Wall clock time and date at job start Tue Mar 31 2020 22:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46065 * 2 1 4 4 C 1.53038 * 109.44800 * 119.96544 * 2 1 3 5 5 C 1.53624 * 109.24385 * 58.52651 * 4 2 1 6 6 N 1.46925 * 108.54205 * 54.85473 * 5 4 2 7 7 C 1.34779 * 120.62880 * 126.37457 * 6 5 4 8 8 O 1.21569 * 119.99989 * 175.43756 * 7 6 5 9 9 C 1.47696 * 120.00207 * 355.71351 * 7 6 5 10 10 C 1.39657 * 120.15151 * 54.04827 * 9 7 6 11 11 C 1.38076 * 119.84990 * 179.70219 * 10 9 7 12 12 F 1.35095 * 119.91726 * 180.30055 * 11 10 9 13 13 C 1.38660 * 120.16274 * 0.57564 * 11 10 9 14 14 C 1.38187 * 120.31759 * 359.72584 * 13 11 10 15 15 C 1.38309 * 120.14174 * 359.97264 * 14 13 11 16 16 F 1.35102 * 120.08454 * 180.02562 * 15 14 13 17 17 C 1.46926 * 118.74070 * 306.09299 * 6 5 4 18 18 C 1.53041 * 109.46260 * 240.02481 * 2 1 3 19 19 H 1.08997 * 109.50286 * 181.40875 * 18 2 1 20 20 C 1.53007 * 109.52296 * 61.32565 * 18 2 1 21 21 N 1.46496 * 109.46860 * 175.14631 * 20 18 2 22 22 C 1.36946 * 119.99630 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00178 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99884 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99928 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99855 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46943 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46632 * 120.00184 * 26 24 22 29 29 H 1.48502 * 109.47086 * 239.99875 * 26 24 22 30 30 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46927 * 299.97602 * 1 2 3 32 32 H 1.08999 * 109.46732 * 59.97392 * 1 2 3 33 33 H 1.09007 * 109.49790 * 178.60155 * 4 2 1 34 34 H 1.09001 * 109.49750 * 298.66678 * 4 2 1 35 35 H 1.09000 * 109.73925 * 295.11808 * 5 4 2 36 36 H 1.09004 * 109.66784 * 174.55041 * 5 4 2 37 37 H 1.07995 * 120.07551 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.83970 * 179.74354 * 13 11 10 39 39 H 1.07993 * 119.93099 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.58750 * 173.64947 * 17 6 5 41 41 H 1.08996 * 109.58672 * 294.07571 * 17 6 5 42 42 H 1.09002 * 109.47040 * 295.15103 * 20 18 2 43 43 H 1.08998 * 109.46769 * 55.14801 * 20 18 2 44 44 H 0.97000 * 120.00474 * 359.97438 * 21 20 18 45 45 H 0.97005 * 119.99848 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4941 -2.1568 1.2643 6 7 1.8620 -2.8089 0.0002 7 6 2.5148 -3.9880 0.0003 8 8 2.7405 -4.5580 -1.0495 9 6 2.9507 -4.5907 1.2763 10 6 2.0289 -4.8000 2.3043 11 6 2.4419 -5.3696 3.4924 12 9 1.5501 -5.5783 4.4855 13 6 3.7709 -5.7225 3.6709 14 6 4.6901 -5.5127 2.6606 15 6 4.2892 -4.9489 1.4630 16 9 5.1887 -4.7447 0.4758 17 6 1.4993 -2.1542 -1.2642 18 6 2.0399 -0.7209 -1.2500 19 1 3.1296 -0.7433 -1.2381 20 6 1.5579 0.0190 -2.4994 21 7 2.1410 -0.6031 -3.6907 22 6 1.8507 -0.1071 -4.9338 23 1 1.1916 0.7423 -5.0359 24 6 2.4036 -0.6962 -6.0625 25 7 3.2065 -1.7317 -5.9381 26 14 2.0071 -0.0201 -7.7582 27 1 1.0860 1.1373 -7.6266 28 1 3.2612 0.4176 -8.4221 29 1 1.3584 -1.0781 -8.5737 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 3.1293 -0.7430 1.2385 34 1 1.6959 -0.1931 2.1398 35 1 0.4087 -2.1374 1.3631 36 1 1.9292 -2.7063 2.0991 37 1 0.9944 -4.5212 2.1687 38 1 4.0891 -6.1639 4.6038 39 1 5.7235 -5.7904 2.8061 40 1 1.9379 -2.7020 -2.0983 41 1 0.4144 -2.1346 -1.3674 42 1 0.4707 -0.0346 -2.5567 43 1 1.8678 1.0626 -2.4458 44 1 2.7332 -1.3658 -3.5990 45 1 3.5925 -2.1436 -6.7270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132894093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:19 Heat of formation + Delta-G solvation = -83.845872 kcal Electronic energy + Delta-G solvation = -29980.214013 eV Core-core repulsion = 25634.006792 eV Total energy + Delta-G solvation = -4346.207220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.35605 -49.16078 -40.71791 -38.98124 -37.82670 -34.99986 -33.63184 -32.16650 -31.68514 -30.44355 -29.78097 -27.69475 -25.97218 -25.12995 -23.86586 -23.32516 -22.92605 -21.22291 -20.36212 -18.62873 -17.92966 -17.77016 -17.50593 -17.02786 -16.75071 -16.20580 -15.87933 -15.61123 -15.07467 -15.02527 -14.91688 -14.78125 -14.58151 -14.24865 -13.85141 -13.64062 -13.56890 -13.18100 -12.98775 -12.82903 -12.77056 -12.53033 -12.29755 -11.94781 -11.78013 -11.67321 -11.26271 -11.09496 -10.91111 -10.80142 -10.66802 -10.28920 -10.21065 -10.02628 -9.87508 -9.63232 -9.52837 -9.01046 -8.82930 -8.52811 -6.86177 -5.69159 -2.99106 0.28497 0.49490 2.45049 2.77121 3.03089 3.47485 3.52272 3.55231 3.68185 3.73768 4.01677 4.23730 4.40082 4.58198 4.61198 4.68427 4.80315 4.87535 5.06551 5.14715 5.21867 5.29529 5.34643 5.43133 5.47007 5.53577 5.56741 5.61038 5.65230 5.67421 5.79467 5.86854 5.93304 6.00797 6.13477 6.23683 6.30758 6.33372 6.34847 6.53947 6.60263 6.77576 6.89429 7.35043 7.75514 8.08933 8.48364 9.59399 10.17300 10.51235 11.53109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.003052 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.423577 B = 9172.380380 C =10350.293556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.075 0.925 4 C -0.128 4.128 5 C 0.096 3.904 6 N -0.599 5.599 7 C 0.555 3.445 8 O -0.507 6.507 9 C -0.126 4.126 10 C -0.099 4.099 11 C 0.085 3.915 12 F -0.132 7.132 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.138 3.862 16 F -0.116 7.116 17 C 0.120 3.880 18 C -0.103 4.103 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -4.707 26.345 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.027 4.027 6 N -0.332 5.332 7 C 0.340 3.660 8 O -0.382 6.382 9 C -0.130 4.130 10 C -0.119 4.119 11 C 0.065 3.935 12 F -0.110 7.110 13 C -0.127 4.127 14 C -0.147 4.147 15 C 0.118 3.882 16 F -0.094 7.094 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.694 -4.909 25.610 26.132 hybrid contribution 0.045 0.131 -0.879 0.890 sum -1.650 -4.778 24.731 25.242 Atomic orbital electron populations 1.21992 0.95172 1.01961 1.01889 1.21080 0.96053 0.99458 0.93827 0.90697 1.22018 1.01204 0.94832 0.98597 1.22132 1.00466 0.94098 0.86026 1.48080 1.56450 1.20420 1.08267 1.17929 0.78694 0.81485 0.87858 1.90919 1.54718 1.60725 1.31840 1.19916 0.92990 1.04057 0.96037 1.21153 1.00900 0.98954 0.90846 1.17444 0.87436 1.02286 0.86301 1.91543 1.67189 1.92875 1.59434 1.21136 0.90979 1.00083 1.00502 1.21001 1.01681 1.00600 0.91371 1.17652 0.85736 0.98475 0.86365 1.91626 1.65775 1.92123 1.59849 1.21831 1.00179 0.93007 0.85063 1.21702 1.00972 0.94234 0.95302 0.90749 1.20674 0.96001 0.94720 0.85291 1.42437 1.57035 1.37536 1.00828 1.19234 1.23362 1.10920 0.83747 0.91194 1.24763 1.00046 0.98299 0.97820 1.69689 1.35530 1.24043 1.28415 0.86143 0.77375 0.77945 0.84871 1.20611 1.21918 1.21884 0.92479 0.93090 0.91694 0.91444 0.90751 0.90621 0.89827 0.83062 0.83217 0.82872 0.87739 0.90969 0.95896 0.96118 0.78120 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.11 37.16 0.30 -1.35 16 2 C -0.09 -1.02 2.71 -90.58 -0.25 -1.26 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.26 5.64 -26.39 -0.15 -1.41 16 5 C 0.10 0.94 5.08 -3.49 -0.02 0.92 16 6 N -0.60 -8.40 2.97 -173.67 -0.52 -8.91 16 7 C 0.55 8.83 6.91 -12.40 -0.09 8.74 16 8 O -0.51 -10.60 16.31 5.31 0.09 -10.51 16 9 C -0.13 -1.52 4.90 -104.92 -0.51 -2.04 16 10 C -0.10 -0.90 7.40 -39.11 -0.29 -1.19 16 11 C 0.08 0.68 7.29 -39.49 -0.29 0.39 16 12 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 13 C -0.11 -0.71 10.01 -39.44 -0.39 -1.11 16 14 C -0.13 -0.99 10.01 -39.57 -0.40 -1.39 16 15 C 0.14 1.61 7.27 -38.97 -0.28 1.33 16 16 F -0.12 -1.69 16.67 2.25 0.04 -1.66 16 17 C 0.12 2.01 5.04 -3.71 -0.02 1.99 16 18 C -0.10 -1.65 2.15 -90.49 -0.19 -1.85 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.20 5.19 -4.04 -0.02 3.18 16 21 N -0.73 -18.95 5.38 -59.91 -0.32 -19.28 16 22 C -0.24 -6.89 9.99 -15.05 -0.15 -7.04 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 26 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 30 H 0.06 0.61 4.96 -51.93 -0.26 0.36 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.64 6.69 -51.93 -0.35 0.29 16 36 H 0.08 0.70 4.71 -51.93 -0.24 0.45 16 37 H 0.15 1.16 7.35 -52.49 -0.39 0.78 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.10 2.21 6.23 -51.93 -0.32 1.89 16 41 H 0.07 1.14 6.69 -51.93 -0.35 0.80 16 42 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 10.69 6.89 -40.82 -0.28 10.41 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -34.58 363.65 -8.14 -42.72 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.81 Total: 6.28 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.84 Total: -2.56 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.11 Total: -56.61 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.58 -8.14 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.129 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds