Wall clock time and date at job start Tue Mar 31 2020 22:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46333 * 2 1 4 4 C 1.53039 * 109.44478 * 119.96771 * 2 1 3 5 5 C 1.53196 * 109.31533 * 58.64826 * 4 2 1 6 6 N 1.46920 * 108.77456 * 54.63312 * 5 4 2 7 7 C 1.34783 * 120.63021 * 126.39361 * 6 5 4 8 8 O 1.21571 * 119.99697 * 175.80641 * 7 6 5 9 9 C 1.47695 * 119.99706 * 355.80821 * 7 6 5 10 10 C 1.39679 * 120.16063 * 54.18458 * 9 7 6 11 11 C 1.37839 * 119.93138 * 179.97438 * 10 9 7 12 12 C 1.38454 * 120.23677 * 0.02562 * 11 10 9 13 13 C 1.38383 * 120.31504 * 0.02562 * 12 11 10 14 14 F 1.35101 * 119.96319 * 179.97438 * 13 12 11 15 15 C 1.38548 * 120.06826 * 359.70787 * 13 12 11 16 16 F 1.35096 * 120.11625 * 180.27137 * 15 13 12 17 17 C 1.46927 * 118.74039 * 306.39132 * 6 5 4 18 18 C 1.53036 * 109.46096 * 240.02429 * 2 1 3 19 19 H 1.08991 * 109.50150 * 181.40792 * 18 2 1 20 20 C 1.53008 * 109.52290 * 61.32709 * 18 2 1 21 21 N 1.46498 * 109.47290 * 175.14621 * 20 18 2 22 22 C 1.36936 * 120.00287 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99451 * 359.97438 * 22 21 20 24 24 C 1.38808 * 120.00307 * 179.97438 * 22 21 20 25 25 N 1.31616 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00196 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46849 * 89.99863 * 26 24 22 28 28 H 1.48496 * 109.46921 * 210.00058 * 26 24 22 29 29 H 1.48505 * 109.46988 * 329.99989 * 26 24 22 30 30 H 1.08997 * 109.47277 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47463 * 299.97610 * 1 2 3 32 32 H 1.08999 * 109.46982 * 59.96695 * 1 2 3 33 33 H 1.09001 * 109.49595 * 178.59963 * 4 2 1 34 34 H 1.09000 * 109.49804 * 298.65824 * 4 2 1 35 35 H 1.09000 * 109.58529 * 174.42377 * 5 4 2 36 36 H 1.09001 * 109.58509 * 294.70389 * 5 4 2 37 37 H 1.08003 * 120.03561 * 359.95291 * 10 9 7 38 38 H 1.07999 * 119.88418 * 179.97438 * 11 10 9 39 39 H 1.07996 * 119.83967 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.58704 * 293.82299 * 17 6 5 41 41 H 1.08998 * 109.58496 * 173.39532 * 17 6 5 42 42 H 1.08994 * 109.47104 * 295.15012 * 20 18 2 43 43 H 1.09002 * 109.46440 * 55.14924 * 20 18 2 44 44 H 0.97008 * 119.99738 * 0.02562 * 21 20 18 45 45 H 0.97003 * 120.00425 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0394 -0.7208 1.2502 5 6 1.4988 -2.1542 1.2643 6 7 1.8618 -2.8090 0.0002 7 6 2.5151 -3.9879 0.0003 8 8 2.7425 -4.5569 -1.0497 9 6 2.9545 -4.5885 1.2761 10 6 2.0349 -4.7993 2.3061 11 6 2.4501 -5.3606 3.4946 12 6 3.7764 -5.7161 3.6719 13 6 4.6961 -5.5107 2.6586 14 9 5.9887 -5.8598 2.8395 15 6 4.2918 -4.9526 1.4567 16 9 5.1878 -4.7567 0.4648 17 6 1.4992 -2.1542 -1.2642 18 6 2.0398 -0.7209 -1.2499 19 1 3.1295 -0.7432 -1.2381 20 6 1.5578 0.0190 -2.4994 21 7 2.1408 -0.6030 -3.6908 22 6 1.8506 -0.1071 -4.9337 23 1 1.1915 0.7424 -5.0357 24 6 2.4035 -0.6961 -6.0625 25 7 3.2070 -1.7311 -5.9381 26 14 2.0070 -0.0201 -7.7581 27 1 3.0005 1.0226 -8.1200 28 1 2.0588 -1.1202 -8.7542 29 1 0.6463 0.5749 -7.7481 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 3.1292 -0.7431 1.2386 34 1 1.6959 -0.1931 2.1398 35 1 1.9372 -2.7018 2.0986 36 1 0.4141 -2.1345 1.3698 37 1 0.9997 -4.5225 2.1715 38 1 1.7385 -5.5229 4.2906 39 1 4.0946 -6.1558 4.6056 40 1 0.4142 -2.1345 -1.3674 41 1 1.9378 -2.7020 -2.0982 42 1 0.4707 -0.0346 -2.5566 43 1 1.8679 1.0626 -2.4458 44 1 2.7325 -1.3663 -3.5991 45 1 3.5937 -2.1425 -6.7268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133064377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:29 Heat of formation + Delta-G solvation = -106.837346 kcal Electronic energy + Delta-G solvation = -30021.196146 eV Core-core repulsion = 25673.991941 eV Total energy + Delta-G solvation = -4347.204205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.65090 -49.73291 -41.82763 -39.92663 -38.98234 -36.68438 -35.01516 -33.53526 -32.53550 -31.58690 -31.26686 -28.74106 -27.46746 -26.24215 -24.97827 -24.61375 -23.85677 -22.60677 -21.47998 -19.84345 -19.03109 -18.91748 -18.65854 -18.25246 -17.77378 -17.33524 -16.95855 -16.79157 -16.23087 -16.20745 -16.10131 -15.81231 -15.72416 -15.49471 -15.33822 -15.06741 -14.57657 -14.50440 -14.20172 -13.98145 -13.81785 -13.37916 -13.12854 -13.06545 -12.88671 -12.81859 -12.74466 -12.62192 -12.45778 -12.17267 -12.03318 -11.92416 -11.75618 -11.43987 -11.25937 -11.05250 -10.95272 -10.19244 -9.87614 -9.68577 -9.03358 -7.96399 -5.27545 -0.43564 -0.20445 1.33383 1.43008 1.46584 1.55132 1.78135 2.28323 2.53608 2.66210 3.09887 3.28593 3.36509 3.58703 3.68462 3.73088 3.78526 3.83078 4.03224 4.09007 4.13761 4.26053 4.35932 4.45263 4.50890 4.55440 4.67527 4.70335 4.75389 4.80890 4.84649 4.90132 4.98422 5.01411 5.08772 5.09254 5.16945 5.24392 5.30013 5.38997 5.43933 5.46820 5.61029 5.62135 6.23088 6.24048 6.92285 7.28644 8.05303 8.27252 9.27183 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.003127 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.376357 B = 8951.115051 C =10277.913322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.089 3.911 6 N -0.592 5.592 7 C 0.545 3.455 8 O -0.582 6.582 9 C -0.145 4.145 10 C -0.062 4.062 11 C -0.074 4.074 12 C -0.088 4.088 13 C 0.049 3.951 14 F -0.138 7.138 15 C 0.067 3.933 16 F -0.149 7.149 17 C 0.129 3.871 18 C -0.092 4.092 19 H 0.041 0.959 20 C 0.160 3.840 21 N -0.750 5.750 22 C -0.245 4.245 23 H 0.082 0.918 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.263 1.263 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.177 0.823 38 H 0.203 0.797 39 H 0.189 0.811 40 H 0.085 0.915 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.024 0.976 44 H 0.368 0.632 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -3.611 32.135 33.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.162 4.162 5 C -0.032 4.032 6 N -0.323 5.323 7 C 0.334 3.666 8 O -0.462 6.462 9 C -0.150 4.150 10 C -0.080 4.080 11 C -0.091 4.091 12 C -0.107 4.107 13 C 0.029 3.971 14 F -0.117 7.117 15 C 0.046 3.954 16 F -0.127 7.127 17 C 0.006 3.994 18 C -0.111 4.111 19 H 0.060 0.940 20 C 0.034 3.966 21 N -0.393 5.393 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.807 3.193 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.188 1.188 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.194 0.806 38 H 0.220 0.780 39 H 0.206 0.794 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.199 0.801 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.442 -3.759 31.444 32.530 hybrid contribution 1.485 -0.161 -2.417 2.841 sum -5.957 -3.920 29.027 29.890 Atomic orbital electron populations 1.21960 0.93359 1.02416 1.02785 1.21076 0.97409 0.99182 0.92195 0.90307 1.21966 1.00306 0.95125 0.98841 1.22497 1.02686 0.93737 0.84235 1.48141 1.55615 1.19600 1.08968 1.18681 0.77725 0.81623 0.88606 1.90872 1.57460 1.62943 1.34934 1.19802 0.92824 1.05925 0.96399 1.21724 0.99968 0.95708 0.90601 1.21643 0.95213 0.94656 0.97638 1.21797 0.92547 0.98005 0.98300 1.17891 0.80605 1.04216 0.94356 1.91521 1.34691 1.90043 1.95423 1.18203 0.87303 1.03754 0.86122 1.91518 1.67305 1.93050 1.60875 1.21462 1.00164 0.92589 0.85142 1.21570 0.98987 0.94277 0.96316 0.93995 1.20876 0.96211 0.94718 0.84816 1.42726 1.57120 1.37256 1.02178 1.19686 1.22489 1.10567 0.84910 0.90054 1.25705 1.00578 0.98944 1.02148 1.69886 1.37392 1.26036 1.29184 0.85063 0.78307 0.76762 0.79168 1.21298 1.22457 1.18762 0.92168 0.89646 0.93391 0.93253 0.86310 0.87115 0.87326 0.80609 0.77953 0.79413 0.89692 0.93702 0.94654 0.95847 0.80055 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.11 71.98 0.58 -2.01 16 2 C -0.08 -1.72 2.71 -10.77 -0.03 -1.75 16 3 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.12 -1.97 5.62 30.67 0.17 -1.80 16 5 C 0.09 1.35 5.05 86.37 0.44 1.79 16 6 N -0.59 -16.68 2.97 -822.47 -2.44 -19.13 16 7 C 0.55 18.63 6.92 86.74 0.60 19.23 16 8 O -0.58 -27.63 16.28 -3.94 -0.06 -27.70 16 9 C -0.15 -3.53 4.89 -20.06 -0.10 -3.63 16 10 C -0.06 -0.68 7.42 22.52 0.17 -0.51 16 11 C -0.07 -0.32 10.03 22.23 0.22 -0.10 16 12 C -0.09 -0.76 10.01 22.36 0.22 -0.54 16 13 C 0.05 0.99 7.30 22.38 0.16 1.16 16 14 F -0.14 -3.24 17.18 44.97 0.77 -2.47 16 15 C 0.07 1.88 7.28 22.71 0.17 2.04 16 16 F -0.15 -5.65 16.57 44.97 0.75 -4.91 16 17 C 0.13 4.56 5.04 86.36 0.44 5.00 16 18 C -0.09 -3.10 2.15 -10.71 -0.02 -3.12 16 19 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 20 C 0.16 6.58 5.19 86.38 0.45 7.03 16 21 N -0.75 -41.18 5.38 -343.45 -1.85 -43.02 16 22 C -0.24 -14.44 9.99 84.03 0.84 -13.60 16 23 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 24 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 25 N -0.97 -64.96 13.06 21.65 0.28 -64.68 16 26 Si 0.98 48.64 29.55 68.60 2.03 50.67 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 29 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 30 H 0.06 1.02 4.98 -2.39 -0.01 1.01 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.01 6.58 -2.39 -0.02 1.00 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.15 4.73 -2.39 -0.01 1.14 16 36 H 0.11 1.04 6.70 -2.39 -0.02 1.02 16 37 H 0.18 0.92 7.36 -2.91 -0.02 0.90 16 38 H 0.20 -1.13 8.06 -2.91 -0.02 -1.16 16 39 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.09 2.73 6.69 -2.39 -0.02 2.71 16 41 H 0.04 2.14 6.23 -2.39 -0.01 2.12 16 42 H 0.04 1.39 6.73 -2.39 -0.02 1.37 16 43 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.37 22.43 6.89 -92.70 -0.64 21.80 16 45 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -91.03 363.52 4.65 -86.38 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.40 Total: 20.23 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 4.78 Total: 4.63 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -4.01 Total: -126.83 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 1.52 Total: -7.38 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -91.03 4.65 -86.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133064377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.462 kcal (2) G-P(sol) polarization free energy of solvation -91.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds