Wall clock time and date at job start Tue Mar 31 2020 22:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46508 * 2 1 4 4 C 1.53046 * 109.44792 * 240.03217 * 2 1 3 5 5 C 1.52754 * 109.38385 * 301.22807 * 4 2 1 6 6 N 1.46924 * 109.01344 * 305.58638 * 5 4 2 7 7 C 1.34776 * 120.63364 * 233.58544 * 6 5 4 8 8 O 1.21592 * 119.99810 * 179.71619 * 7 6 5 9 9 C 1.47537 * 119.99915 * 359.71835 * 7 6 5 10 10 C 1.39897 * 120.18966 * 269.99890 * 9 7 6 11 11 F 1.35104 * 120.09618 * 0.02610 * 10 9 7 12 12 C 1.38226 * 119.80883 * 180.29851 * 10 9 7 13 13 C 1.38303 * 120.18511 * 359.42015 * 12 10 9 14 14 C 1.38297 * 120.38589 * 0.60615 * 13 12 10 15 15 C 1.38218 * 120.19080 * 359.67426 * 14 13 12 16 16 F 1.35107 * 120.09876 * 179.97438 * 15 14 13 17 17 C 1.46933 * 118.73366 * 53.30788 * 6 5 4 18 18 C 1.53046 * 109.46057 * 119.97484 * 2 1 3 19 19 H 1.08996 * 109.52215 * 178.60421 * 18 2 1 20 20 C 1.52997 * 109.49406 * 298.68984 * 18 2 1 21 21 N 1.46501 * 109.46810 * 184.83654 * 20 18 2 22 22 C 1.36937 * 120.00172 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99818 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00292 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99960 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47014 * 90.00083 * 26 24 22 28 28 H 1.48499 * 109.46879 * 209.99659 * 26 24 22 29 29 H 1.48498 * 109.47215 * 330.00068 * 26 24 22 30 30 H 1.08994 * 109.46737 * 300.02645 * 1 2 3 31 31 H 1.08999 * 109.46581 * 60.02569 * 1 2 3 32 32 H 1.09001 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49050 * 61.30649 * 4 2 1 34 34 H 1.09001 * 109.49665 * 181.36700 * 4 2 1 35 35 H 1.09004 * 109.50805 * 185.70094 * 5 4 2 36 36 H 1.09004 * 109.43496 * 65.42696 * 5 4 2 37 37 H 1.07998 * 119.90726 * 179.72606 * 12 10 9 38 38 H 1.07999 * 119.80577 * 180.30029 * 13 12 10 39 39 H 1.08002 * 119.90708 * 179.69729 * 14 13 12 40 40 H 1.09001 * 109.58330 * 66.43796 * 17 6 5 41 41 H 1.09006 * 109.58412 * 186.85703 * 17 6 5 42 42 H 1.08996 * 109.47418 * 304.83631 * 20 18 2 43 43 H 1.08997 * 109.47447 * 64.83892 * 20 18 2 44 44 H 0.96997 * 120.00451 * 359.97438 * 21 20 18 45 45 H 0.97002 * 120.00513 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2502 5 6 1.5040 -2.1513 -1.2643 6 7 1.8619 -2.8090 -0.0002 7 6 2.5155 -3.9877 -0.0004 8 8 2.8107 -4.5193 1.0526 9 6 2.8729 -4.6329 -1.2781 10 6 1.9858 -5.5269 -1.8871 11 9 0.7972 -5.8028 -1.3070 12 6 2.3313 -6.1317 -3.0811 13 6 3.5449 -5.8458 -3.6797 14 6 4.4280 -4.9636 -3.0844 15 6 4.1011 -4.3544 -1.8876 16 9 4.9654 -3.4932 -1.3074 17 6 1.4992 -2.1542 1.2641 18 6 2.0399 -0.7210 1.2500 19 1 3.1296 -0.7433 1.2386 20 6 1.5572 0.0192 2.4990 21 7 2.1396 -0.6026 3.6907 22 6 1.8479 -0.1071 4.9336 23 1 1.1888 0.7424 5.0351 24 6 2.4001 -0.6960 6.0628 25 7 3.2038 -1.7309 5.9390 26 14 2.0027 -0.0195 7.7580 27 1 0.7988 -0.7038 8.2942 28 1 3.1526 -0.2560 8.6674 29 1 1.7407 1.4389 7.6601 30 1 -0.3632 0.5142 0.8897 31 1 -0.3632 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6955 -0.1934 -2.1398 34 1 3.1293 -0.7426 -1.2388 35 1 1.9456 -2.6972 -2.0981 36 1 0.4194 -2.1315 -1.3716 37 1 1.6496 -6.8255 -3.5503 38 1 3.8065 -6.3181 -4.6151 39 1 5.3757 -4.7498 -3.5563 40 1 0.4143 -2.1346 1.3673 41 1 1.9379 -2.7020 2.0983 42 1 1.8671 1.0628 2.4454 43 1 0.4700 -0.0344 2.5557 44 1 2.7313 -1.3658 3.5996 45 1 3.5900 -2.1422 6.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133265875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:39 Heat of formation + Delta-G solvation = -85.727702 kcal Electronic energy + Delta-G solvation = -30375.408565 eV Core-core repulsion = 26029.119743 eV Total energy + Delta-G solvation = -4346.288822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.34710 -49.30221 -40.52939 -39.00769 -37.85368 -34.94277 -33.54627 -31.99009 -31.55669 -30.79964 -29.79422 -27.66694 -25.92489 -24.95632 -23.69313 -23.23571 -23.11962 -21.20008 -20.28572 -18.66979 -18.24966 -17.66151 -17.45955 -16.92019 -16.61656 -15.99771 -15.90220 -15.60777 -15.54082 -14.99094 -14.94369 -14.83198 -14.73177 -14.24697 -13.77739 -13.55430 -13.24709 -13.12481 -12.98279 -12.72559 -12.50835 -12.41139 -12.24471 -12.21710 -11.94555 -11.65235 -11.24430 -11.05182 -10.88596 -10.77233 -10.63038 -10.27021 -10.18041 -10.02733 -9.84234 -9.57009 -9.37334 -9.21318 -8.80432 -8.49766 -6.84052 -5.66912 -2.96835 0.37112 0.52114 2.45679 2.78300 2.98323 3.40081 3.49172 3.53447 3.55893 3.95033 4.06649 4.29932 4.40474 4.62128 4.63769 4.69718 4.84935 4.90493 5.15734 5.20639 5.26303 5.33057 5.33579 5.42312 5.52976 5.56281 5.64061 5.66017 5.67621 5.70250 5.82611 5.90431 5.96565 6.03539 6.16500 6.23829 6.33983 6.36350 6.38323 6.57132 6.63244 6.80247 6.92453 7.38155 7.76831 8.10850 8.50563 9.61447 10.19672 10.53719 11.55343 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003206 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.523238 B = 8731.198919 C = 9394.677264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.075 0.925 4 C -0.129 4.129 5 C 0.106 3.894 6 N -0.596 5.596 7 C 0.559 3.441 8 O -0.508 6.508 9 C -0.188 4.188 10 C 0.160 3.840 11 F -0.120 7.120 12 C -0.166 4.166 13 C -0.050 4.050 14 C -0.165 4.165 15 C 0.162 3.838 16 F -0.118 7.118 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.075 0.925 20 C 0.161 3.839 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 -5.469 -27.712 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.167 4.167 5 C -0.016 4.016 6 N -0.329 5.329 7 C 0.344 3.656 8 O -0.382 6.382 9 C -0.193 4.193 10 C 0.140 3.860 11 F -0.098 7.098 12 C -0.185 4.185 13 C -0.068 4.068 14 C -0.184 4.184 15 C 0.141 3.859 16 F -0.096 7.096 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.015 -5.626 -26.926 27.581 hybrid contribution 0.000 0.213 1.133 1.153 sum -2.015 -5.413 -25.793 26.431 Atomic orbital electron populations 1.21991 0.95170 1.01991 1.01868 1.21076 0.96047 0.99445 0.93779 0.90646 1.21869 1.01335 0.94775 0.98694 1.21671 1.00572 0.93857 0.85549 1.48101 1.56327 1.20157 1.08285 1.17783 0.78608 0.81409 0.87787 1.90910 1.52591 1.63111 1.31624 1.20046 0.96213 1.04089 0.98979 1.17339 0.81348 0.95438 0.91924 1.91591 1.42622 1.91830 1.83786 1.21175 0.99359 1.02911 0.95025 1.20975 0.91700 0.94793 0.99301 1.21191 1.02447 0.99817 0.94976 1.17359 0.86441 0.90236 0.91833 1.91614 1.67557 1.66682 1.83720 1.21839 1.00166 0.93051 0.85090 1.21699 1.01007 0.94189 0.95300 0.90696 1.20672 0.95990 0.94716 0.85288 1.42430 1.57054 1.37533 1.00803 1.19191 1.23379 1.10956 0.83767 0.91248 1.24760 1.00036 0.98321 0.97805 1.69676 1.35434 1.24112 1.28496 0.86210 0.77252 0.78160 0.84672 1.21753 1.21818 1.20834 0.91674 0.93097 0.92476 0.90671 0.91404 0.90820 0.90748 0.83353 0.83409 0.83306 0.90945 0.87753 0.96094 0.95903 0.78112 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.11 37.16 0.30 -1.45 16 2 C -0.08 -1.06 2.71 -90.57 -0.25 -1.31 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.36 5.61 -26.83 -0.15 -1.52 16 5 C 0.11 1.20 5.84 -3.94 -0.02 1.17 16 6 N -0.60 -9.19 2.98 -174.25 -0.52 -9.71 16 7 C 0.56 9.70 6.43 -12.47 -0.08 9.62 16 8 O -0.51 -11.29 16.52 5.29 0.09 -11.21 16 9 C -0.19 -2.49 3.65 -104.86 -0.38 -2.87 16 10 C 0.16 1.77 7.29 -38.96 -0.28 1.48 16 11 F -0.12 -1.53 16.83 2.25 0.04 -1.50 16 12 C -0.17 -1.17 10.01 -39.56 -0.40 -1.57 16 13 C -0.05 -0.27 10.03 -39.54 -0.40 -0.67 16 14 C -0.17 -1.21 10.01 -39.57 -0.40 -1.60 16 15 C 0.16 1.84 7.13 -38.96 -0.28 1.57 16 16 F -0.12 -1.60 16.83 2.25 0.04 -1.56 16 17 C 0.12 2.12 5.05 -3.71 -0.02 2.10 16 18 C -0.10 -1.73 2.15 -90.50 -0.19 -1.92 16 19 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 20 C 0.16 3.29 5.19 -4.04 -0.02 3.27 16 21 N -0.73 -19.31 5.38 -59.91 -0.32 -19.64 16 22 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.48 13.06 55.49 0.72 -28.76 16 26 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 30 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.67 4.99 -51.93 -0.26 0.41 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.72 6.22 -51.93 -0.32 0.40 16 36 H 0.07 0.75 6.70 -51.93 -0.35 0.40 16 37 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.15 0.29 8.06 -52.49 -0.42 -0.13 16 39 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.07 1.22 6.69 -51.93 -0.35 0.88 16 41 H 0.10 2.31 6.20 -51.93 -0.32 1.99 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.46 6.72 -51.93 -0.35 0.11 16 44 H 0.38 10.91 6.89 -40.82 -0.28 10.63 16 45 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -35.69 367.32 -8.18 -43.87 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.92 Total: 6.15 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.81 Total: -1.33 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.12 Total: -58.10 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.69 -8.18 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.860 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds