Wall clock time and date at job start Tue Mar 31 2020 22:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.44435 * 2 1 4 4 C 1.53046 * 109.46273 * 119.96362 * 2 1 3 5 5 C 1.52755 * 109.38510 * 181.26342 * 4 2 1 6 6 N 1.46931 * 109.00980 * 305.58953 * 5 4 2 7 7 C 1.34773 * 120.62956 * 233.58617 * 6 5 4 8 8 O 1.21574 * 119.99823 * 183.87255 * 7 6 5 9 9 C 1.47696 * 120.00349 * 3.86973 * 7 6 5 10 10 C 1.39655 * 120.15399 * 305.93448 * 9 7 6 11 11 C 1.38068 * 119.84888 * 180.02562 * 10 9 7 12 12 F 1.35098 * 119.91470 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.16730 * 0.02562 * 11 10 9 14 14 C 1.38188 * 120.31246 * 359.71829 * 13 11 10 15 15 C 1.38306 * 120.14570 * 0.56044 * 14 13 11 16 16 F 1.35106 * 120.08322 * 179.72148 * 15 14 13 17 17 C 1.46929 * 118.73411 * 53.30886 * 6 5 4 18 18 C 1.53040 * 109.46347 * 240.03562 * 2 1 3 19 19 H 1.09005 * 109.49384 * 298.56423 * 18 2 1 20 20 C 1.53002 * 109.52152 * 58.64314 * 18 2 1 21 21 N 1.46505 * 109.46690 * 184.85362 * 20 18 2 22 22 C 1.36936 * 119.99485 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00180 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99752 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99921 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00001 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47342 * 59.99686 * 26 24 22 28 28 H 1.48501 * 109.47019 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47289 * 299.99345 * 26 24 22 30 30 H 1.09004 * 109.46807 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47376 * 299.96388 * 1 2 3 32 32 H 1.08999 * 109.47149 * 59.96507 * 1 2 3 33 33 H 1.09005 * 109.49789 * 301.34216 * 4 2 1 34 34 H 1.09002 * 109.49147 * 61.40334 * 4 2 1 35 35 H 1.08998 * 109.51157 * 185.70567 * 5 4 2 36 36 H 1.09002 * 109.43230 * 65.42375 * 5 4 2 37 37 H 1.08002 * 120.07344 * 0.02562 * 10 9 7 38 38 H 1.08000 * 119.84002 * 180.02562 * 13 11 10 39 39 H 1.07998 * 119.92302 * 180.28121 * 14 13 11 40 40 H 1.08994 * 109.58603 * 66.43283 * 17 6 5 41 41 H 1.09001 * 109.58012 * 186.86084 * 17 6 5 42 42 H 1.08989 * 109.47146 * 304.85435 * 20 18 2 43 43 H 1.08999 * 109.46864 * 64.85757 * 20 18 2 44 44 H 0.96992 * 119.99996 * 0.02562 * 21 20 18 45 45 H 0.96996 * 120.00468 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5672 -0.6922 1.2643 6 7 4.0680 -1.2487 0.0000 7 6 4.9615 -2.2576 0.0001 8 8 5.4215 -2.6623 -1.0500 9 6 5.3820 -2.8717 1.2758 10 6 5.8858 -2.0744 2.3058 11 6 6.2775 -2.6551 3.4956 12 9 6.7654 -1.8851 4.4926 13 6 6.1723 -4.0267 3.6693 14 6 5.6699 -4.8215 2.6566 15 6 5.2791 -4.2541 1.4574 16 9 4.7933 -5.0330 0.4661 17 6 3.5714 -0.6884 -1.2642 18 6 2.0399 -0.7207 -1.2501 19 1 1.6979 -1.7556 -1.2383 20 6 1.5028 -0.0195 -2.4994 21 7 1.8952 -0.7764 -3.6908 22 6 1.5251 -0.3367 -4.9338 23 1 0.9444 0.5681 -5.0357 24 6 1.8964 -1.0541 -6.0627 25 7 2.6046 -2.1565 -5.9384 26 14 1.3922 -0.4540 -7.7583 27 1 1.9557 0.8998 -7.9921 28 1 1.9097 -1.3898 -8.7886 29 1 -0.0893 -0.3948 -7.8422 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6572 -0.2207 2.1399 34 1 1.6974 -1.7554 1.2386 35 1 3.9347 -1.2906 2.0979 36 1 3.9097 0.3370 1.3716 37 1 5.9687 -1.0059 2.1719 38 1 6.4799 -4.4753 4.6023 39 1 5.5865 -5.8886 2.8003 40 1 3.9143 0.3411 -1.3672 41 1 3.9417 -1.2844 -2.0983 42 1 0.4156 0.0358 -2.4458 43 1 1.9156 0.9877 -2.5565 44 1 2.4170 -1.5888 -3.5992 45 1 2.8644 -2.6576 -6.7272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132894094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:21 Heat of formation + Delta-G solvation = -109.163141 kcal Electronic energy + Delta-G solvation = -29835.545473 eV Core-core repulsion = 25488.240413 eV Total energy + Delta-G solvation = -4347.305059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.13248 -49.99219 -41.74303 -39.80122 -38.93990 -36.68442 -35.20023 -33.59889 -32.87104 -31.40022 -31.18124 -29.31950 -27.45056 -25.74971 -25.01383 -24.04271 -23.76514 -22.62715 -21.49370 -20.56681 -19.20930 -18.80423 -18.70223 -18.36502 -17.73149 -17.10732 -16.87840 -16.75975 -16.45842 -16.18125 -15.64727 -15.55868 -15.53180 -15.46233 -15.27210 -15.00318 -14.54423 -14.32556 -14.24167 -14.16250 -13.98002 -13.69733 -13.27568 -13.06784 -12.94024 -12.76816 -12.70460 -12.62941 -12.52247 -12.22613 -12.04468 -11.93084 -11.82676 -11.42296 -11.23700 -11.08139 -10.91899 -10.34080 -9.83241 -9.71339 -9.01273 -7.95098 -5.25886 -0.47144 -0.19091 1.33662 1.43828 1.48434 1.54695 1.75059 2.20059 2.54642 2.93750 2.97097 3.22585 3.37495 3.51648 3.64420 3.75139 3.77861 3.82128 3.93257 4.00726 4.15990 4.21808 4.34722 4.43101 4.49987 4.56635 4.67700 4.72308 4.76334 4.78046 4.79921 4.82902 4.91070 4.91518 4.94134 5.05207 5.10715 5.21308 5.24130 5.37740 5.46941 5.47307 5.55907 5.57546 6.20293 6.25005 6.89672 7.30209 8.07007 8.28953 9.28240 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015165 B = 0.003022 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.910645 B = 9264.662736 C =10364.998836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.123 4.123 5 C 0.090 3.910 6 N -0.595 5.595 7 C 0.547 3.453 8 O -0.577 6.577 9 C -0.145 4.145 10 C -0.093 4.093 11 C 0.092 3.908 12 F -0.128 7.128 13 C -0.085 4.085 14 C -0.113 4.113 15 C 0.106 3.894 16 F -0.145 7.145 17 C 0.127 3.873 18 C -0.089 4.089 19 H 0.047 0.953 20 C 0.158 3.842 21 N -0.749 5.749 22 C -0.246 4.246 23 H 0.080 0.920 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.190 0.810 39 H 0.181 0.819 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.026 0.974 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 1.221 30.361 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.030 4.030 6 N -0.326 5.326 7 C 0.335 3.665 8 O -0.457 6.457 9 C -0.149 4.149 10 C -0.112 4.112 11 C 0.073 3.927 12 F -0.107 7.107 13 C -0.104 4.104 14 C -0.131 4.131 15 C 0.086 3.914 16 F -0.124 7.124 17 C 0.004 3.996 18 C -0.108 4.108 19 H 0.065 0.935 20 C 0.031 3.969 21 N -0.392 5.392 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.183 0.817 38 H 0.207 0.793 39 H 0.199 0.801 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.184 1.168 29.701 30.017 hybrid contribution 0.033 -0.419 -1.985 2.029 sum 4.218 0.749 27.716 28.045 Atomic orbital electron populations 1.21854 0.94186 1.01622 1.02557 1.21102 0.96559 0.99780 0.92260 0.89250 1.21917 0.94079 1.01217 0.98848 1.22325 0.95440 1.00953 0.84290 1.48178 1.41461 1.34063 1.08879 1.18638 0.79513 0.79704 0.88619 1.90873 1.56753 1.63414 1.34650 1.19606 1.07075 0.93131 0.95065 1.21184 0.97969 1.01703 0.90380 1.17461 1.00104 0.89570 0.85574 1.91567 1.85288 1.75004 1.58796 1.21556 0.96913 0.90683 1.01207 1.21284 0.98972 1.03283 0.89575 1.18170 0.98946 0.87046 0.87249 1.91551 1.85373 1.74283 1.61148 1.21486 0.94269 0.98658 0.85187 1.21577 0.93593 0.99526 0.96136 0.93493 1.20920 0.97234 0.93923 0.84805 1.42691 1.65133 1.29265 1.02087 1.19643 1.26915 1.06283 0.84959 0.90167 1.25683 1.01567 0.97948 1.02049 1.69870 1.44253 1.19007 1.29243 0.85147 0.78008 0.77153 0.79063 1.20113 1.22422 1.20012 0.93777 0.89990 0.93099 0.86566 0.92729 0.87636 0.88127 0.81657 0.79278 0.80123 0.90233 0.93159 0.94731 0.95575 0.79976 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.81 71.98 0.63 -2.39 16 2 C -0.08 -1.72 2.23 -10.76 -0.02 -1.74 16 3 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.12 -2.05 5.35 30.53 0.16 -1.88 16 5 C 0.09 1.56 5.49 86.22 0.47 2.04 16 6 N -0.59 -17.27 2.98 -823.32 -2.45 -19.72 16 7 C 0.55 18.69 6.92 86.74 0.60 19.29 16 8 O -0.58 -26.85 16.29 -3.95 -0.06 -26.92 16 9 C -0.14 -3.53 4.89 -20.06 -0.10 -3.63 16 10 C -0.09 -1.50 7.41 22.57 0.17 -1.33 16 11 C 0.09 1.13 7.29 22.33 0.16 1.29 16 12 F -0.13 -1.58 17.26 44.97 0.78 -0.80 16 13 C -0.09 -0.75 10.01 22.36 0.22 -0.53 16 14 C -0.11 -1.47 10.01 22.27 0.22 -1.24 16 15 C 0.11 2.50 7.27 22.66 0.16 2.67 16 16 F -0.15 -4.61 16.65 44.97 0.75 -3.86 16 17 C 0.13 4.52 5.51 86.36 0.48 5.00 16 18 C -0.09 -2.97 1.92 -10.72 -0.02 -2.99 16 19 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 20 C 0.16 6.43 5.41 86.38 0.47 6.90 16 21 N -0.75 -40.73 5.38 -343.45 -1.85 -42.57 16 22 C -0.25 -14.44 9.99 84.03 0.84 -13.61 16 23 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 24 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 25 N -0.97 -64.21 13.06 21.65 0.28 -63.93 16 26 Si 0.98 48.34 29.55 68.60 2.03 50.36 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 29 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 30 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.05 1.21 6.30 -2.39 -0.02 1.20 16 33 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.43 4.74 -2.39 -0.01 1.42 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.17 2.10 7.37 -2.91 -0.02 2.08 16 38 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 39 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.05 2.38 6.23 -2.39 -0.01 2.36 16 42 H 0.03 1.39 6.15 -2.39 -0.01 1.37 16 43 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.37 22.17 6.89 -92.71 -0.64 21.54 16 45 H 0.25 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -83.59 369.69 4.78 -78.81 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.39 Total: 25.23 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.92 Total: 3.41 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -4.02 Total: -126.22 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.06 Total: -26.92 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.53 Total: -4.67 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal Total: -83.59 4.78 -78.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.357 kcal (2) G-P(sol) polarization free energy of solvation -83.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds