Wall clock time and date at job start Tue Mar 31 2020 22:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46053 * 2 1 4 4 C 1.53038 * 109.45315 * 240.02776 * 2 1 3 5 5 C 1.52761 * 109.38424 * 301.23018 * 4 2 1 6 6 N 1.46930 * 109.00649 * 305.58438 * 5 4 2 7 7 C 1.34779 * 120.63197 * 233.58329 * 6 5 4 8 8 O 1.21569 * 120.00074 * 173.89894 * 7 6 5 9 9 C 1.47697 * 119.99685 * 353.89620 * 7 6 5 10 10 C 1.39682 * 120.15798 * 306.25021 * 9 7 6 11 11 C 1.37848 * 119.92719 * 179.72365 * 10 9 7 12 12 C 1.38449 * 120.23855 * 0.53086 * 11 10 9 13 13 C 1.38387 * 120.31319 * 359.76419 * 12 11 10 14 14 F 1.35103 * 119.96314 * 179.97438 * 13 12 11 15 15 C 1.38538 * 120.07049 * 359.95752 * 13 12 11 16 16 F 1.35104 * 120.12164 * 180.02562 * 15 13 12 17 17 C 1.46922 * 118.73748 * 53.31080 * 6 5 4 18 18 C 1.53044 * 109.45664 * 119.97060 * 2 1 3 19 19 H 1.09007 * 109.49614 * 178.59812 * 18 2 1 20 20 C 1.53005 * 109.49753 * 298.68689 * 18 2 1 21 21 N 1.46492 * 109.47531 * 184.83815 * 20 18 2 22 22 C 1.36937 * 120.00453 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99461 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00240 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00310 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00193 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.47051 * 90.00258 * 26 24 22 28 28 H 1.48494 * 109.47298 * 210.00374 * 26 24 22 29 29 H 1.48505 * 109.47057 * 330.00277 * 26 24 22 30 30 H 1.08997 * 109.47314 * 300.03297 * 1 2 3 31 31 H 1.09000 * 109.46880 * 60.03585 * 1 2 3 32 32 H 1.09004 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49662 * 61.30061 * 4 2 1 34 34 H 1.09001 * 109.50055 * 181.36800 * 4 2 1 35 35 H 1.08998 * 109.51286 * 185.70564 * 5 4 2 36 36 H 1.08999 * 109.43286 * 65.42010 * 5 4 2 37 37 H 1.08004 * 120.03673 * 359.97075 * 10 9 7 38 38 H 1.08000 * 119.88230 * 180.27227 * 11 10 9 39 39 H 1.07991 * 119.84478 * 179.74361 * 12 11 10 40 40 H 1.09005 * 109.58823 * 66.42958 * 17 6 5 41 41 H 1.08999 * 109.58773 * 186.71128 * 17 6 5 42 42 H 1.09000 * 109.47563 * 304.84735 * 20 18 2 43 43 H 1.09005 * 109.46535 * 64.84300 * 20 18 2 44 44 H 0.97000 * 119.99700 * 0.02562 * 21 20 18 45 45 H 0.96993 * 120.00622 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 1.5040 -2.1515 -1.2641 6 7 1.8620 -2.8089 0.0001 7 6 2.5157 -3.9876 0.0002 8 8 2.9042 -4.4672 1.0475 9 6 2.7600 -4.6965 -1.2723 10 6 1.6970 -4.9800 -2.1330 11 6 1.9312 -5.6368 -3.3221 12 6 3.2154 -6.0268 -3.6620 13 6 4.2750 -5.7564 -2.8139 14 9 5.5252 -6.1406 -3.1524 15 6 4.0551 -5.0920 -1.6183 16 9 5.0889 -4.8270 -0.7898 17 6 1.4993 -2.1541 1.2643 18 6 2.0398 -0.7209 1.2501 19 1 3.1296 -0.7431 1.2383 20 6 1.5571 0.0195 2.4991 21 7 2.1394 -0.6022 3.6909 22 6 1.8476 -0.1066 4.9336 23 1 1.1879 0.7425 5.0351 24 6 2.3998 -0.6953 6.0629 25 7 2.1190 -0.2192 7.2574 26 14 3.5403 -2.1643 5.8875 27 1 4.9413 -1.6900 5.7540 28 1 3.4227 -3.0286 7.0892 29 1 3.1637 -2.9419 4.6797 30 1 -0.3634 0.5143 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6956 -0.1936 -2.1398 34 1 3.1294 -0.7427 -1.2386 35 1 1.9458 -2.6974 -2.0977 36 1 0.4195 -2.1316 -1.3714 37 1 0.6932 -4.6814 -1.8690 38 1 1.1094 -5.8518 -3.9890 39 1 3.3911 -6.5446 -4.5932 40 1 0.4143 -2.1345 1.3675 41 1 1.9357 -2.7032 2.0987 42 1 1.8669 1.0631 2.4454 43 1 0.4698 -0.0343 2.5557 44 1 2.7316 -1.3650 3.5998 45 1 2.5045 -0.6308 8.0465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133064370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:27 Heat of formation + Delta-G solvation = -81.262928 kcal Electronic energy + Delta-G solvation = -30124.544197 eV Core-core repulsion = 25778.448981 eV Total energy + Delta-G solvation = -4346.095215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.82582 -48.88925 -40.85542 -39.15473 -37.97030 -35.18872 -33.72506 -32.09970 -31.63009 -30.89528 -30.22413 -27.85741 -26.24010 -25.19428 -23.88000 -23.29404 -22.88992 -21.16769 -20.52269 -18.86165 -18.10944 -17.89448 -17.45830 -17.42043 -16.90177 -16.48344 -16.03205 -15.43705 -15.30942 -15.21184 -15.08558 -14.97763 -14.66311 -14.24725 -13.90726 -13.80791 -13.56664 -13.28255 -13.18748 -12.70767 -12.66767 -12.55974 -12.49793 -12.11782 -12.02234 -11.80389 -11.54455 -11.23994 -11.10840 -10.85769 -10.71546 -10.39285 -10.22833 -10.10796 -9.94714 -9.54026 -9.50711 -9.25077 -8.85452 -8.66711 -7.18460 -5.72334 -3.07963 0.19017 0.40502 2.31547 2.63327 2.94998 3.31432 3.47029 3.53684 3.56693 3.87253 3.93721 4.20037 4.25532 4.49618 4.55197 4.66484 4.70605 4.73664 4.97775 5.03564 5.11700 5.19050 5.20861 5.37169 5.39459 5.42698 5.49307 5.55756 5.57259 5.59839 5.64824 5.73018 5.76256 5.86170 5.94654 6.14062 6.16907 6.20240 6.23800 6.36526 6.43439 6.65721 6.76558 7.20308 7.94194 8.03056 8.46669 9.25778 9.98794 10.17739 11.45853 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.003520 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.649870 B = 7953.432342 C = 9397.644785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.077 0.923 4 C -0.130 4.130 5 C 0.101 3.899 6 N -0.600 5.600 7 C 0.556 3.444 8 O -0.512 6.512 9 C -0.128 4.128 10 C -0.071 4.071 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.064 3.936 14 F -0.125 7.125 15 C 0.112 3.888 16 F -0.112 7.112 17 C 0.117 3.883 18 C -0.107 4.107 19 H 0.074 0.926 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.935 5.935 26 Si 0.878 3.122 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.272 1.272 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 -8.448 -30.273 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.168 4.168 5 C -0.021 4.021 6 N -0.333 5.333 7 C 0.342 3.658 8 O -0.387 6.387 9 C -0.133 4.133 10 C -0.089 4.089 11 C -0.122 4.122 12 C -0.128 4.128 13 C 0.044 3.956 14 F -0.103 7.103 15 C 0.091 3.909 16 F -0.090 7.090 17 C -0.004 4.004 18 C -0.127 4.127 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.708 3.292 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.198 1.198 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.195 0.805 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.091 -8.565 -29.475 30.849 hybrid contribution 1.375 -1.055 0.102 1.736 sum -1.716 -9.620 -29.372 30.955 Atomic orbital electron populations 1.21997 0.94983 1.01979 1.02113 1.21064 0.96183 0.99546 0.93527 0.90467 1.21879 1.01306 0.94865 0.98753 1.21839 1.00662 0.93968 0.85652 1.48066 1.56816 1.20092 1.08301 1.17961 0.78569 0.81395 0.87906 1.90902 1.49282 1.66300 1.32263 1.19977 0.92360 1.03529 0.97404 1.21301 0.98561 0.96577 0.92490 1.21039 0.96517 0.97870 0.96812 1.21266 0.91443 1.00233 0.99873 1.17553 0.81350 1.02246 0.94460 1.91563 1.37746 1.89019 1.91971 1.17646 0.84674 0.99870 0.88707 1.91620 1.55880 1.91379 1.70089 1.21845 1.00374 0.93073 0.85108 1.21758 1.01006 0.94253 0.95678 0.90756 1.20659 0.96378 0.94966 0.84228 1.42790 1.57736 1.37236 1.02576 1.19026 1.24393 1.12170 0.81857 0.89214 1.24641 1.00145 0.98996 0.95108 1.69698 1.48344 1.43200 0.97021 0.86639 0.81561 0.83712 0.77282 1.21092 1.21664 1.19790 0.91537 0.92948 0.92485 0.90473 0.91518 0.90017 0.90582 0.83544 0.83416 0.83173 0.90506 0.88346 0.95186 0.95054 0.80504 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.11 37.16 0.30 -1.19 16 2 C -0.08 -0.92 2.71 -90.58 -0.25 -1.16 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.14 5.61 -26.83 -0.15 -1.29 16 5 C 0.10 0.86 5.07 -3.93 -0.02 0.84 16 6 N -0.60 -7.68 2.98 -174.20 -0.52 -8.20 16 7 C 0.56 8.30 6.89 -12.40 -0.09 8.21 16 8 O -0.51 -10.26 16.25 5.30 0.09 -10.18 16 9 C -0.13 -1.45 4.60 -104.92 -0.48 -1.93 16 10 C -0.07 -0.49 7.79 -39.19 -0.31 -0.79 16 11 C -0.10 -0.49 10.03 -39.65 -0.40 -0.89 16 12 C -0.11 -0.65 10.01 -39.45 -0.40 -1.04 16 13 C 0.06 0.62 7.30 -39.42 -0.29 0.33 16 14 F -0.12 -1.34 17.18 2.25 0.04 -1.30 16 15 C 0.11 1.37 7.28 -38.90 -0.28 1.09 16 16 F -0.11 -1.72 16.55 2.25 0.04 -1.69 16 17 C 0.12 1.80 5.06 -3.72 -0.02 1.78 16 18 C -0.11 -1.61 2.15 -90.50 -0.19 -1.81 16 19 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 20 C 0.17 3.11 5.19 -4.04 -0.02 3.09 16 21 N -0.76 -18.44 5.18 -59.91 -0.31 -18.75 16 22 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -30.11 13.97 55.49 0.78 -29.33 16 26 Si 0.88 23.53 27.74 -169.99 -4.71 18.82 16 27 H -0.28 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 29 H -0.27 -7.13 6.52 56.52 0.37 -6.76 16 30 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 4.99 -51.93 -0.26 0.28 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.57 5.40 -51.93 -0.28 0.29 16 36 H 0.08 0.51 6.70 -51.93 -0.35 0.16 16 37 H 0.15 0.74 7.76 -52.48 -0.41 0.33 16 38 H 0.15 0.22 8.06 -52.49 -0.42 -0.21 16 39 H 0.15 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.08 1.09 6.69 -51.93 -0.35 0.74 16 41 H 0.10 1.92 6.20 -51.93 -0.32 1.60 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 44 H 0.36 8.93 4.76 -40.82 -0.19 8.74 16 45 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -36.35 361.49 -7.82 -44.17 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.82 Total: 2.90 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.84 Total: -1.89 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.05 Total: -56.28 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -2.99 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.71 Total: 18.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.35 -7.82 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133064370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.092 kcal (2) G-P(sol) polarization free energy of solvation -36.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds