Wall clock time and date at job start Tue Mar 31 2020 22:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46065 * 2 1 4 4 C 1.53038 * 109.44800 * 119.96544 * 2 1 3 5 5 C 1.53624 * 109.24385 * 58.52651 * 4 2 1 6 6 N 1.46925 * 108.54205 * 54.85473 * 5 4 2 7 7 C 1.34779 * 120.62880 * 126.37457 * 6 5 4 8 8 O 1.21569 * 119.99989 * 175.43756 * 7 6 5 9 9 C 1.47696 * 120.00207 * 355.71351 * 7 6 5 10 10 C 1.39657 * 120.15151 * 54.04827 * 9 7 6 11 11 C 1.38076 * 119.84990 * 179.70219 * 10 9 7 12 12 F 1.35095 * 119.91726 * 180.30055 * 11 10 9 13 13 C 1.38660 * 120.16274 * 0.57564 * 11 10 9 14 14 C 1.38187 * 120.31759 * 359.72584 * 13 11 10 15 15 C 1.38309 * 120.14174 * 359.97264 * 14 13 11 16 16 F 1.35102 * 120.08454 * 180.02562 * 15 14 13 17 17 C 1.46926 * 118.74070 * 306.09299 * 6 5 4 18 18 C 1.53041 * 109.46260 * 240.02481 * 2 1 3 19 19 H 1.08997 * 109.50286 * 181.40875 * 18 2 1 20 20 C 1.53007 * 109.52296 * 61.32565 * 18 2 1 21 21 N 1.46496 * 109.46860 * 175.14631 * 20 18 2 22 22 C 1.36946 * 119.99630 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00178 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99884 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99928 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99855 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46943 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46632 * 120.00184 * 26 24 22 29 29 H 1.48502 * 109.47086 * 239.99875 * 26 24 22 30 30 H 1.09005 * 109.46765 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46927 * 299.97602 * 1 2 3 32 32 H 1.08999 * 109.46732 * 59.97392 * 1 2 3 33 33 H 1.09007 * 109.49790 * 178.60155 * 4 2 1 34 34 H 1.09001 * 109.49750 * 298.66678 * 4 2 1 35 35 H 1.09000 * 109.73925 * 295.11808 * 5 4 2 36 36 H 1.09004 * 109.66784 * 174.55041 * 5 4 2 37 37 H 1.07995 * 120.07551 * 359.97438 * 10 9 7 38 38 H 1.08001 * 119.83970 * 179.74354 * 13 11 10 39 39 H 1.07993 * 119.93099 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.58750 * 173.64947 * 17 6 5 41 41 H 1.08996 * 109.58672 * 294.07571 * 17 6 5 42 42 H 1.09002 * 109.47040 * 295.15103 * 20 18 2 43 43 H 1.08998 * 109.46769 * 55.14801 * 20 18 2 44 44 H 0.97000 * 120.00474 * 359.97438 * 21 20 18 45 45 H 0.97005 * 119.99848 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4941 -2.1568 1.2643 6 7 1.8620 -2.8089 0.0002 7 6 2.5148 -3.9880 0.0003 8 8 2.7405 -4.5580 -1.0495 9 6 2.9507 -4.5907 1.2763 10 6 2.0289 -4.8000 2.3043 11 6 2.4419 -5.3696 3.4924 12 9 1.5501 -5.5783 4.4855 13 6 3.7709 -5.7225 3.6709 14 6 4.6901 -5.5127 2.6606 15 6 4.2892 -4.9489 1.4630 16 9 5.1887 -4.7447 0.4758 17 6 1.4993 -2.1542 -1.2642 18 6 2.0399 -0.7209 -1.2500 19 1 3.1296 -0.7433 -1.2381 20 6 1.5579 0.0190 -2.4994 21 7 2.1410 -0.6031 -3.6907 22 6 1.8507 -0.1071 -4.9338 23 1 1.1916 0.7423 -5.0359 24 6 2.4036 -0.6962 -6.0625 25 7 3.2065 -1.7317 -5.9381 26 14 2.0071 -0.0201 -7.7582 27 1 1.0860 1.1373 -7.6266 28 1 3.2612 0.4176 -8.4221 29 1 1.3584 -1.0781 -8.5737 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 3.1293 -0.7430 1.2385 34 1 1.6959 -0.1931 2.1398 35 1 0.4087 -2.1374 1.3631 36 1 1.9292 -2.7063 2.0991 37 1 0.9944 -4.5212 2.1687 38 1 4.0891 -6.1639 4.6038 39 1 5.7235 -5.7904 2.8061 40 1 1.9379 -2.7020 -2.0983 41 1 0.4144 -2.1346 -1.3674 42 1 0.4707 -0.0346 -2.5567 43 1 1.8678 1.0626 -2.4458 44 1 2.7332 -1.3658 -3.5990 45 1 3.5925 -2.1436 -6.7270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132894093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:18 Heat of formation + Delta-G solvation = -106.282494 kcal Electronic energy + Delta-G solvation = -29981.186938 eV Core-core repulsion = 25634.006792 eV Total energy + Delta-G solvation = -4347.180145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.13295 -49.99315 -41.82607 -39.90561 -38.97079 -36.68782 -35.04842 -33.53565 -32.83596 -31.38770 -31.17033 -28.75134 -27.47734 -26.27805 -25.00369 -24.70415 -23.83924 -22.61756 -21.45571 -19.83218 -19.00807 -18.77466 -18.64396 -18.33881 -17.77708 -17.11289 -16.88790 -16.76643 -16.46112 -16.16407 -16.11954 -15.74924 -15.48353 -15.39277 -15.32235 -14.98566 -14.58939 -14.51026 -14.27274 -14.04611 -13.83568 -13.70042 -13.26860 -13.07091 -12.90252 -12.80687 -12.66310 -12.56161 -12.47668 -12.14161 -12.02832 -11.92247 -11.77800 -11.45410 -11.26928 -11.08830 -10.96085 -10.34390 -9.79889 -9.67584 -9.02399 -7.95903 -5.26750 -0.46979 -0.19153 1.34023 1.43860 1.46195 1.56294 1.75118 2.19836 2.54024 2.93822 2.97125 3.22715 3.37138 3.51768 3.65117 3.75713 3.79434 3.81767 3.93786 4.02472 4.14772 4.22574 4.34077 4.42238 4.45989 4.54361 4.64671 4.69953 4.74108 4.77436 4.80309 4.82857 4.88689 4.91496 4.97079 5.08274 5.14682 5.23458 5.28041 5.36404 5.42150 5.47518 5.57417 5.59369 6.20787 6.24567 6.89936 7.29681 8.06124 8.28037 9.27813 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.003052 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.423577 B = 9172.380380 C =10350.293556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.089 3.911 6 N -0.594 5.594 7 C 0.547 3.453 8 O -0.577 6.577 9 C -0.144 4.144 10 C -0.094 4.094 11 C 0.093 3.907 12 F -0.128 7.128 13 C -0.085 4.085 14 C -0.112 4.112 15 C 0.106 3.894 16 F -0.145 7.145 17 C 0.129 3.871 18 C -0.090 4.090 19 H 0.047 0.953 20 C 0.160 3.840 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.977 3.023 27 H -0.261 1.261 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.181 0.819 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -3.809 30.413 30.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.160 4.160 5 C -0.031 4.031 6 N -0.325 5.325 7 C 0.335 3.665 8 O -0.457 6.457 9 C -0.149 4.149 10 C -0.113 4.113 11 C 0.073 3.927 12 F -0.106 7.106 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.086 3.914 16 F -0.124 7.124 17 C 0.006 3.994 18 C -0.110 4.110 19 H 0.065 0.935 20 C 0.034 3.966 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.185 1.185 28 H -0.221 1.221 29 H -0.222 1.222 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.183 0.817 38 H 0.207 0.793 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.144 -3.942 29.759 30.184 hybrid contribution 0.442 -0.148 -1.994 2.048 sum -2.702 -4.090 27.765 28.195 Atomic orbital electron populations 1.21967 0.93677 1.02224 1.02764 1.21075 0.97178 0.99336 0.92241 0.89997 1.22024 1.00576 0.94633 0.98808 1.22534 1.02211 0.94089 0.84299 1.48160 1.55533 1.19925 1.08861 1.18637 0.77745 0.81504 0.88611 1.90871 1.57402 1.62744 1.34668 1.19611 0.93994 1.06199 0.95049 1.21181 1.00866 0.98795 0.90446 1.17464 0.88014 1.01526 0.85693 1.91566 1.67253 1.92739 1.59090 1.21556 0.89818 0.97804 1.01198 1.21285 1.03362 0.98819 0.89624 1.18167 0.85388 1.00506 0.87356 1.91550 1.66680 1.92682 1.61438 1.21474 1.00040 0.92787 0.85082 1.21559 0.99239 0.94062 0.96154 0.93481 1.20870 0.96129 0.94794 0.84833 1.42719 1.57061 1.37323 1.02125 1.19711 1.22367 1.10539 0.84913 0.90133 1.25687 1.00595 0.98984 1.02053 1.69889 1.37435 1.25979 1.29081 0.85012 0.77185 0.77610 0.79583 1.18462 1.22064 1.22178 0.92495 0.89840 0.93218 0.92596 0.86673 0.88073 0.87690 0.81698 0.79279 0.80119 0.93343 0.90082 0.94866 0.95705 0.79955 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.11 71.98 0.58 -2.21 16 2 C -0.08 -1.75 2.71 -10.77 -0.03 -1.78 16 3 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.12 -2.05 5.64 30.82 0.17 -1.88 16 5 C 0.09 1.55 5.08 86.51 0.44 1.99 16 6 N -0.59 -17.22 2.97 -821.63 -2.44 -19.66 16 7 C 0.55 18.67 6.91 86.74 0.60 19.27 16 8 O -0.58 -26.83 16.31 -3.93 -0.06 -26.89 16 9 C -0.14 -3.53 4.90 -20.06 -0.10 -3.63 16 10 C -0.09 -1.51 7.40 22.57 0.17 -1.34 16 11 C 0.09 1.14 7.29 22.33 0.16 1.30 16 12 F -0.13 -1.58 17.26 44.97 0.78 -0.80 16 13 C -0.09 -0.75 10.01 22.36 0.22 -0.53 16 14 C -0.11 -1.46 10.01 22.27 0.22 -1.24 16 15 C 0.11 2.50 7.27 22.67 0.16 2.66 16 16 F -0.14 -4.60 16.67 44.97 0.75 -3.85 16 17 C 0.13 4.59 5.04 86.36 0.44 5.03 16 18 C -0.09 -3.04 2.15 -10.71 -0.02 -3.06 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.16 6.55 5.19 86.38 0.45 7.00 16 21 N -0.75 -40.76 5.38 -343.44 -1.85 -42.61 16 22 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 23 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 24 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 25 N -0.97 -64.20 13.06 21.65 0.28 -63.92 16 26 Si 0.98 48.37 29.55 68.60 2.03 50.39 16 27 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 29 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 30 H 0.06 1.07 4.96 -2.38 -0.01 1.06 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.09 6.58 -2.39 -0.02 1.07 16 33 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.32 6.69 -2.39 -0.02 1.30 16 36 H 0.11 1.44 4.71 -2.38 -0.01 1.43 16 37 H 0.17 2.11 7.35 -2.91 -0.02 2.09 16 38 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 39 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.05 2.29 6.23 -2.39 -0.01 2.28 16 41 H 0.08 2.68 6.69 -2.39 -0.02 2.67 16 42 H 0.03 1.31 6.73 -2.39 -0.02 1.30 16 43 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.37 22.18 6.89 -92.71 -0.64 21.55 16 45 H 0.25 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -83.56 363.65 4.67 -78.89 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.40 Total: 24.78 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.78 Total: 3.67 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -4.00 Total: -126.19 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 1.53 Total: -4.65 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.39 kcal Total: -83.56 4.67 -78.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.393 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds