Wall clock time and date at job start Tue Mar 31 2020 22:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46047 * 2 1 4 4 C 1.53041 * 109.44551 * 240.03013 * 2 1 3 5 5 C 1.53622 * 109.23937 * 178.49744 * 4 2 1 6 6 N 1.46924 * 108.54605 * 54.85824 * 5 4 2 7 7 C 1.34772 * 120.63502 * 126.36480 * 6 5 4 8 8 O 1.21573 * 119.99597 * 3.87705 * 7 6 5 9 9 C 1.47694 * 120.00527 * 183.87208 * 7 6 5 10 10 C 1.39658 * 120.15595 * 305.80501 * 9 7 6 11 11 C 1.38061 * 119.85315 * 180.02562 * 10 9 7 12 12 F 1.35101 * 119.92074 * 179.97438 * 11 10 9 13 13 C 1.38662 * 120.16337 * 0.25327 * 11 10 9 14 14 C 1.38182 * 120.31585 * 359.48340 * 13 11 10 15 15 C 1.38306 * 120.14450 * 0.51967 * 14 13 11 16 16 F 1.35099 * 120.08723 * 179.76508 * 15 14 13 17 17 C 1.46925 * 118.73683 * 306.09649 * 6 5 4 18 18 C 1.53042 * 109.45858 * 119.97294 * 2 1 3 19 19 H 1.08994 * 109.50189 * 61.42045 * 18 2 1 20 20 C 1.53000 * 109.52230 * 301.33627 * 18 2 1 21 21 N 1.46500 * 109.47185 * 175.15123 * 20 18 2 22 22 C 1.36932 * 120.00146 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00196 * 359.97438 * 22 21 20 24 24 C 1.38818 * 119.99861 * 179.97438 * 22 21 20 25 25 N 1.31614 * 120.00364 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99748 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47272 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47198 * 120.00322 * 26 24 22 29 29 H 1.48508 * 109.47006 * 239.99901 * 26 24 22 30 30 H 1.09000 * 109.47041 * 300.03020 * 1 2 3 31 31 H 1.08998 * 109.47053 * 60.02760 * 1 2 3 32 32 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.50128 * 298.57107 * 4 2 1 34 34 H 1.09002 * 109.49831 * 58.64365 * 4 2 1 35 35 H 1.09001 * 109.74205 * 295.11792 * 5 4 2 36 36 H 1.08998 * 109.66756 * 174.55323 * 5 4 2 37 37 H 1.08005 * 120.07196 * 0.03733 * 10 9 7 38 38 H 1.08004 * 119.83715 * 179.74514 * 13 11 10 39 39 H 1.08001 * 119.92704 * 180.28088 * 14 13 11 40 40 H 1.09001 * 109.59213 * 173.64530 * 17 6 5 41 41 H 1.09005 * 109.59038 * 294.06782 * 17 6 5 42 42 H 1.09003 * 109.47307 * 295.14595 * 20 18 2 43 43 H 1.08997 * 109.47418 * 55.14580 * 20 18 2 44 44 H 0.97005 * 119.99510 * 359.97438 * 21 20 18 45 45 H 0.96993 * 120.00390 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7209 -1.2501 5 6 3.5752 -0.6853 -1.2645 6 7 4.0676 -1.2494 -0.0004 7 6 4.9616 -2.2579 -0.0004 8 8 5.4215 -2.6624 -1.0506 9 6 5.3826 -2.8718 1.2752 10 6 5.8887 -2.0745 2.3041 11 6 6.2809 -2.6550 3.4938 12 9 6.7712 -1.8851 4.4899 13 6 6.1782 -4.0270 3.6668 14 6 5.6734 -4.8217 2.6554 15 6 5.2767 -4.2538 1.4583 16 9 4.7877 -5.0325 0.4684 17 6 3.5714 -0.6890 1.2639 18 6 2.0398 -0.7209 1.2500 19 1 1.6976 -1.7557 1.2383 20 6 1.5030 -0.0196 2.4994 21 7 1.8953 -0.7765 3.6908 22 6 1.5247 -0.3373 4.9337 23 1 0.9435 0.5672 5.0358 24 6 1.8959 -1.0548 6.0626 25 7 2.6046 -2.1569 5.9384 26 14 1.3909 -0.4554 7.7582 27 1 0.6067 0.7987 7.6265 28 1 0.5604 -1.4917 8.4225 29 1 2.6048 -0.1963 8.5735 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6973 -1.7557 -1.2383 34 1 1.6564 -0.2211 -2.1399 35 1 3.9187 0.3445 -1.3635 36 1 3.9482 -1.2788 -2.0992 37 1 5.9729 -1.0062 2.1695 38 1 6.4904 -4.4760 4.5981 39 1 5.5919 -5.8890 2.7986 40 1 3.9416 -1.2850 2.0981 41 1 3.9145 0.3404 1.3671 42 1 1.9161 0.9875 2.5565 43 1 0.4158 0.0361 2.4460 44 1 2.4170 -1.5891 3.5991 45 1 2.8638 -2.6584 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132894095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:24 Heat of formation + Delta-G solvation = -106.432912 kcal Electronic energy + Delta-G solvation = -30828.315101 eV Core-core repulsion = 26481.128434 eV Total energy + Delta-G solvation = -4347.186668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11273 -49.96693 -41.73152 -39.70715 -38.98197 -36.47637 -35.18807 -33.75563 -32.69498 -31.33027 -31.13120 -29.29370 -27.21706 -25.87210 -25.01934 -24.13256 -23.69911 -22.48710 -21.44632 -20.55150 -19.14979 -18.83759 -18.70845 -18.36085 -17.73368 -17.03568 -16.85957 -16.68206 -16.43182 -16.20913 -15.70970 -15.57750 -15.46981 -15.38090 -15.18591 -14.96098 -14.49694 -14.38569 -14.21773 -14.03140 -13.97404 -13.64421 -13.22191 -13.01041 -12.93172 -12.82513 -12.66596 -12.61400 -12.54534 -12.14032 -11.98696 -11.91525 -11.79090 -11.39002 -11.19352 -11.08596 -10.87259 -10.30046 -9.80725 -9.67235 -8.90483 -7.87610 -5.14998 -0.42805 -0.13898 1.31447 1.49593 1.51082 1.59243 1.76442 2.26534 2.59848 2.94586 2.96554 3.24965 3.45951 3.51173 3.64190 3.78272 3.80040 3.85134 3.96764 4.02917 4.14186 4.27215 4.37348 4.44947 4.51035 4.60898 4.67637 4.76211 4.78130 4.79616 4.81864 4.84746 4.88310 4.93432 4.95046 5.07845 5.13014 5.17905 5.25187 5.44332 5.46347 5.55823 5.59002 5.59589 6.11507 6.33711 6.84335 7.41175 8.15119 8.38878 9.34769 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008348 B = 0.005681 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.194621 B = 4927.741420 C = 7391.174096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.119 4.119 5 C 0.106 3.894 6 N -0.593 5.593 7 C 0.564 3.436 8 O -0.562 6.562 9 C -0.149 4.149 10 C -0.095 4.095 11 C 0.088 3.912 12 F -0.138 7.138 13 C -0.093 4.093 14 C -0.115 4.115 15 C 0.114 3.886 16 F -0.134 7.134 17 C 0.108 3.892 18 C -0.092 4.092 19 H 0.052 0.948 20 C 0.158 3.842 21 N -0.742 5.742 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.065 4.065 25 N -0.955 5.955 26 Si 0.961 3.039 27 H -0.270 1.270 28 H -0.297 1.297 29 H -0.296 1.296 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.183 0.817 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.028 0.972 43 H 0.031 0.969 44 H 0.373 0.627 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 0.881 -12.169 12.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.107 0.893 4 C -0.157 4.157 5 C -0.015 4.015 6 N -0.324 5.324 7 C 0.352 3.648 8 O -0.442 6.442 9 C -0.153 4.153 10 C -0.114 4.114 11 C 0.069 3.931 12 F -0.116 7.116 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.093 3.907 16 F -0.113 7.113 17 C -0.014 4.014 18 C -0.112 4.112 19 H 0.071 0.929 20 C 0.031 3.969 21 N -0.385 5.385 22 C -0.374 4.374 23 H 0.091 0.909 24 C -0.259 4.259 25 N -0.606 5.606 26 Si 0.791 3.209 27 H -0.194 1.194 28 H -0.224 1.224 29 H -0.223 1.223 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.172 0.828 38 H 0.192 0.808 39 H 0.200 0.800 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.205 0.795 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.137 0.834 -12.638 13.324 hybrid contribution -0.100 -0.225 1.360 1.382 sum 4.038 0.609 -11.278 11.995 Atomic orbital electron populations 1.21850 0.94271 1.01634 1.02472 1.21090 0.96489 0.99776 0.92398 0.89323 1.22017 0.93575 1.01044 0.99030 1.21982 0.94889 0.99838 0.84781 1.48146 1.41470 1.33749 1.09044 1.18108 0.79278 0.79561 0.87843 1.90757 1.56698 1.63526 1.33264 1.19665 1.06667 0.93005 0.95998 1.21095 0.98287 1.01188 0.90876 1.17672 1.00010 0.89787 0.85649 1.91529 1.85160 1.75295 1.59622 1.21464 0.97675 0.90992 1.01002 1.21220 0.98960 1.03103 0.90039 1.17814 0.98841 0.86989 0.87020 1.91513 1.85233 1.74059 1.60489 1.22077 0.94689 0.99892 0.84748 1.21587 0.94087 0.99774 0.95704 0.92901 1.20881 0.97182 0.94044 0.84759 1.42549 1.65148 1.29227 1.01604 1.19556 1.26804 1.06089 0.84955 0.90942 1.25374 1.01682 0.98071 1.00725 1.69777 1.43795 1.18359 1.28641 0.85260 0.77008 0.77488 0.81111 1.19440 1.22431 1.22313 0.92702 0.90589 0.93707 0.92901 0.87514 0.88840 0.89752 0.82759 0.80804 0.80005 0.90137 0.89483 0.95451 0.95141 0.79522 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.81 71.98 0.63 -2.36 16 2 C -0.08 -1.70 2.23 -10.77 -0.02 -1.72 16 3 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -2.30 5.38 30.82 0.17 -2.14 16 5 C 0.11 2.34 6.45 86.51 0.56 2.90 16 6 N -0.59 -16.64 2.97 -821.65 -2.44 -19.07 16 7 C 0.56 18.62 6.92 86.74 0.60 19.22 16 8 O -0.56 -21.29 16.29 -3.94 -0.06 -21.35 16 9 C -0.15 -4.76 4.89 -20.06 -0.10 -4.86 16 10 C -0.10 -2.89 7.40 22.57 0.17 -2.72 16 11 C 0.09 2.72 7.29 22.33 0.16 2.88 16 12 F -0.14 -4.63 17.26 44.97 0.78 -3.86 16 13 C -0.09 -2.42 10.01 22.36 0.22 -2.20 16 14 C -0.11 -2.89 10.01 22.27 0.22 -2.67 16 15 C 0.11 3.50 7.27 22.67 0.16 3.67 16 16 F -0.13 -4.43 16.66 44.97 0.75 -3.68 16 17 C 0.11 3.15 4.61 86.36 0.40 3.55 16 18 C -0.09 -2.71 1.92 -10.71 -0.02 -2.73 16 19 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 20 C 0.16 5.72 5.41 86.38 0.47 6.19 16 21 N -0.74 -35.16 5.38 -343.45 -1.85 -37.01 16 22 C -0.24 -12.85 9.99 84.04 0.84 -12.01 16 23 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 24 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 25 N -0.96 -55.01 13.06 21.65 0.28 -54.72 16 26 Si 0.96 44.76 29.55 68.60 2.03 46.79 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 29 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 30 H 0.05 1.25 6.30 -2.39 -0.02 1.24 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 2.04 7.03 -2.39 -0.02 2.02 16 37 H 0.15 4.29 7.37 -2.91 -0.02 4.27 16 38 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.08 2.74 3.93 -2.39 -0.01 2.73 16 41 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.03 1.12 6.15 -2.39 -0.01 1.10 16 44 H 0.37 18.89 6.89 -92.70 -0.64 18.25 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -66.89 369.76 4.81 -62.09 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.39 Total: 28.93 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 4.93 Total: 1.88 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.00 Total: -110.81 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.06 Total: -21.35 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 1.53 Total: -7.54 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -66.89 4.81 -62.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132894095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.344 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds