Wall clock time and date at job start Tue Mar 31 2020 22:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.44630 * 2 1 4 4 C 1.53032 * 109.46075 * 240.03400 * 2 1 3 5 5 C 1.53189 * 109.34076 * 178.63219 * 4 2 1 6 6 N 1.46927 * 108.77705 * 54.61854 * 5 4 2 7 7 C 1.34779 * 120.63333 * 126.41409 * 6 5 4 8 8 O 1.21564 * 119.99665 * 175.84569 * 7 6 5 9 9 C 1.47696 * 119.99889 * 355.84972 * 7 6 5 10 10 C 1.39686 * 120.15504 * 54.19026 * 9 7 6 11 11 C 1.37844 * 119.92202 * 179.71491 * 10 9 7 12 12 C 1.38453 * 120.24176 * 0.54705 * 11 10 9 13 13 C 1.38379 * 120.31316 * 359.75467 * 12 11 10 14 14 F 1.35106 * 119.96467 * 179.97438 * 13 12 11 15 15 C 1.38545 * 120.07483 * 359.95748 * 13 12 11 16 16 F 1.35094 * 120.12687 * 179.97438 * 15 13 12 17 17 C 1.46931 * 118.73389 * 306.39437 * 6 5 4 18 18 C 1.53034 * 109.48316 * 119.94901 * 2 1 3 19 19 H 1.09000 * 109.47294 * 61.40180 * 18 2 1 20 20 C 1.52999 * 109.52481 * 301.33638 * 18 2 1 21 21 N 1.46503 * 109.47361 * 175.11405 * 20 18 2 22 22 C 1.36936 * 120.00165 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99976 * 0.02562 * 22 21 20 24 24 C 1.38807 * 119.99942 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00065 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99925 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47315 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47426 * 119.99943 * 26 24 22 29 29 H 1.48499 * 109.46963 * 239.99876 * 26 24 22 30 30 H 1.08993 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46978 * 299.96886 * 1 2 3 32 32 H 1.09004 * 109.46723 * 59.96651 * 1 2 3 33 33 H 1.09004 * 109.49902 * 58.66221 * 4 2 1 34 34 H 1.09000 * 109.50017 * 298.60131 * 4 2 1 35 35 H 1.09002 * 109.59032 * 174.40347 * 5 4 2 36 36 H 1.09002 * 109.59074 * 294.83254 * 5 4 2 37 37 H 1.07994 * 120.03668 * 359.97438 * 10 9 7 38 38 H 1.08002 * 119.87879 * 180.29659 * 11 10 9 39 39 H 1.07995 * 119.84220 * 179.73692 * 12 11 10 40 40 H 1.09005 * 109.58139 * 173.39689 * 17 6 5 41 41 H 1.09001 * 109.58694 * 293.81439 * 17 6 5 42 42 H 1.08999 * 109.47489 * 295.11599 * 20 18 2 43 43 H 1.08992 * 109.47397 * 55.11415 * 20 18 2 44 44 H 0.96998 * 119.99805 * 0.02562 * 21 20 18 45 45 H 0.97005 * 119.99760 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2500 5 6 3.5714 -0.6893 -1.2646 6 7 4.0680 -1.2495 -0.0004 7 6 4.9617 -2.2584 -0.0003 8 8 5.4220 -2.6626 1.0497 9 6 5.3820 -2.8726 -1.2761 10 6 5.8879 -2.0755 -2.3056 11 6 6.2842 -2.6545 -3.4921 12 6 6.1723 -4.0228 -3.6719 13 6 5.6667 -4.8210 -2.6609 14 9 5.5600 -6.1553 -2.8441 15 6 5.2700 -4.2535 -1.4609 16 9 4.7757 -5.0317 -0.4734 17 6 3.5720 -0.6887 1.2639 18 6 2.0405 -0.7202 1.2501 19 1 1.6979 -1.7550 1.2386 20 6 1.5040 -0.0186 2.4994 21 7 1.8962 -0.7754 3.6909 22 6 1.5266 -0.3353 4.9339 23 1 0.9457 0.5695 5.0358 24 6 1.8987 -1.0521 6.0629 25 7 2.6070 -2.1544 5.9387 26 14 1.3939 -0.4522 7.7584 27 1 0.6091 0.8015 7.6266 28 1 0.5641 -1.4886 8.4235 29 1 2.6080 -0.1922 8.5731 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6573 -0.2207 -2.1398 34 1 1.6974 -1.7554 -1.2386 35 1 3.9413 -1.2856 -2.0987 36 1 3.9149 0.3400 -1.3679 37 1 5.9723 -1.0074 -2.1706 38 1 6.6797 -2.0381 -4.2859 39 1 6.4807 -4.4691 -4.6057 40 1 3.9423 -1.2847 2.0981 41 1 3.9155 0.3406 1.3668 42 1 1.9173 0.9884 2.5563 43 1 0.4169 0.0374 2.4461 44 1 2.4182 -1.5877 3.5994 45 1 2.8667 -2.6555 6.7277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133064383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:36 Heat of formation + Delta-G solvation = -85.687070 kcal Electronic energy + Delta-G solvation = -29883.831222 eV Core-core repulsion = 25537.544161 eV Total energy + Delta-G solvation = -4346.287060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.72367 -48.78256 -40.66606 -38.92445 -37.78036 -35.03703 -33.75082 -32.08738 -31.51901 -30.82027 -29.76997 -28.22923 -25.83726 -24.68934 -23.37485 -23.01533 -22.97362 -21.25302 -20.35400 -19.46054 -18.19434 -17.80363 -17.42365 -17.02376 -16.75103 -16.31531 -15.91331 -15.33888 -15.18648 -15.02752 -14.85203 -14.59095 -14.42837 -14.19322 -13.89733 -13.59752 -13.45743 -13.17710 -13.02714 -12.72432 -12.59660 -12.50671 -12.35035 -12.04475 -11.86667 -11.74099 -11.50742 -10.99934 -10.88841 -10.80840 -10.63427 -10.29398 -10.19248 -10.01099 -9.83236 -9.59109 -9.40553 -9.14429 -8.83182 -8.58282 -6.85490 -5.68645 -2.98628 0.28861 0.49007 2.44048 2.74161 3.06532 3.41660 3.47813 3.52481 3.55549 3.97408 4.03025 4.27928 4.34218 4.57699 4.59910 4.67514 4.80185 4.84803 5.06934 5.14181 5.22759 5.27856 5.32601 5.45966 5.50429 5.60530 5.62291 5.65182 5.66665 5.69373 5.78739 5.89374 5.93007 6.01006 6.15561 6.22030 6.23702 6.31597 6.43529 6.53800 6.58024 6.81012 6.89264 7.34217 7.75738 8.08752 8.48784 9.59813 10.17804 10.51677 11.53605 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014119 B = 0.003090 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.638123 B = 9059.163257 C =10252.738072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.097 3.903 6 N -0.600 5.600 7 C 0.555 3.445 8 O -0.507 6.507 9 C -0.127 4.127 10 C -0.074 4.074 11 C -0.105 4.105 12 C -0.110 4.110 13 C 0.064 3.936 14 F -0.125 7.125 15 C 0.114 3.886 16 F -0.110 7.110 17 C 0.121 3.879 18 C -0.103 4.103 19 H 0.074 0.926 20 C 0.159 3.841 21 N -0.734 5.734 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.019 0.981 43 H 0.028 0.972 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 2.140 -27.320 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.167 4.167 5 C -0.025 4.025 6 N -0.333 5.333 7 C 0.340 3.660 8 O -0.382 6.382 9 C -0.131 4.131 10 C -0.093 4.093 11 C -0.124 4.124 12 C -0.129 4.129 13 C 0.044 3.956 14 F -0.103 7.103 15 C 0.093 3.907 16 F -0.088 7.088 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.045 0.955 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.314 1.940 -26.551 27.147 hybrid contribution -0.234 -0.451 1.069 1.183 sum 5.080 1.488 -25.482 26.026 Atomic orbital electron populations 1.21880 0.94875 1.02010 1.01745 1.21092 0.96070 0.99345 0.93828 0.90971 1.21990 0.94415 1.01744 0.98598 1.22014 0.95188 0.99235 0.86105 1.48082 1.42317 1.34632 1.08284 1.17931 0.80074 0.80099 0.87871 1.90920 1.53992 1.61388 1.31900 1.20008 1.04534 0.91735 0.96859 1.21306 0.96076 1.00514 0.91390 1.21022 0.99598 0.93872 0.97863 1.21244 0.99079 0.94044 0.98562 1.17554 1.05083 0.78679 0.94298 1.91562 1.94061 1.29297 1.95390 1.17637 0.99407 0.88121 0.85557 1.91631 1.84271 1.73605 1.59280 1.21816 0.93828 0.99270 0.85137 1.21730 0.94270 1.00909 0.95311 0.90725 1.20713 0.96859 0.94016 0.85275 1.42433 1.65311 1.29262 1.00818 1.19229 1.27896 1.06408 0.83740 0.91196 1.24762 1.00819 0.97526 0.97818 1.69688 1.42242 1.17317 1.28413 0.86145 0.77620 0.77691 0.84885 1.20614 1.21920 1.21892 0.92767 0.91568 0.93196 0.90703 0.91467 0.89611 0.90872 0.83531 0.83490 0.83238 0.87649 0.91190 0.96360 0.95469 0.78130 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.82 37.16 0.33 -1.36 16 2 C -0.08 -0.99 2.23 -90.58 -0.20 -1.20 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.23 5.36 -26.62 -0.14 -1.38 16 5 C 0.10 0.90 5.53 -3.71 -0.02 0.88 16 6 N -0.60 -8.30 2.97 -173.93 -0.52 -8.82 16 7 C 0.55 8.84 6.91 -12.40 -0.09 8.75 16 8 O -0.51 -10.72 16.31 5.31 0.09 -10.63 16 9 C -0.13 -1.54 4.89 -104.92 -0.51 -2.05 16 10 C -0.07 -0.56 7.42 -39.19 -0.29 -0.85 16 11 C -0.11 -0.56 10.03 -39.65 -0.40 -0.96 16 12 C -0.11 -0.73 10.01 -39.45 -0.40 -1.12 16 13 C 0.06 0.67 7.30 -39.42 -0.29 0.38 16 14 F -0.12 -1.43 17.18 2.25 0.04 -1.40 16 15 C 0.11 1.50 7.28 -38.90 -0.28 1.22 16 16 F -0.11 -1.82 16.58 2.25 0.04 -1.79 16 17 C 0.12 2.01 5.51 -3.71 -0.02 1.99 16 18 C -0.10 -1.65 1.92 -90.50 -0.17 -1.83 16 19 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 20 C 0.16 3.16 5.41 -4.04 -0.02 3.14 16 21 N -0.73 -18.98 5.38 -59.91 -0.32 -19.30 16 22 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.26 13.06 55.49 0.72 -28.53 16 26 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.63 4.73 -51.93 -0.25 0.39 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.15 0.80 7.36 -52.49 -0.39 0.42 16 38 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.11 2.23 6.23 -51.93 -0.32 1.91 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 44 H 0.38 10.73 6.89 -40.82 -0.28 10.45 16 45 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -35.60 369.64 -8.24 -43.84 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.08 Total: 5.03 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.75 Total: -1.93 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.11 Total: -56.66 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.60 -8.24 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133064383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.849 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds