Wall clock time and date at job start Tue Mar 31 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.44435 * 2 1 4 4 C 1.53046 * 109.46273 * 119.96362 * 2 1 3 5 5 C 1.52755 * 109.38510 * 181.26342 * 4 2 1 6 6 N 1.46931 * 109.00980 * 305.58953 * 5 4 2 7 7 C 1.34773 * 120.62956 * 233.58617 * 6 5 4 8 8 O 1.21574 * 119.99823 * 183.87255 * 7 6 5 9 9 C 1.47696 * 120.00349 * 3.86973 * 7 6 5 10 10 C 1.39655 * 120.15399 * 305.93448 * 9 7 6 11 11 C 1.38068 * 119.84888 * 180.02562 * 10 9 7 12 12 F 1.35098 * 119.91470 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.16730 * 0.02562 * 11 10 9 14 14 C 1.38188 * 120.31246 * 359.71829 * 13 11 10 15 15 C 1.38306 * 120.14570 * 0.56044 * 14 13 11 16 16 F 1.35106 * 120.08322 * 179.72148 * 15 14 13 17 17 C 1.46929 * 118.73411 * 53.30886 * 6 5 4 18 18 C 1.53040 * 109.46347 * 240.03562 * 2 1 3 19 19 H 1.09005 * 109.49384 * 298.56423 * 18 2 1 20 20 C 1.53002 * 109.52152 * 58.64314 * 18 2 1 21 21 N 1.46505 * 109.46690 * 184.85362 * 20 18 2 22 22 C 1.36936 * 119.99485 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00180 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99752 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99921 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00001 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47342 * 59.99686 * 26 24 22 28 28 H 1.48501 * 109.47019 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47289 * 299.99345 * 26 24 22 30 30 H 1.09004 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47376 * 299.96388 * 1 2 3 32 32 H 1.08999 * 109.47149 * 59.96507 * 1 2 3 33 33 H 1.09005 * 109.49789 * 301.34216 * 4 2 1 34 34 H 1.09002 * 109.49147 * 61.40334 * 4 2 1 35 35 H 1.08998 * 109.51157 * 185.70567 * 5 4 2 36 36 H 1.09002 * 109.43230 * 65.42375 * 5 4 2 37 37 H 1.08002 * 120.07344 * 0.02562 * 10 9 7 38 38 H 1.08000 * 119.84002 * 180.02562 * 13 11 10 39 39 H 1.07998 * 119.92302 * 180.28121 * 14 13 11 40 40 H 1.08994 * 109.58603 * 66.43283 * 17 6 5 41 41 H 1.09001 * 109.58012 * 186.86084 * 17 6 5 42 42 H 1.08989 * 109.47146 * 304.85435 * 20 18 2 43 43 H 1.08999 * 109.46864 * 64.85757 * 20 18 2 44 44 H 0.96992 * 119.99996 * 0.02562 * 21 20 18 45 45 H 0.96996 * 120.00468 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5672 -0.6922 1.2643 6 7 4.0680 -1.2487 0.0000 7 6 4.9615 -2.2576 0.0001 8 8 5.4215 -2.6623 -1.0500 9 6 5.3820 -2.8717 1.2758 10 6 5.8858 -2.0744 2.3058 11 6 6.2775 -2.6551 3.4956 12 9 6.7654 -1.8851 4.4926 13 6 6.1723 -4.0267 3.6693 14 6 5.6699 -4.8215 2.6566 15 6 5.2791 -4.2541 1.4574 16 9 4.7933 -5.0330 0.4661 17 6 3.5714 -0.6884 -1.2642 18 6 2.0399 -0.7207 -1.2501 19 1 1.6979 -1.7556 -1.2383 20 6 1.5028 -0.0195 -2.4994 21 7 1.8952 -0.7764 -3.6908 22 6 1.5251 -0.3367 -4.9338 23 1 0.9444 0.5681 -5.0357 24 6 1.8964 -1.0541 -6.0627 25 7 2.6046 -2.1565 -5.9384 26 14 1.3922 -0.4540 -7.7583 27 1 1.9557 0.8998 -7.9921 28 1 1.9097 -1.3898 -8.7886 29 1 -0.0893 -0.3948 -7.8422 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6572 -0.2207 2.1399 34 1 1.6974 -1.7554 1.2386 35 1 3.9347 -1.2906 2.0979 36 1 3.9097 0.3370 1.3716 37 1 5.9687 -1.0059 2.1719 38 1 6.4799 -4.4753 4.6023 39 1 5.5865 -5.8886 2.8003 40 1 3.9143 0.3411 -1.3672 41 1 3.9417 -1.2844 -2.0983 42 1 0.4156 0.0358 -2.4458 43 1 1.9156 0.9877 -2.5565 44 1 2.4170 -1.5888 -3.5992 45 1 2.8644 -2.6576 -6.7272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132894094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:22 Heat of formation + Delta-G solvation = -86.957103 kcal Electronic energy + Delta-G solvation = -29834.582547 eV Core-core repulsion = 25488.240413 eV Total energy + Delta-G solvation = -4346.342133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35569 -49.15984 -40.63993 -38.88288 -37.77072 -35.05069 -33.76103 -32.26041 -31.68434 -30.44923 -29.79783 -28.23683 -25.83269 -24.76067 -23.38269 -23.14852 -22.81884 -21.25277 -20.34127 -19.45971 -17.98033 -17.88763 -17.55118 -17.03111 -16.70602 -16.20891 -15.90206 -15.60488 -15.04935 -14.85365 -14.78596 -14.65491 -14.38294 -14.15424 -13.92193 -13.71382 -13.47996 -13.16724 -13.09279 -12.87509 -12.68737 -12.52073 -12.30372 -11.92874 -11.83936 -11.69397 -11.51809 -10.99081 -10.88648 -10.79755 -10.62126 -10.32015 -10.19086 -10.05224 -9.89364 -9.62042 -9.51274 -9.01262 -8.82147 -8.58007 -6.85617 -5.68435 -2.98409 0.28274 0.49477 2.44737 2.76420 3.03423 3.48330 3.52256 3.54097 3.68108 3.73660 4.01400 4.23516 4.39914 4.58494 4.60769 4.67769 4.80916 4.85717 5.05627 5.12254 5.23319 5.32433 5.35876 5.43392 5.47366 5.56674 5.61582 5.62685 5.66673 5.69761 5.79181 5.89595 5.93254 6.01466 6.15632 6.22204 6.23821 6.31817 6.43794 6.53959 6.58028 6.81158 6.89443 7.34296 7.74862 8.08493 8.49099 9.59923 10.17889 10.51918 11.53732 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003022 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.910645 B = 9264.662736 C =10364.998836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.097 3.903 6 N -0.600 5.600 7 C 0.555 3.445 8 O -0.507 6.507 9 C -0.126 4.126 10 C -0.099 4.099 11 C 0.085 3.915 12 F -0.132 7.132 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.139 3.861 16 F -0.116 7.116 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.243 4.243 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.028 0.972 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -0.396 26.298 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.026 4.026 6 N -0.333 5.333 7 C 0.341 3.659 8 O -0.382 6.382 9 C -0.130 4.130 10 C -0.118 4.118 11 C 0.065 3.935 12 F -0.110 7.110 13 C -0.127 4.127 14 C -0.147 4.147 15 C 0.118 3.882 16 F -0.094 7.094 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.657 -0.518 25.557 25.983 hybrid contribution -0.111 0.042 -0.873 0.881 sum 4.546 -0.475 24.683 25.103 Atomic orbital electron populations 1.21879 0.94856 1.02004 1.01746 1.21099 0.96085 0.99362 0.93814 0.90971 1.21915 0.94397 1.01763 0.98649 1.21918 0.95246 0.99320 0.86074 1.48092 1.42284 1.34645 1.08262 1.17928 0.80093 0.80048 0.87867 1.90921 1.54100 1.61347 1.31817 1.19912 1.04427 0.92648 0.96054 1.21155 0.98604 1.01276 0.90793 1.17442 1.00859 0.89001 0.86180 1.91544 1.85441 1.74922 1.59137 1.21137 0.99519 0.91512 1.00514 1.21001 1.00572 1.01777 0.91321 1.17652 0.97114 0.87168 0.86267 1.91628 1.84587 1.73603 1.59542 1.21819 0.93840 0.99304 0.85116 1.21731 0.94255 1.00896 0.95303 0.90703 1.20714 0.96853 0.94031 0.85273 1.42411 1.65314 1.29267 1.00791 1.19144 1.28077 1.06418 0.83780 0.91304 1.24757 1.00796 0.97506 0.97800 1.69661 1.42136 1.17263 1.28663 0.86288 0.77948 0.77648 0.84389 1.21313 1.21713 1.21344 0.92760 0.93200 0.91565 0.90670 0.91448 0.89752 0.90917 0.83039 0.83213 0.82869 0.91196 0.87615 0.95466 0.96363 0.78127 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.81 37.16 0.33 -1.37 16 2 C -0.08 -1.01 2.23 -90.58 -0.20 -1.21 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.27 5.35 -26.83 -0.14 -1.41 16 5 C 0.10 0.95 5.49 -3.93 -0.02 0.93 16 6 N -0.60 -8.44 2.98 -174.20 -0.52 -8.96 16 7 C 0.55 8.85 6.92 -12.40 -0.09 8.76 16 8 O -0.51 -10.60 16.29 5.30 0.09 -10.52 16 9 C -0.13 -1.53 4.89 -104.92 -0.51 -2.04 16 10 C -0.10 -0.90 7.41 -39.11 -0.29 -1.19 16 11 C 0.08 0.67 7.29 -39.49 -0.29 0.39 16 12 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 13 C -0.11 -0.71 10.01 -39.45 -0.40 -1.10 16 14 C -0.13 -0.99 10.01 -39.57 -0.40 -1.39 16 15 C 0.14 1.62 7.27 -38.97 -0.28 1.33 16 16 F -0.12 -1.70 16.65 2.25 0.04 -1.66 16 17 C 0.12 2.02 5.51 -3.71 -0.02 2.00 16 18 C -0.10 -1.65 1.92 -90.50 -0.17 -1.82 16 19 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 20 C 0.16 3.16 5.41 -4.04 -0.02 3.14 16 21 N -0.73 -18.94 5.38 -59.91 -0.32 -19.26 16 22 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 26 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.70 4.74 -51.93 -0.25 0.45 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.15 1.16 7.37 -52.49 -0.39 0.77 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.11 2.24 6.23 -51.93 -0.32 1.91 16 42 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.69 6.89 -40.82 -0.28 10.41 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -34.54 369.69 -8.24 -42.78 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.08 Total: 6.15 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.75 Total: -2.54 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.12 Total: -56.65 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -8.24 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.182 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds