Wall clock time and date at job start Tue Mar 31 2020 22:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.44706 * 2 1 4 4 C 1.53042 * 109.45916 * 119.96190 * 2 1 3 5 5 C 1.53191 * 109.31360 * 181.38447 * 4 2 1 6 6 N 1.46921 * 108.77810 * 305.37118 * 5 4 2 7 7 C 1.34781 * 120.62542 * 233.60845 * 6 5 4 8 8 O 1.21571 * 119.99487 * 174.94336 * 7 6 5 9 9 C 1.47694 * 120.00422 * 354.94269 * 7 6 5 10 10 C 1.39687 * 120.15504 * 321.87062 * 9 7 6 11 11 C 1.37839 * 119.92753 * 180.02562 * 10 9 7 12 12 C 1.38452 * 120.23812 * 359.97336 * 11 10 9 13 13 C 1.38373 * 120.31799 * 0.02562 * 12 11 10 14 14 F 1.35100 * 119.96651 * 180.02562 * 13 12 11 15 15 C 1.38549 * 120.06839 * 359.72549 * 13 12 11 16 16 F 1.35093 * 120.12252 * 180.28058 * 15 13 12 17 17 C 1.46924 * 118.74116 * 53.60179 * 6 5 4 18 18 C 1.53041 * 109.46314 * 240.03045 * 2 1 3 19 19 H 1.08996 * 109.49564 * 298.56801 * 18 2 1 20 20 C 1.52997 * 109.52223 * 58.64746 * 18 2 1 21 21 N 1.46497 * 109.47068 * 184.85439 * 20 18 2 22 22 C 1.36941 * 119.99941 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00188 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99991 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00029 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99938 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47337 * 59.99923 * 26 24 22 28 28 H 1.48502 * 109.47235 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47015 * 299.99707 * 26 24 22 30 30 H 1.09005 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47548 * 299.96920 * 1 2 3 32 32 H 1.08998 * 109.46946 * 59.97093 * 1 2 3 33 33 H 1.09001 * 109.50097 * 301.34355 * 4 2 1 34 34 H 1.09001 * 109.49669 * 61.43543 * 4 2 1 35 35 H 1.09000 * 109.58222 * 65.15466 * 5 4 2 36 36 H 1.09006 * 109.58641 * 185.43486 * 5 4 2 37 37 H 1.08004 * 120.03661 * 0.02562 * 10 9 7 38 38 H 1.08000 * 119.88410 * 179.97438 * 11 10 9 39 39 H 1.08005 * 119.84138 * 180.02562 * 12 11 10 40 40 H 1.09000 * 109.58368 * 186.60291 * 17 6 5 41 41 H 1.09003 * 109.58172 * 66.18489 * 17 6 5 42 42 H 1.09004 * 109.47368 * 304.85496 * 20 18 2 43 43 H 1.09004 * 109.46947 * 64.85439 * 20 18 2 44 44 H 0.96993 * 120.00120 * 359.97438 * 21 20 18 45 45 H 0.96994 * 120.00246 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2487 0.0002 7 6 4.9618 -2.2575 0.0003 8 8 5.2955 -2.7739 -1.0484 9 6 5.5358 -2.7354 1.2744 10 6 5.8502 -1.8262 2.2872 11 6 6.3862 -2.2773 3.4743 12 6 6.6141 -3.6293 3.6672 13 6 6.3064 -4.5387 2.6707 14 9 6.5312 -5.8563 2.8667 15 6 5.7623 -4.1000 1.4744 16 9 5.4563 -4.9874 0.5029 17 6 3.5714 -0.6886 -1.2641 18 6 2.0399 -0.7208 -1.2500 19 1 1.6979 -1.7556 -1.2382 20 6 1.5029 -0.0197 -2.4994 21 7 1.8951 -0.7766 -3.6907 22 6 1.5242 -0.3375 -4.9337 23 1 0.9421 0.5665 -5.0357 24 6 1.8955 -1.0550 -6.0626 25 7 2.6044 -2.1569 -5.9383 26 14 1.3901 -0.4557 -7.7581 27 1 1.9527 0.8984 -7.9926 28 1 1.9067 -1.3921 -8.7884 29 1 -0.0915 -0.3975 -7.8413 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6571 -0.2207 2.1399 34 1 1.6978 -1.7556 1.2384 35 1 3.9142 0.3410 1.3674 36 1 3.9415 -1.2824 2.1001 37 1 5.6733 -0.7709 2.1404 38 1 6.6294 -1.5737 4.2567 39 1 7.0340 -3.9758 4.6000 40 1 3.9418 -1.2845 -2.0982 41 1 3.9143 0.3409 -1.3672 42 1 0.4155 0.0358 -2.4458 43 1 1.9157 0.9875 -2.5565 44 1 2.4176 -1.5886 -3.5992 45 1 2.8642 -2.6581 -6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133064380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:32 Heat of formation + Delta-G solvation = -105.206396 kcal Electronic energy + Delta-G solvation = -29824.110461 eV Core-core repulsion = 25476.976979 eV Total energy + Delta-G solvation = -4347.133482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.62955 -49.71322 -41.76621 -39.78873 -38.93885 -36.67809 -35.19779 -33.56999 -32.58357 -31.61913 -31.19387 -29.29957 -27.41863 -25.72973 -25.01647 -23.94465 -23.76699 -22.59995 -21.50571 -20.58165 -19.22730 -18.97805 -18.67293 -18.25492 -17.67318 -17.27441 -16.93029 -16.76390 -16.27928 -16.09294 -15.99351 -15.61461 -15.52454 -15.45317 -15.27912 -15.10341 -14.48650 -14.30136 -14.23272 -14.12129 -13.92559 -13.32867 -13.14929 -13.04376 -12.95359 -12.81998 -12.72874 -12.61872 -12.54364 -12.21080 -12.02286 -11.91964 -11.78463 -11.39156 -11.21178 -11.01814 -10.90162 -10.21890 -9.85016 -9.71686 -9.01601 -7.95427 -5.26441 -0.49941 -0.20050 1.43154 1.45389 1.48014 1.54329 1.77028 2.32980 2.54276 2.66684 3.11761 3.29186 3.37173 3.58395 3.68919 3.72423 3.79316 3.83949 3.99675 4.09766 4.15781 4.26736 4.37680 4.45693 4.55074 4.58384 4.68976 4.73842 4.78486 4.81766 4.85082 4.94385 4.95527 5.01333 5.07145 5.08428 5.13040 5.23370 5.27262 5.41999 5.46756 5.49635 5.58297 5.61717 6.24222 6.25699 6.95698 7.29490 8.06876 8.28527 9.27916 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.003053 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.193291 B = 9170.299885 C =10564.457179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.094 0.906 4 C -0.125 4.125 5 C 0.084 3.916 6 N -0.594 5.594 7 C 0.542 3.458 8 O -0.583 6.583 9 C -0.152 4.152 10 C -0.061 4.061 11 C -0.078 4.078 12 C -0.085 4.085 13 C 0.045 3.955 14 F -0.138 7.138 15 C 0.073 3.927 16 F -0.146 7.146 17 C 0.127 3.873 18 C -0.090 4.090 19 H 0.040 0.960 20 C 0.157 3.843 21 N -0.750 5.750 22 C -0.246 4.246 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.273 1.273 28 H -0.299 1.299 29 H -0.274 1.274 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.120 0.880 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.181 0.819 38 H 0.205 0.795 39 H 0.189 0.811 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.368 0.632 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 6.688 32.142 33.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.112 0.888 4 C -0.162 4.162 5 C -0.036 4.036 6 N -0.325 5.325 7 C 0.331 3.669 8 O -0.464 6.464 9 C -0.156 4.156 10 C -0.079 4.079 11 C -0.095 4.095 12 C -0.103 4.103 13 C 0.025 3.975 14 F -0.117 7.117 15 C 0.052 3.948 16 F -0.125 7.125 17 C 0.004 3.996 18 C -0.110 4.110 19 H 0.059 0.941 20 C 0.031 3.969 21 N -0.393 5.393 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.807 3.193 27 H -0.199 1.199 28 H -0.225 1.225 29 H -0.200 1.200 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.198 0.802 38 H 0.222 0.778 39 H 0.206 0.794 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.199 0.801 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.562 6.477 31.449 32.587 hybrid contribution -0.127 -1.528 -2.418 2.863 sum 5.434 4.949 29.031 29.947 Atomic orbital electron populations 1.21864 0.94497 1.01392 1.02575 1.21111 0.96331 0.99964 0.92236 0.88778 1.22020 0.94565 1.00847 0.98818 1.22698 0.95057 1.01453 0.84375 1.48115 1.41321 1.34100 1.08987 1.18695 0.79840 0.79736 0.88630 1.90882 1.62519 1.57795 1.35158 1.19842 1.07085 0.92118 0.96576 1.21898 0.94486 1.00705 0.90795 1.21669 0.95347 0.94886 0.97617 1.21821 0.97317 0.92821 0.98338 1.17910 1.05427 0.79555 0.94590 1.91519 1.92745 1.32288 1.95161 1.18266 1.02739 0.87214 0.86610 1.91523 1.90815 1.67852 1.62269 1.21476 0.94159 0.98668 0.85296 1.21583 0.93872 0.99241 0.96262 0.94104 1.20933 0.97155 0.94009 0.84817 1.42715 1.65064 1.29318 1.02161 1.19656 1.26799 1.06325 0.84950 0.90065 1.25704 1.01598 0.97938 1.02140 1.69882 1.44304 1.19091 1.29226 0.85137 0.77994 0.77194 0.78983 1.19928 1.22523 1.20033 0.94177 0.89813 0.93212 0.86177 0.93389 0.87003 0.86626 0.80174 0.77847 0.79390 0.93546 0.89668 0.94931 0.95306 0.80064 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.81 71.98 0.63 -2.36 16 2 C -0.08 -1.63 2.23 -10.77 -0.02 -1.65 16 3 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.12 -1.88 5.36 30.67 0.16 -1.71 16 5 C 0.08 1.18 4.83 86.36 0.42 1.60 16 6 N -0.59 -16.43 2.97 -822.50 -2.44 -18.88 16 7 C 0.54 18.55 7.22 86.74 0.63 19.17 16 8 O -0.58 -28.00 15.62 -3.94 -0.06 -28.06 16 9 C -0.15 -3.68 5.22 -20.06 -0.10 -3.79 16 10 C -0.06 -0.64 7.35 22.53 0.17 -0.48 16 11 C -0.08 -0.31 10.03 22.23 0.22 -0.08 16 12 C -0.08 -0.71 10.01 22.35 0.22 -0.49 16 13 C 0.05 0.91 7.30 22.38 0.16 1.07 16 14 F -0.14 -3.24 17.18 44.97 0.77 -2.47 16 15 C 0.07 2.04 7.25 22.71 0.16 2.21 16 16 F -0.15 -5.59 16.12 44.97 0.72 -4.86 16 17 C 0.13 4.43 5.53 86.36 0.48 4.90 16 18 C -0.09 -2.99 1.92 -10.72 -0.02 -3.01 16 19 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 20 C 0.16 6.40 5.41 86.38 0.47 6.87 16 21 N -0.75 -41.03 5.38 -343.45 -1.85 -42.88 16 22 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 23 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 24 C -0.08 -5.02 5.50 84.86 0.47 -4.56 16 25 N -0.97 -65.00 13.06 21.65 0.28 -64.72 16 26 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 27 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 28 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 29 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 30 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.18 6.30 -2.39 -0.02 1.16 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.12 1.08 4.56 -2.38 -0.01 1.06 16 37 H 0.18 0.81 6.31 -2.91 -0.02 0.80 16 38 H 0.20 -1.24 8.06 -2.91 -0.02 -1.27 16 39 H 0.19 0.21 8.06 -2.91 -0.02 0.18 16 40 H 0.05 2.20 6.19 -2.39 -0.01 2.18 16 41 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.03 1.31 6.15 -2.38 -0.01 1.30 16 43 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.37 22.42 6.89 -92.71 -0.64 21.78 16 45 H 0.25 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -92.02 367.04 4.73 -87.28 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.39 Total: 19.90 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.88 Total: 4.07 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -4.01 Total: -126.47 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 1.50 Total: -7.33 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -92.02 4.73 -87.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133064380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.924 kcal (2) G-P(sol) polarization free energy of solvation -92.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds