Wall clock time and date at job start Tue Mar 31 2020 22:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46333 * 2 1 4 4 C 1.53039 * 109.44478 * 119.96771 * 2 1 3 5 5 C 1.53196 * 109.31533 * 58.64826 * 4 2 1 6 6 N 1.46920 * 108.77456 * 54.63312 * 5 4 2 7 7 C 1.34783 * 120.63021 * 126.39361 * 6 5 4 8 8 O 1.21571 * 119.99697 * 175.80641 * 7 6 5 9 9 C 1.47695 * 119.99706 * 355.80821 * 7 6 5 10 10 C 1.39679 * 120.16063 * 54.18458 * 9 7 6 11 11 C 1.37839 * 119.93138 * 179.97438 * 10 9 7 12 12 C 1.38454 * 120.23677 * 0.02562 * 11 10 9 13 13 C 1.38383 * 120.31504 * 0.02562 * 12 11 10 14 14 F 1.35101 * 119.96319 * 179.97438 * 13 12 11 15 15 C 1.38548 * 120.06826 * 359.70787 * 13 12 11 16 16 F 1.35096 * 120.11625 * 180.27137 * 15 13 12 17 17 C 1.46927 * 118.74039 * 306.39132 * 6 5 4 18 18 C 1.53036 * 109.46096 * 240.02429 * 2 1 3 19 19 H 1.08991 * 109.50150 * 181.40792 * 18 2 1 20 20 C 1.53008 * 109.52290 * 61.32709 * 18 2 1 21 21 N 1.46498 * 109.47290 * 175.14621 * 20 18 2 22 22 C 1.36936 * 120.00287 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99451 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00307 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00196 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46849 * 89.99863 * 26 24 22 28 28 H 1.48496 * 109.46921 * 210.00058 * 26 24 22 29 29 H 1.48505 * 109.46988 * 329.99989 * 26 24 22 30 30 H 1.08997 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47463 * 299.97610 * 1 2 3 32 32 H 1.08999 * 109.46982 * 59.96695 * 1 2 3 33 33 H 1.09001 * 109.49595 * 178.59963 * 4 2 1 34 34 H 1.09000 * 109.49804 * 298.65824 * 4 2 1 35 35 H 1.09000 * 109.58529 * 174.42377 * 5 4 2 36 36 H 1.09001 * 109.58509 * 294.70389 * 5 4 2 37 37 H 1.08003 * 120.03561 * 359.95291 * 10 9 7 38 38 H 1.07999 * 119.88418 * 179.97438 * 11 10 9 39 39 H 1.07996 * 119.83967 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.58704 * 293.82299 * 17 6 5 41 41 H 1.08998 * 109.58496 * 173.39532 * 17 6 5 42 42 H 1.08994 * 109.47104 * 295.15012 * 20 18 2 43 43 H 1.09002 * 109.46440 * 55.14924 * 20 18 2 44 44 H 0.97008 * 119.99738 * 0.02562 * 21 20 18 45 45 H 0.97003 * 120.00425 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0394 -0.7208 1.2502 5 6 1.4988 -2.1542 1.2643 6 7 1.8618 -2.8090 0.0002 7 6 2.5151 -3.9879 0.0003 8 8 2.7425 -4.5569 -1.0497 9 6 2.9545 -4.5885 1.2761 10 6 2.0349 -4.7993 2.3061 11 6 2.4501 -5.3606 3.4946 12 6 3.7764 -5.7161 3.6719 13 6 4.6961 -5.5107 2.6586 14 9 5.9887 -5.8598 2.8395 15 6 4.2918 -4.9526 1.4567 16 9 5.1878 -4.7567 0.4648 17 6 1.4992 -2.1542 -1.2642 18 6 2.0398 -0.7209 -1.2499 19 1 3.1295 -0.7432 -1.2381 20 6 1.5578 0.0190 -2.4994 21 7 2.1408 -0.6030 -3.6908 22 6 1.8506 -0.1071 -4.9337 23 1 1.1915 0.7424 -5.0357 24 6 2.4035 -0.6961 -6.0625 25 7 3.2070 -1.7311 -5.9381 26 14 2.0070 -0.0201 -7.7581 27 1 3.0005 1.0226 -8.1200 28 1 2.0588 -1.1202 -8.7542 29 1 0.6463 0.5749 -7.7481 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 3.1292 -0.7431 1.2386 34 1 1.6959 -0.1931 2.1398 35 1 1.9372 -2.7018 2.0986 36 1 0.4141 -2.1345 1.3698 37 1 0.9997 -4.5225 2.1715 38 1 1.7385 -5.5229 4.2906 39 1 4.0946 -6.1558 4.6056 40 1 0.4142 -2.1345 -1.3674 41 1 1.9378 -2.7020 -2.0982 42 1 0.4707 -0.0346 -2.5566 43 1 1.8679 1.0626 -2.4458 44 1 2.7325 -1.3663 -3.5991 45 1 3.5937 -2.1425 -6.7268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133064377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:30 Heat of formation + Delta-G solvation = -82.478146 kcal Electronic energy + Delta-G solvation = -30020.139852 eV Core-core repulsion = 25673.991941 eV Total energy + Delta-G solvation = -4346.147911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.72152 -48.77977 -40.74811 -39.03236 -37.84226 -34.99087 -33.60655 -32.02460 -31.51358 -30.81830 -29.77038 -27.70665 -25.97238 -25.09565 -23.74365 -23.33679 -22.98269 -21.22452 -20.37925 -18.65977 -17.98797 -17.82654 -17.36107 -16.99882 -16.76677 -16.34533 -15.89626 -15.37685 -15.18492 -15.03796 -14.99545 -14.90517 -14.55695 -14.28744 -13.84410 -13.59533 -13.46639 -13.09778 -13.02981 -12.79848 -12.60155 -12.48572 -12.34659 -12.03023 -11.86294 -11.67911 -11.26047 -11.09103 -10.90796 -10.78571 -10.65775 -10.30262 -10.21150 -10.02100 -9.85045 -9.58943 -9.40436 -9.14247 -8.82134 -8.53226 -6.85905 -5.68433 -2.98552 0.29040 0.49266 2.44346 2.74581 3.07154 3.41973 3.48056 3.52371 3.55031 3.97703 4.03341 4.28071 4.34591 4.57528 4.60720 4.67868 4.81121 4.86098 5.09797 5.15500 5.21956 5.27561 5.29522 5.46123 5.50447 5.52078 5.60856 5.64389 5.65358 5.67810 5.79110 5.86736 5.92970 6.00265 6.13600 6.23721 6.30605 6.33043 6.34805 6.54023 6.60407 6.77651 6.89482 7.35078 7.75277 8.09332 8.48973 9.59883 10.17815 10.51719 11.53758 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.003127 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.376357 B = 8951.115051 C =10277.913322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.096 3.904 6 N -0.599 5.599 7 C 0.554 3.446 8 O -0.508 6.508 9 C -0.127 4.127 10 C -0.074 4.074 11 C -0.106 4.106 12 C -0.110 4.110 13 C 0.064 3.936 14 F -0.125 7.125 15 C 0.114 3.886 16 F -0.110 7.110 17 C 0.120 3.880 18 C -0.103 4.103 19 H 0.074 0.926 20 C 0.161 3.839 21 N -0.734 5.734 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 -4.585 27.289 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.026 4.026 6 N -0.332 5.332 7 C 0.340 3.660 8 O -0.382 6.382 9 C -0.131 4.131 10 C -0.093 4.093 11 C -0.124 4.124 12 C -0.129 4.129 13 C 0.044 3.956 14 F -0.103 7.103 15 C 0.093 3.907 16 F -0.088 7.088 17 C -0.001 4.001 18 C -0.123 4.123 19 H 0.092 0.908 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.374 4.374 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.170 -4.806 26.515 27.268 hybrid contribution 0.539 0.123 -1.064 1.199 sum -3.631 -4.684 25.450 26.131 Atomic orbital electron populations 1.21987 0.95158 1.01951 1.01878 1.21077 0.96049 0.99464 0.93826 0.90718 1.21949 1.01258 0.94931 0.98610 1.22028 1.00492 0.94057 0.86070 1.48058 1.56627 1.20248 1.08261 1.17932 0.78694 0.81515 0.87861 1.90922 1.54667 1.60727 1.31906 1.20005 0.92325 1.03910 0.96900 1.21301 0.99729 0.96842 0.91395 1.21020 0.95181 0.98334 0.97838 1.21245 0.92858 1.00259 0.98564 1.17555 0.80294 1.03533 0.94252 1.91560 1.33501 1.89822 1.95428 1.17638 0.86971 1.00663 0.85433 1.91632 1.65924 1.92278 1.58944 1.21828 1.00163 0.92989 0.85082 1.21704 1.00983 0.94250 0.95319 0.90774 1.20671 0.95989 0.94715 0.85294 1.42429 1.57092 1.37488 1.00818 1.19184 1.23486 1.10942 0.83760 0.91251 1.24760 1.00036 0.98270 0.97818 1.69674 1.35416 1.24023 1.28562 0.86213 0.77727 0.77757 0.84609 1.21789 1.21785 1.20805 0.92465 0.93102 0.91710 0.91509 0.90708 0.89732 0.90641 0.83549 0.83495 0.83244 0.90945 0.87772 0.95900 0.96136 0.78118 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.11 37.16 0.30 -1.30 16 2 C -0.09 -1.00 2.71 -90.58 -0.25 -1.25 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.23 5.62 -26.61 -0.15 -1.38 16 5 C 0.10 0.89 5.05 -3.71 -0.02 0.87 16 6 N -0.60 -8.26 2.97 -173.93 -0.52 -8.78 16 7 C 0.55 8.82 6.92 -12.39 -0.09 8.74 16 8 O -0.51 -10.71 16.28 5.30 0.09 -10.63 16 9 C -0.13 -1.54 4.89 -104.93 -0.51 -2.06 16 10 C -0.07 -0.56 7.42 -39.19 -0.29 -0.85 16 11 C -0.11 -0.56 10.03 -39.65 -0.40 -0.96 16 12 C -0.11 -0.73 10.01 -39.45 -0.40 -1.12 16 13 C 0.06 0.67 7.30 -39.41 -0.29 0.38 16 14 F -0.12 -1.44 17.18 2.25 0.04 -1.40 16 15 C 0.11 1.50 7.28 -38.90 -0.28 1.22 16 16 F -0.11 -1.83 16.57 2.25 0.04 -1.79 16 17 C 0.12 2.00 5.04 -3.71 -0.02 1.98 16 18 C -0.10 -1.66 2.15 -90.50 -0.19 -1.86 16 19 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 20 C 0.16 3.20 5.19 -4.04 -0.02 3.18 16 21 N -0.73 -19.01 5.38 -59.91 -0.32 -19.34 16 22 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -29.28 13.06 55.49 0.72 -28.55 16 26 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.06 0.59 4.98 -51.93 -0.26 0.33 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.76 6.58 -51.93 -0.34 0.42 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.63 4.73 -51.93 -0.25 0.38 16 36 H 0.08 0.57 6.70 -51.93 -0.35 0.22 16 37 H 0.15 0.81 7.36 -52.48 -0.39 0.42 16 38 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.07 1.13 6.69 -51.93 -0.35 0.78 16 41 H 0.10 2.21 6.23 -51.93 -0.32 1.88 16 42 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 10.75 6.89 -40.82 -0.28 10.47 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -35.58 363.52 -8.15 -43.73 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.81 Total: 5.25 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.85 Total: -1.96 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.11 Total: -56.67 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.58 -8.15 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133064377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.745 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds