Wall clock time and date at job start Tue Mar 31 2020 22:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46146 * 2 1 4 4 C 1.53042 * 109.44878 * 240.03120 * 2 1 3 5 5 C 1.52759 * 109.38221 * 301.22880 * 4 2 1 6 6 N 1.46925 * 109.00895 * 305.58516 * 5 4 2 7 7 C 1.34773 * 120.63231 * 233.58437 * 6 5 4 8 8 O 1.21569 * 120.00003 * 183.87281 * 7 6 5 9 9 C 1.47693 * 120.00042 * 3.87731 * 7 6 5 10 10 C 1.39654 * 120.15602 * 305.93128 * 9 7 6 11 11 C 1.38063 * 119.85383 * 180.29978 * 10 9 7 12 12 F 1.35101 * 119.91720 * 179.71852 * 11 10 9 13 13 C 1.38660 * 120.16641 * 359.46724 * 11 10 9 14 14 C 1.38183 * 120.31308 * 0.51130 * 13 11 10 15 15 C 1.38318 * 120.14388 * 359.76902 * 14 13 11 16 16 F 1.35105 * 120.08454 * 180.02562 * 15 14 13 17 17 C 1.46928 * 118.73510 * 53.31259 * 6 5 4 18 18 C 1.53048 * 109.45935 * 119.97102 * 2 1 3 19 19 H 1.08995 * 109.49664 * 178.59280 * 18 2 1 20 20 C 1.52997 * 109.49574 * 298.69082 * 18 2 1 21 21 N 1.46499 * 109.46957 * 184.83683 * 20 18 2 22 22 C 1.36937 * 119.99962 * 179.97438 * 21 20 18 23 23 H 1.07996 * 120.00361 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00151 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99740 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46935 * 90.00494 * 26 24 22 28 28 H 1.48497 * 109.47252 * 210.00170 * 26 24 22 29 29 H 1.48501 * 109.46844 * 330.00263 * 26 24 22 30 30 H 1.09001 * 109.46907 * 300.03203 * 1 2 3 31 31 H 1.09002 * 109.47299 * 60.02625 * 1 2 3 32 32 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49532 * 61.30509 * 4 2 1 34 34 H 1.08997 * 109.49449 * 181.36841 * 4 2 1 35 35 H 1.09006 * 109.50512 * 185.70913 * 5 4 2 36 36 H 1.08989 * 109.43468 * 65.42389 * 5 4 2 37 37 H 1.08003 * 120.07410 * 0.02562 * 10 9 7 38 38 H 1.07994 * 119.84476 * 180.23969 * 13 11 10 39 39 H 1.07998 * 119.93224 * 179.74734 * 14 13 11 40 40 H 1.09000 * 109.58929 * 66.43322 * 17 6 5 41 41 H 1.09005 * 109.58185 * 186.85392 * 17 6 5 42 42 H 1.09004 * 109.46858 * 304.83505 * 20 18 2 43 43 H 1.09003 * 109.47121 * 64.83792 * 20 18 2 44 44 H 0.97001 * 119.99862 * 0.02562 * 21 20 18 45 45 H 0.97003 * 120.00486 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 1.5039 -2.1514 -1.2642 6 7 1.8619 -2.8089 -0.0001 7 6 2.5155 -3.9876 -0.0001 8 8 2.7440 -4.5560 1.0499 9 6 2.9544 -4.5886 -1.2759 10 6 2.0347 -4.7979 -2.3058 11 6 2.4505 -5.3659 -3.4935 12 9 1.5607 -5.5742 -4.4886 13 6 3.7799 -5.7182 -3.6696 14 6 4.6959 -5.5138 -2.6554 15 6 4.2923 -4.9510 -1.4580 16 9 5.1889 -4.7512 -0.4674 17 6 1.4992 -2.1541 1.2642 18 6 2.0399 -0.7209 1.2501 19 1 3.1295 -0.7432 1.2382 20 6 1.5571 0.0194 2.4990 21 7 2.1395 -0.6024 3.6908 22 6 1.8485 -0.1061 4.9335 23 1 1.1895 0.7433 5.0350 24 6 2.3999 -0.6956 6.0628 25 7 3.2028 -1.7312 5.9392 26 14 2.0025 -0.0191 7.7581 27 1 0.7979 -0.7026 8.2938 28 1 3.1519 -0.2565 8.6678 29 1 1.7417 1.4396 7.6602 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6955 -0.1935 -2.1398 34 1 3.1293 -0.7426 -1.2387 35 1 1.9457 -2.6973 -2.0979 36 1 0.4195 -2.1315 -1.3714 37 1 0.9996 -4.5202 -2.1719 38 1 4.1002 -6.1586 -4.6022 39 1 5.7290 -5.7943 -2.7976 40 1 0.4143 -2.1345 1.3675 41 1 1.9378 -2.7019 2.0983 42 1 1.8671 1.0630 2.4453 43 1 0.4699 -0.0343 2.5557 44 1 2.7318 -1.3652 3.5996 45 1 3.5879 -2.1434 6.7283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132894092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:16 Heat of formation + Delta-G solvation = -106.397251 kcal Electronic energy + Delta-G solvation = -29982.631373 eV Core-core repulsion = 25635.446252 eV Total energy + Delta-G solvation = -4347.185121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.13124 -49.99129 -41.83556 -39.91406 -38.97417 -36.69544 -35.04662 -33.55238 -32.83534 -31.41331 -31.17007 -28.77421 -27.47730 -26.26777 -24.99566 -24.70493 -23.83773 -22.62046 -21.45815 -19.83049 -19.00721 -18.77121 -18.64224 -18.33691 -17.77593 -17.11307 -16.88708 -16.76600 -16.46014 -16.16737 -16.12342 -15.75890 -15.48329 -15.39426 -15.31767 -14.99163 -14.58990 -14.51522 -14.27862 -14.04963 -13.83053 -13.70121 -13.27017 -13.07158 -12.86679 -12.81029 -12.67003 -12.56154 -12.49683 -12.14714 -12.04953 -11.91950 -11.77667 -11.45218 -11.26994 -11.08904 -10.94682 -10.34382 -9.80120 -9.67759 -9.02377 -7.95648 -5.26551 -0.47055 -0.19043 1.33814 1.43787 1.47151 1.55561 1.75343 2.20034 2.54212 2.93908 2.97165 3.22645 3.37170 3.51802 3.65175 3.75160 3.79484 3.81783 3.93865 4.03371 4.14819 4.22459 4.34149 4.42367 4.47440 4.54401 4.64588 4.69978 4.74215 4.77451 4.80312 4.82906 4.88619 4.91467 4.96984 5.08195 5.14711 5.23361 5.27912 5.36379 5.42283 5.47273 5.57451 5.59323 6.20802 6.24598 6.89975 7.29765 8.06263 8.28269 9.27882 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.003053 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.425069 B = 9170.246219 C =10351.411820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.090 3.910 6 N -0.593 5.593 7 C 0.547 3.453 8 O -0.577 6.577 9 C -0.144 4.144 10 C -0.093 4.093 11 C 0.092 3.908 12 F -0.128 7.128 13 C -0.085 4.085 14 C -0.113 4.113 15 C 0.106 3.894 16 F -0.145 7.145 17 C 0.129 3.871 18 C -0.091 4.091 19 H 0.047 0.953 20 C 0.160 3.840 21 N -0.750 5.750 22 C -0.245 4.245 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.297 1.297 29 H -0.265 1.265 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.181 0.819 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.025 0.975 43 H 0.033 0.967 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 -3.811 -30.380 30.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.161 4.161 5 C -0.031 4.031 6 N -0.324 5.324 7 C 0.335 3.665 8 O -0.457 6.457 9 C -0.149 4.149 10 C -0.113 4.113 11 C 0.073 3.927 12 F -0.107 7.107 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.086 3.914 16 F -0.123 7.123 17 C 0.006 3.994 18 C -0.110 4.110 19 H 0.065 0.935 20 C 0.034 3.966 21 N -0.392 5.392 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.189 1.189 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.183 0.817 38 H 0.207 0.793 39 H 0.199 0.801 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.047 -3.946 -29.723 30.138 hybrid contribution 0.418 -0.143 1.988 2.037 sum -2.629 -4.090 -27.735 28.158 Atomic orbital electron populations 1.21965 0.93677 1.02220 1.02768 1.21077 0.97175 0.99346 0.92226 0.89987 1.21881 1.00655 0.94702 0.98879 1.22339 1.02356 0.94088 0.84308 1.48155 1.55663 1.19794 1.08835 1.18633 0.77703 0.81538 0.88613 1.90872 1.57340 1.62826 1.34640 1.19608 0.94000 1.06206 0.95049 1.21180 1.00875 0.98769 0.90437 1.17463 0.88044 1.01555 0.85645 1.91567 1.67394 1.92745 1.58949 1.21553 0.89842 0.97794 1.01174 1.21286 1.03368 0.98863 0.89585 1.18171 0.85470 1.00488 0.87279 1.91551 1.66867 1.92741 1.61187 1.21474 1.00044 0.92785 0.85091 1.21558 0.99237 0.94065 0.96168 0.93476 1.20869 0.96131 0.94793 0.84828 1.42708 1.57072 1.37331 1.02105 1.19675 1.22472 1.10606 0.84932 0.90154 1.25686 1.00559 0.98978 1.02053 1.69879 1.37385 1.25967 1.29146 0.85076 0.76627 0.78301 0.79369 1.21329 1.22367 1.18911 0.93215 0.89835 0.92506 0.86581 0.92633 0.87719 0.88126 0.81699 0.79281 0.80121 0.90080 0.93344 0.95714 0.94869 0.79957 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.11 71.98 0.58 -2.21 16 2 C -0.08 -1.75 2.71 -10.76 -0.03 -1.78 16 3 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 4 C -0.12 -2.06 5.61 30.53 0.17 -1.89 16 5 C 0.09 1.57 5.03 86.22 0.43 2.00 16 6 N -0.59 -17.23 2.98 -823.33 -2.45 -19.68 16 7 C 0.55 18.68 6.92 86.74 0.60 19.28 16 8 O -0.58 -26.83 16.29 -3.93 -0.06 -26.89 16 9 C -0.14 -3.53 4.89 -20.06 -0.10 -3.63 16 10 C -0.09 -1.51 7.40 22.57 0.17 -1.34 16 11 C 0.09 1.14 7.29 22.33 0.16 1.30 16 12 F -0.13 -1.58 17.26 44.97 0.78 -0.81 16 13 C -0.09 -0.75 10.01 22.36 0.22 -0.53 16 14 C -0.11 -1.46 10.01 22.28 0.22 -1.24 16 15 C 0.11 2.50 7.27 22.67 0.16 2.67 16 16 F -0.14 -4.60 16.65 44.97 0.75 -3.85 16 17 C 0.13 4.59 5.04 86.36 0.44 5.03 16 18 C -0.09 -3.04 2.15 -10.72 -0.02 -3.07 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.16 6.56 5.19 86.38 0.45 7.01 16 21 N -0.75 -40.80 5.38 -343.45 -1.85 -42.64 16 22 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 23 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 24 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 25 N -0.97 -64.22 13.06 21.65 0.28 -63.93 16 26 Si 0.98 48.36 29.55 68.60 2.03 50.38 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 30 H 0.05 1.09 6.57 -2.39 -0.02 1.08 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.07 4.99 -2.39 -0.01 1.06 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.44 4.74 -2.38 -0.01 1.43 16 36 H 0.10 1.31 6.70 -2.39 -0.02 1.30 16 37 H 0.17 2.11 7.37 -2.91 -0.02 2.09 16 38 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 39 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.08 2.69 6.69 -2.39 -0.02 2.67 16 41 H 0.05 2.29 6.23 -2.38 -0.01 2.28 16 42 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.03 1.31 6.72 -2.39 -0.02 1.30 16 44 H 0.37 22.20 6.89 -92.71 -0.64 21.56 16 45 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -83.53 363.62 4.64 -78.89 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.40 Total: 24.94 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.77 Total: 3.59 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -4.02 Total: -126.25 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 1.53 Total: -4.66 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.38 kcal Total: -83.53 4.64 -78.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.511 kcal (2) G-P(sol) polarization free energy of solvation -83.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds