Wall clock time and date at job start Tue Mar 31 2020 22:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46508 * 2 1 4 4 C 1.53046 * 109.44792 * 240.03217 * 2 1 3 5 5 C 1.52754 * 109.38385 * 301.22807 * 4 2 1 6 6 N 1.46924 * 109.01344 * 305.58638 * 5 4 2 7 7 C 1.34776 * 120.63364 * 233.58544 * 6 5 4 8 8 O 1.21592 * 119.99810 * 179.71619 * 7 6 5 9 9 C 1.47537 * 119.99915 * 359.71835 * 7 6 5 10 10 C 1.39897 * 120.18966 * 269.99890 * 9 7 6 11 11 F 1.35104 * 120.09618 * 0.02610 * 10 9 7 12 12 C 1.38226 * 119.80883 * 180.29851 * 10 9 7 13 13 C 1.38303 * 120.18511 * 359.42015 * 12 10 9 14 14 C 1.38297 * 120.38589 * 0.60615 * 13 12 10 15 15 C 1.38218 * 120.19080 * 359.67426 * 14 13 12 16 16 F 1.35107 * 120.09876 * 179.97438 * 15 14 13 17 17 C 1.46933 * 118.73366 * 53.30788 * 6 5 4 18 18 C 1.53046 * 109.46057 * 119.97484 * 2 1 3 19 19 H 1.08996 * 109.52215 * 178.60421 * 18 2 1 20 20 C 1.52997 * 109.49406 * 298.68984 * 18 2 1 21 21 N 1.46501 * 109.46810 * 184.83654 * 20 18 2 22 22 C 1.36937 * 120.00172 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99818 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00292 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99960 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99902 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47014 * 90.00083 * 26 24 22 28 28 H 1.48499 * 109.46879 * 209.99659 * 26 24 22 29 29 H 1.48498 * 109.47215 * 330.00068 * 26 24 22 30 30 H 1.08994 * 109.46737 * 300.02645 * 1 2 3 31 31 H 1.08999 * 109.46581 * 60.02569 * 1 2 3 32 32 H 1.09001 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.49050 * 61.30649 * 4 2 1 34 34 H 1.09001 * 109.49665 * 181.36700 * 4 2 1 35 35 H 1.09004 * 109.50805 * 185.70094 * 5 4 2 36 36 H 1.09004 * 109.43496 * 65.42696 * 5 4 2 37 37 H 1.07998 * 119.90726 * 179.72606 * 12 10 9 38 38 H 1.07999 * 119.80577 * 180.30029 * 13 12 10 39 39 H 1.08002 * 119.90708 * 179.69729 * 14 13 12 40 40 H 1.09001 * 109.58330 * 66.43796 * 17 6 5 41 41 H 1.09006 * 109.58412 * 186.85703 * 17 6 5 42 42 H 1.08996 * 109.47418 * 304.83631 * 20 18 2 43 43 H 1.08997 * 109.47447 * 64.83892 * 20 18 2 44 44 H 0.96997 * 120.00451 * 359.97438 * 21 20 18 45 45 H 0.97002 * 120.00513 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2502 5 6 1.5040 -2.1513 -1.2643 6 7 1.8619 -2.8090 -0.0002 7 6 2.5155 -3.9877 -0.0004 8 8 2.8107 -4.5193 1.0526 9 6 2.8729 -4.6329 -1.2781 10 6 1.9858 -5.5269 -1.8871 11 9 0.7972 -5.8028 -1.3070 12 6 2.3313 -6.1317 -3.0811 13 6 3.5449 -5.8458 -3.6797 14 6 4.4280 -4.9636 -3.0844 15 6 4.1011 -4.3544 -1.8876 16 9 4.9654 -3.4932 -1.3074 17 6 1.4992 -2.1542 1.2641 18 6 2.0399 -0.7210 1.2500 19 1 3.1296 -0.7433 1.2386 20 6 1.5572 0.0192 2.4990 21 7 2.1396 -0.6026 3.6907 22 6 1.8479 -0.1071 4.9336 23 1 1.1888 0.7424 5.0351 24 6 2.4001 -0.6960 6.0628 25 7 3.2038 -1.7309 5.9390 26 14 2.0027 -0.0195 7.7580 27 1 0.7988 -0.7038 8.2942 28 1 3.1526 -0.2560 8.6674 29 1 1.7407 1.4389 7.6601 30 1 -0.3632 0.5142 0.8897 31 1 -0.3632 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6955 -0.1934 -2.1398 34 1 3.1293 -0.7426 -1.2388 35 1 1.9456 -2.6972 -2.0981 36 1 0.4194 -2.1315 -1.3716 37 1 1.6496 -6.8255 -3.5503 38 1 3.8065 -6.3181 -4.6151 39 1 5.3757 -4.7498 -3.5563 40 1 0.4143 -2.1346 1.3673 41 1 1.9379 -2.7020 2.0983 42 1 1.8671 1.0628 2.4454 43 1 0.4700 -0.0344 2.5557 44 1 2.7313 -1.3658 3.5996 45 1 3.5900 -2.1422 6.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133265875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:38 Heat of formation + Delta-G solvation = -109.676552 kcal Electronic energy + Delta-G solvation = -30376.447065 eV Core-core repulsion = 26029.119743 eV Total energy + Delta-G solvation = -4347.327322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.22092 -50.20219 -41.74434 -39.90773 -39.04608 -36.71075 -35.03268 -33.58238 -32.57539 -31.46761 -31.45131 -28.80057 -27.49695 -26.19622 -24.97922 -24.57663 -23.94623 -22.66460 -21.46733 -19.84105 -19.22564 -18.99799 -18.56276 -18.41461 -17.71837 -16.94683 -16.83054 -16.81209 -16.51500 -16.45855 -16.08936 -15.99453 -15.75307 -15.52455 -15.36195 -15.06531 -14.60055 -14.52811 -14.22239 -13.87051 -13.84482 -13.26367 -13.10189 -13.02261 -12.94653 -12.92973 -12.88032 -12.70146 -12.53119 -12.18295 -12.08475 -11.93430 -11.82007 -11.49338 -11.31529 -11.16563 -10.96184 -10.17379 -9.90532 -9.78973 -9.04142 -7.96711 -5.28024 -0.35640 -0.14625 1.17561 1.42687 1.46455 1.54881 1.72485 2.23159 2.53229 2.63804 3.09839 3.25393 3.35925 3.59879 3.68886 3.70430 3.73754 3.80093 3.97480 4.10692 4.11665 4.17343 4.30353 4.40608 4.50245 4.56737 4.60908 4.63258 4.69949 4.73477 4.84561 4.88959 4.91907 4.98487 5.05138 5.10537 5.10650 5.19915 5.23783 5.31448 5.37787 5.45594 5.55311 5.62877 6.13701 6.23202 6.81709 7.28199 8.04218 8.26774 9.26937 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.003206 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.523238 B = 8731.198919 C = 9394.677264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.086 0.914 4 C -0.121 4.121 5 C 0.100 3.900 6 N -0.592 5.592 7 C 0.550 3.450 8 O -0.581 6.581 9 C -0.215 4.215 10 C 0.137 3.863 11 F -0.139 7.139 12 C -0.145 4.145 13 C -0.023 4.023 14 C -0.147 4.147 15 C 0.134 3.866 16 F -0.142 7.142 17 C 0.127 3.873 18 C -0.090 4.090 19 H 0.047 0.953 20 C 0.161 3.839 21 N -0.750 5.750 22 C -0.246 4.246 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.980 3.020 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.264 1.264 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.183 0.817 38 H 0.202 0.798 39 H 0.180 0.820 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.033 0.967 44 H 0.368 0.632 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 -4.889 -32.259 32.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.159 4.159 5 C -0.020 4.020 6 N -0.323 5.323 7 C 0.337 3.663 8 O -0.461 6.461 9 C -0.220 4.220 10 C 0.117 3.883 11 F -0.118 7.118 12 C -0.164 4.164 13 C -0.041 4.041 14 C -0.165 4.165 15 C 0.114 3.886 16 F -0.120 7.120 17 C 0.005 3.995 18 C -0.109 4.109 19 H 0.065 0.935 20 C 0.034 3.966 21 N -0.393 5.393 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.808 3.192 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.188 1.188 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.200 0.800 38 H 0.219 0.781 39 H 0.197 0.803 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.200 0.800 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.051 -4.977 -31.552 32.088 hybrid contribution 0.295 0.004 2.398 2.416 sum -2.757 -4.973 -29.154 29.704 Atomic orbital electron populations 1.21960 0.93695 1.02012 1.02916 1.21078 0.97155 0.99461 0.92056 0.89554 1.21868 1.00644 0.94226 0.99122 1.22036 1.01972 0.94167 0.83863 1.48229 1.55342 1.19813 1.08938 1.18612 0.77484 0.81427 0.88772 1.90851 1.55513 1.65056 1.34650 1.19836 0.98232 1.06152 0.97787 1.17712 0.80796 0.96298 0.93504 1.91539 1.43675 1.92065 1.84478 1.21636 1.00334 1.01636 0.92768 1.21617 0.89773 0.92595 1.00086 1.21627 1.03793 0.98361 0.92742 1.17776 0.85783 0.91499 0.93567 1.91550 1.68189 1.67769 1.84516 1.21494 0.99897 0.93082 0.85026 1.21555 0.99230 0.93803 0.96344 0.93457 1.20863 0.96104 0.94858 0.84732 1.42715 1.57087 1.37313 1.02143 1.19688 1.22495 1.10677 0.84888 0.90076 1.25713 1.00512 0.98973 1.02154 1.69887 1.37330 1.26060 1.29184 0.85051 0.76629 0.78322 0.79217 1.21330 1.22303 1.18826 0.92993 0.89683 0.92949 0.86356 0.92583 0.88841 0.88792 0.80013 0.78133 0.80270 0.90294 0.93394 0.95444 0.94904 0.80028 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.11 71.98 0.58 -2.48 16 2 C -0.08 -1.88 2.71 -10.76 -0.03 -1.91 16 3 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.12 -2.30 5.61 30.53 0.17 -2.13 16 5 C 0.10 2.15 5.84 86.22 0.50 2.65 16 6 N -0.59 -19.51 2.98 -823.47 -2.45 -21.96 16 7 C 0.55 20.87 6.43 86.70 0.56 21.43 16 8 O -0.58 -29.14 16.52 -4.00 -0.07 -29.20 16 9 C -0.22 -5.88 3.65 -20.02 -0.07 -5.95 16 10 C 0.14 2.92 7.29 22.67 0.17 3.09 16 11 F -0.14 -3.63 16.83 44.97 0.76 -2.87 16 12 C -0.15 -1.47 10.01 22.28 0.22 -1.25 16 13 C -0.02 -0.12 10.03 22.30 0.22 0.10 16 14 C -0.15 -1.61 10.01 22.28 0.22 -1.38 16 15 C 0.13 3.01 7.13 22.67 0.16 3.17 16 16 F -0.14 -4.06 16.83 44.97 0.76 -3.31 16 17 C 0.13 4.93 5.05 86.36 0.44 5.37 16 18 C -0.09 -3.19 2.15 -10.72 -0.02 -3.22 16 19 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 20 C 0.16 6.81 5.19 86.38 0.45 7.26 16 21 N -0.75 -41.81 5.38 -343.46 -1.85 -43.65 16 22 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 23 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 24 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 25 N -0.97 -65.17 13.06 21.65 0.28 -64.88 16 26 Si 0.98 48.95 29.55 68.60 2.03 50.97 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 28 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 29 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 30 H 0.05 1.21 6.57 -2.39 -0.02 1.20 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.13 4.99 -2.39 -0.01 1.12 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.68 6.22 -2.39 -0.01 1.67 16 36 H 0.09 1.67 6.70 -2.38 -0.02 1.66 16 37 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.20 -0.88 8.06 -2.91 -0.02 -0.90 16 39 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.08 2.87 6.69 -2.39 -0.02 2.86 16 41 H 0.05 2.41 6.20 -2.38 -0.01 2.39 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.03 1.35 6.72 -2.39 -0.02 1.33 16 44 H 0.37 22.73 6.89 -92.71 -0.64 22.09 16 45 H 0.25 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -88.77 367.32 4.73 -84.03 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.40 Total: 24.51 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.88 Total: 6.36 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -4.02 Total: -130.50 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.07 Total: -29.20 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 1.51 Total: -6.18 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.97 kcal Total: -88.77 4.73 -84.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.644 kcal (2) G-P(sol) polarization free energy of solvation -88.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds