Wall clock time and date at job start Tue Mar 31 2020 22:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46146 * 2 1 4 4 C 1.53042 * 109.44878 * 240.03120 * 2 1 3 5 5 C 1.52759 * 109.38221 * 301.22880 * 4 2 1 6 6 N 1.46925 * 109.00895 * 305.58516 * 5 4 2 7 7 C 1.34773 * 120.63231 * 233.58437 * 6 5 4 8 8 O 1.21569 * 120.00003 * 183.87281 * 7 6 5 9 9 C 1.47693 * 120.00042 * 3.87731 * 7 6 5 10 10 C 1.39654 * 120.15602 * 305.93128 * 9 7 6 11 11 C 1.38063 * 119.85383 * 180.29978 * 10 9 7 12 12 F 1.35101 * 119.91720 * 179.71852 * 11 10 9 13 13 C 1.38660 * 120.16641 * 359.46724 * 11 10 9 14 14 C 1.38183 * 120.31308 * 0.51130 * 13 11 10 15 15 C 1.38318 * 120.14388 * 359.76902 * 14 13 11 16 16 F 1.35105 * 120.08454 * 180.02562 * 15 14 13 17 17 C 1.46928 * 118.73510 * 53.31259 * 6 5 4 18 18 C 1.53048 * 109.45935 * 119.97102 * 2 1 3 19 19 H 1.08995 * 109.49664 * 178.59280 * 18 2 1 20 20 C 1.52997 * 109.49574 * 298.69082 * 18 2 1 21 21 N 1.46499 * 109.46957 * 184.83683 * 20 18 2 22 22 C 1.36937 * 119.99962 * 179.97438 * 21 20 18 23 23 H 1.07996 * 120.00361 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00151 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46935 * 90.00494 * 26 24 22 28 28 H 1.48497 * 109.47252 * 210.00170 * 26 24 22 29 29 H 1.48501 * 109.46844 * 330.00263 * 26 24 22 30 30 H 1.09001 * 109.46907 * 300.03203 * 1 2 3 31 31 H 1.09002 * 109.47299 * 60.02625 * 1 2 3 32 32 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49532 * 61.30509 * 4 2 1 34 34 H 1.08997 * 109.49449 * 181.36841 * 4 2 1 35 35 H 1.09006 * 109.50512 * 185.70913 * 5 4 2 36 36 H 1.08989 * 109.43468 * 65.42389 * 5 4 2 37 37 H 1.08003 * 120.07410 * 0.02562 * 10 9 7 38 38 H 1.07994 * 119.84476 * 180.23969 * 13 11 10 39 39 H 1.07998 * 119.93224 * 179.74734 * 14 13 11 40 40 H 1.09000 * 109.58929 * 66.43322 * 17 6 5 41 41 H 1.09005 * 109.58185 * 186.85392 * 17 6 5 42 42 H 1.09004 * 109.46858 * 304.83505 * 20 18 2 43 43 H 1.09003 * 109.47121 * 64.83792 * 20 18 2 44 44 H 0.97001 * 119.99862 * 0.02562 * 21 20 18 45 45 H 0.97003 * 120.00486 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 1.5039 -2.1514 -1.2642 6 7 1.8619 -2.8089 -0.0001 7 6 2.5155 -3.9876 -0.0001 8 8 2.7440 -4.5560 1.0499 9 6 2.9544 -4.5886 -1.2759 10 6 2.0347 -4.7979 -2.3058 11 6 2.4505 -5.3659 -3.4935 12 9 1.5607 -5.5742 -4.4886 13 6 3.7799 -5.7182 -3.6696 14 6 4.6959 -5.5138 -2.6554 15 6 4.2923 -4.9510 -1.4580 16 9 5.1889 -4.7512 -0.4674 17 6 1.4992 -2.1541 1.2642 18 6 2.0399 -0.7209 1.2501 19 1 3.1295 -0.7432 1.2382 20 6 1.5571 0.0194 2.4990 21 7 2.1395 -0.6024 3.6908 22 6 1.8485 -0.1061 4.9335 23 1 1.1895 0.7433 5.0350 24 6 2.3999 -0.6956 6.0628 25 7 3.2028 -1.7312 5.9392 26 14 2.0025 -0.0191 7.7581 27 1 0.7979 -0.7026 8.2938 28 1 3.1519 -0.2565 8.6678 29 1 1.7417 1.4396 7.6602 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6955 -0.1935 -2.1398 34 1 3.1293 -0.7426 -1.2387 35 1 1.9457 -2.6973 -2.0979 36 1 0.4195 -2.1315 -1.3714 37 1 0.9996 -4.5202 -2.1719 38 1 4.1002 -6.1586 -4.6022 39 1 5.7290 -5.7943 -2.7976 40 1 0.4143 -2.1345 1.3675 41 1 1.9378 -2.7019 2.0983 42 1 1.8671 1.0630 2.4453 43 1 0.4699 -0.0343 2.5557 44 1 2.7318 -1.3652 3.5996 45 1 3.5879 -2.1434 6.7283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132894092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:16 Heat of formation + Delta-G solvation = -83.965300 kcal Electronic energy + Delta-G solvation = -29981.658650 eV Core-core repulsion = 25635.446252 eV Total energy + Delta-G solvation = -4346.212399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35380 -49.15843 -40.72721 -38.98947 -37.83233 -35.00781 -33.63059 -32.17423 -31.69756 -30.44226 -29.80287 -27.71170 -25.97203 -25.11568 -23.86701 -23.31779 -22.92495 -21.22683 -20.36188 -18.62902 -17.92573 -17.76756 -17.50300 -17.02699 -16.74935 -16.20580 -15.88023 -15.61013 -15.07720 -15.03321 -14.91785 -14.78071 -14.58147 -14.25548 -13.85331 -13.64415 -13.56658 -13.17852 -12.99159 -12.83412 -12.77449 -12.52644 -12.29558 -11.95037 -11.77925 -11.68282 -11.26238 -11.08282 -10.90608 -10.79129 -10.66620 -10.29601 -10.20999 -10.03823 -9.88768 -9.62867 -9.52612 -9.01009 -8.82313 -8.53086 -6.86148 -5.68849 -2.98842 0.28479 0.49628 2.44997 2.76876 3.03662 3.47848 3.52240 3.54649 3.68362 3.73813 4.01681 4.23718 4.40112 4.58303 4.61293 4.68239 4.81349 4.87124 5.06681 5.15021 5.22859 5.30173 5.34773 5.43185 5.47088 5.53578 5.56816 5.61212 5.65140 5.67425 5.79492 5.87065 5.93238 6.00778 6.13498 6.23760 6.30872 6.33387 6.34933 6.54050 6.60273 6.77617 6.89439 7.35074 7.75117 8.08992 8.48643 9.59588 10.17492 10.51487 11.53368 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.003053 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.425069 B = 9170.246219 C =10351.411820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.096 3.904 6 N -0.599 5.599 7 C 0.555 3.445 8 O -0.507 6.507 9 C -0.126 4.126 10 C -0.099 4.099 11 C 0.085 3.915 12 F -0.132 7.132 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.138 3.862 16 F -0.116 7.116 17 C 0.120 3.880 18 C -0.103 4.103 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 -4.713 -26.318 26.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.027 4.027 6 N -0.332 5.332 7 C 0.340 3.660 8 O -0.382 6.382 9 C -0.130 4.130 10 C -0.118 4.118 11 C 0.065 3.935 12 F -0.110 7.110 13 C -0.127 4.127 14 C -0.147 4.147 15 C 0.118 3.882 16 F -0.094 7.094 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.619 -4.917 -25.581 26.100 hybrid contribution 0.030 0.137 0.876 0.887 sum -1.589 -4.780 -24.705 25.213 Atomic orbital electron populations 1.21990 0.95164 1.01966 1.01891 1.21083 0.96055 0.99467 0.93807 0.90691 1.21871 1.01280 0.94913 0.98667 1.21939 1.00586 0.94091 0.86039 1.48076 1.56589 1.20273 1.08245 1.17925 0.78652 0.81520 0.87859 1.90920 1.54658 1.60808 1.31811 1.19914 0.93004 1.04064 0.96037 1.21152 1.00905 0.98933 0.90841 1.17443 0.87466 1.02316 0.86252 1.91545 1.67329 1.92881 1.59292 1.21135 0.91002 1.00081 1.00477 1.21003 1.01696 1.00640 0.91326 1.17656 0.85805 0.98458 0.86298 1.91628 1.65965 1.92184 1.59588 1.21832 1.00191 0.93002 0.85069 1.21702 1.00968 0.94239 0.95312 0.90749 1.20673 0.96001 0.94722 0.85287 1.42426 1.57043 1.37543 1.00806 1.19187 1.23447 1.10950 0.83761 0.91251 1.24760 1.00025 0.98297 0.97810 1.69674 1.35476 1.24033 1.28516 0.86212 0.77266 0.78166 0.84660 1.21743 1.21808 1.20831 0.91688 0.93091 0.92477 0.90676 0.91488 0.89859 0.90684 0.83059 0.83219 0.82872 0.90953 0.87740 0.96118 0.95897 0.78119 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.11 37.16 0.30 -1.35 16 2 C -0.09 -1.02 2.71 -90.57 -0.25 -1.26 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.26 5.61 -26.83 -0.15 -1.42 16 5 C 0.10 0.95 5.03 -3.93 -0.02 0.93 16 6 N -0.60 -8.40 2.98 -174.20 -0.52 -8.92 16 7 C 0.55 8.83 6.92 -12.40 -0.09 8.74 16 8 O -0.51 -10.60 16.29 5.30 0.09 -10.51 16 9 C -0.13 -1.53 4.89 -104.92 -0.51 -2.04 16 10 C -0.10 -0.90 7.40 -39.12 -0.29 -1.19 16 11 C 0.08 0.68 7.29 -39.49 -0.29 0.39 16 12 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 13 C -0.11 -0.71 10.01 -39.45 -0.39 -1.11 16 14 C -0.13 -0.99 10.01 -39.57 -0.40 -1.39 16 15 C 0.14 1.62 7.27 -38.97 -0.28 1.33 16 16 F -0.12 -1.70 16.65 2.25 0.04 -1.66 16 17 C 0.12 2.00 5.04 -3.71 -0.02 1.99 16 18 C -0.10 -1.66 2.15 -90.50 -0.19 -1.85 16 19 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.20 5.19 -4.04 -0.02 3.18 16 21 N -0.73 -18.96 5.38 -59.91 -0.32 -19.28 16 22 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.16 13.06 55.49 0.72 -28.43 16 26 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.61 4.99 -51.93 -0.26 0.36 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.69 4.74 -51.93 -0.25 0.45 16 36 H 0.08 0.63 6.70 -51.94 -0.35 0.29 16 37 H 0.15 1.16 7.37 -52.48 -0.39 0.78 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 41 H 0.10 2.21 6.23 -51.93 -0.32 1.89 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.45 6.72 -51.93 -0.35 0.10 16 44 H 0.38 10.70 6.89 -40.82 -0.28 10.41 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -34.56 363.62 -8.15 -42.71 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.81 Total: 6.33 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -2.85 Total: -2.58 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.12 Total: -56.63 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.56 -8.15 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.257 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds