16 38 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.17 2.02 6.28 -2.91 -0.02 2.00 16 40 H 0.05 2.35 6.19 -2.39 -0.01 2.33 16 41 H 0.08 2.44 6.69 -2.39 -0.02 2.43 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.03 1.21 6.73 -2.39 -0.02 1.19 16 44 H 0.37 21.42 6.89 -92.71 -0.64 20.78 16 45 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -76.17 362.37 4.64 -71.52 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.41 Total: 25.47 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.74 Total: 1.12 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -4.01 Total: -121.13 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.06 Total: -23.54 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 1.54 Total: -2.84 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -76.17 4.64 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132893252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.261 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds