Wall clock time and date at job start Tue Mar 31 2020 22:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53187 * 109.31314 * 58.64645 * 4 2 1 6 6 N 1.46921 * 108.77794 * 54.63631 * 5 4 2 7 7 C 1.34775 * 120.63610 * 126.41490 * 6 5 4 8 8 O 1.21578 * 120.00404 * 179.97438 * 7 6 5 9 9 C 1.47545 * 119.99450 * 359.97438 * 7 6 5 10 10 C 1.39898 * 120.18889 * 89.73070 * 9 7 6 11 11 F 1.35093 * 120.09744 * 359.97030 * 10 9 7 12 12 C 1.38229 * 119.80487 * 179.70077 * 10 9 7 13 13 C 1.38302 * 120.19038 * 0.59209 * 12 10 9 14 14 C 1.38306 * 120.38335 * 359.68201 * 13 12 10 15 15 C 1.38225 * 120.18961 * 0.02562 * 14 13 12 16 16 F 1.35103 * 120.09684 * 179.97438 * 15 14 13 17 17 C 1.46931 * 118.73731 * 306.38846 * 6 5 4 18 18 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 19 19 H 1.08995 * 109.49521 * 181.40768 * 18 2 1 20 20 C 1.53005 * 109.49407 * 61.31095 * 18 2 1 21 21 N 1.46497 * 109.46686 * 174.99639 * 20 18 2 22 22 C 1.36941 * 119.99619 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00239 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99827 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99703 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99976 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46975 * 90.00118 * 26 24 22 28 28 H 1.48498 * 109.46825 * 209.99856 * 26 24 22 29 29 H 1.48490 * 109.47334 * 329.99947 * 26 24 22 30 30 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 32 32 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 33 33 H 1.08992 * 109.49694 * 178.60260 * 4 2 1 34 34 H 1.09007 * 109.49236 * 298.69458 * 4 2 1 35 35 H 1.09007 * 109.58834 * 294.84955 * 5 4 2 36 36 H 1.08998 * 109.70727 * 174.49673 * 5 4 2 37 37 H 1.07999 * 119.90391 * 180.27839 * 12 10 9 38 38 H 1.07994 * 119.81067 * 179.70234 * 13 12 10 39 39 H 1.07999 * 119.90824 * 179.97438 * 14 13 12 40 40 H 1.08997 * 109.58885 * 293.82300 * 17 6 5 41 41 H 1.09000 * 109.58325 * 173.39370 * 17 6 5 42 42 H 1.08996 * 109.47305 * 294.99975 * 20 18 2 43 43 H 1.09008 * 109.47037 * 55.00272 * 20 18 2 44 44 H 0.96997 * 120.00098 * 0.02562 * 21 20 18 45 45 H 0.97000 * 119.99722 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 1.4989 -2.1541 1.2643 6 7 1.8619 -2.8090 0.0002 7 6 2.5147 -3.9881 0.0002 8 8 2.8090 -4.5201 -1.0526 9 6 2.8721 -4.6333 1.2781 10 6 1.9822 -5.5223 1.8904 11 9 0.7909 -5.7931 1.3137 12 6 2.3278 -6.1270 3.0844 13 6 3.5440 -5.8461 3.6798 14 6 4.4273 -4.9641 3.0843 15 6 4.1004 -4.3550 1.8872 16 9 4.9645 -3.4934 1.3074 17 6 1.4992 -2.1542 -1.2642 18 6 2.0399 -0.7210 -1.2500 19 1 3.1295 -0.7432 -1.2381 20 6 1.5571 0.0193 -2.4990 21 7 2.1427 -0.6001 -3.6905 22 6 1.8523 -0.1034 -4.9332 23 1 1.1920 0.7451 -5.0348 24 6 2.4067 -0.6906 -6.0622 25 7 2.1272 -0.2135 -7.2566 26 14 3.5483 -2.1587 -5.8865 27 1 2.7530 -3.4120 -5.9295 28 1 4.5310 -2.1576 -6.9998 29 1 4.2683 -2.0736 -4.5906 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 3.1292 -0.7431 1.2386 34 1 1.6954 -0.1934 2.1399 35 1 0.4139 -2.1344 1.3673 36 1 1.9352 -2.7033 2.0987 37 1 1.6439 -6.8170 3.5561 38 1 3.8057 -6.3183 4.6151 39 1 5.3748 -4.7499 3.5562 40 1 0.4143 -2.1345 -1.3674 41 1 1.9378 -2.7020 -2.0982 42 1 0.4702 -0.0368 -2.5573 43 1 1.8647 1.0636 -2.4441 44 1 2.7360 -1.3620 -3.5992 45 1 2.5149 -0.6236 -8.0456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133265881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:41 Heat of formation + Delta-G solvation = -82.461505 kcal Electronic energy + Delta-G solvation = -30518.738084 eV Core-core repulsion = 26172.590895 eV Total energy + Delta-G solvation = -4346.147189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.44272 -49.40918 -40.66511 -39.11054 -37.99242 -35.14605 -33.67268 -32.07816 -31.66103 -30.88882 -30.22000 -27.80619 -26.19564 -25.10431 -23.80714 -23.33025 -22.90944 -21.14390 -20.45222 -18.82241 -18.38570 -17.80240 -17.59452 -17.31496 -16.74250 -16.09283 -16.02559 -15.70895 -15.65424 -15.13324 -15.05534 -14.89979 -14.82670 -14.25418 -13.91358 -13.71682 -13.40382 -13.24329 -13.08146 -12.68886 -12.59163 -12.50559 -12.34593 -12.31925 -12.06864 -11.76795 -11.54238 -11.21462 -11.09718 -10.82906 -10.70577 -10.36966 -10.21538 -10.11537 -9.94810 -9.52295 -9.47806 -9.30300 -8.83386 -8.64162 -7.16967 -5.71176 -3.06511 0.27530 0.43137 2.30577 2.67343 2.86317 3.30004 3.48077 3.53069 3.56761 3.85789 3.95263 4.20685 4.30919 4.55124 4.56715 4.67380 4.72834 4.77657 5.03005 5.09392 5.15178 5.23114 5.23709 5.33387 5.43326 5.43872 5.52567 5.57818 5.59207 5.61669 5.65782 5.75735 5.79774 5.89122 5.97266 6.14375 6.19678 6.23099 6.26354 6.38977 6.45480 6.67590 6.79208 7.22502 7.94783 8.04469 8.47950 9.27036 10.00097 10.19229 11.47103 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.003694 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.653924 B = 7577.404251 C = 8434.257227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.106 3.894 6 N -0.596 5.596 7 C 0.561 3.439 8 O -0.514 6.514 9 C -0.190 4.190 10 C 0.160 3.840 11 F -0.120 7.120 12 C -0.165 4.165 13 C -0.048 4.048 14 C -0.165 4.165 15 C 0.161 3.839 16 F -0.118 7.118 17 C 0.117 3.883 18 C -0.107 4.107 19 H 0.074 0.926 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.935 5.935 26 Si 0.880 3.120 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.032 0.968 43 H 0.030 0.970 44 H 0.362 0.638 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -8.724 31.030 32.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.096 0.904 4 C -0.166 4.166 5 C -0.017 4.017 6 N -0.328 5.328 7 C 0.346 3.654 8 O -0.389 6.389 9 C -0.195 4.195 10 C 0.140 3.860 11 F -0.098 7.098 12 C -0.184 4.184 13 C -0.066 4.066 14 C -0.184 4.184 15 C 0.141 3.859 16 F -0.096 7.096 17 C -0.004 4.004 18 C -0.127 4.127 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.710 3.290 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.195 0.805 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.135 -8.833 30.201 31.467 hybrid contribution 0.847 -0.936 -0.225 1.282 sum 0.982 -9.768 29.976 31.543 Atomic orbital electron populations 1.22003 0.94989 1.02034 1.02114 1.21064 0.96190 0.99517 0.93492 0.90401 1.21944 1.01283 0.94656 0.98760 1.21790 1.00686 0.93881 0.85348 1.48107 1.56188 1.20186 1.08365 1.17798 0.78468 0.81297 0.87836 1.90877 1.52992 1.63232 1.31800 1.20006 0.96251 1.04302 0.98936 1.17335 0.81236 0.95478 0.91946 1.91590 1.42368 1.91918 1.83919 1.21190 0.99317 1.02876 0.95009 1.20993 0.91645 0.94700 0.99305 1.21202 1.02492 0.99747 0.94929 1.17353 0.86427 0.90247 0.91864 1.91608 1.67618 1.66670 1.83751 1.21845 1.00527 0.92990 0.85000 1.21764 1.01005 0.94186 0.95707 0.90710 1.20662 0.96393 0.94961 0.84197 1.42792 1.57326 1.37604 1.02613 1.19035 1.24188 1.12326 0.81824 0.89187 1.24642 1.00148 0.99016 0.95116 1.69704 1.48350 1.43204 0.97014 0.86612 0.81421 0.83949 0.76994 1.20846 1.21698 1.20281 0.92483 0.92933 0.91504 0.91384 0.90516 0.90546 0.90701 0.83273 0.83332 0.83254 0.90456 0.88474 0.94980 0.95172 0.80537 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.11 37.16 0.30 -1.35 16 2 C -0.08 -0.98 2.71 -90.57 -0.25 -1.22 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.25 5.62 -26.61 -0.15 -1.40 16 5 C 0.11 1.09 5.87 -3.72 -0.02 1.07 16 6 N -0.60 -8.60 2.97 -174.00 -0.52 -9.12 16 7 C 0.56 9.17 6.43 -12.47 -0.08 9.09 16 8 O -0.51 -10.78 16.52 5.30 0.09 -10.70 16 9 C -0.19 -2.36 3.64 -104.86 -0.38 -2.74 16 10 C 0.16 1.66 7.29 -38.96 -0.28 1.37 16 11 F -0.12 -1.44 16.83 2.25 0.04 -1.40 16 12 C -0.17 -1.06 10.01 -39.56 -0.40 -1.46 16 13 C -0.05 -0.23 10.03 -39.53 -0.40 -0.63 16 14 C -0.16 -1.10 10.01 -39.56 -0.40 -1.49 16 15 C 0.16 1.72 7.15 -38.96 -0.28 1.44 16 16 F -0.12 -1.51 16.83 2.25 0.04 -1.47 16 17 C 0.12 1.94 5.05 -3.71 -0.02 1.92 16 18 C -0.11 -1.69 2.15 -90.49 -0.19 -1.88 16 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 20 C 0.17 3.21 5.19 -4.04 -0.02 3.19 16 21 N -0.76 -18.78 5.18 -59.91 -0.31 -19.09 16 22 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 23 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -30.31 13.97 55.49 0.78 -29.53 16 26 Si 0.88 23.79 27.74 -169.99 -4.71 19.07 16 27 H -0.28 -7.67 7.11 56.52 0.40 -7.26 16 28 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 29 H -0.28 -7.25 6.52 56.52 0.37 -6.88 16 30 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.79 6.58 -51.92 -0.34 0.45 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.08 0.71 6.69 -51.92 -0.35 0.36 16 36 H 0.07 0.67 6.22 -51.93 -0.32 0.35 16 37 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.15 0.21 8.06 -52.49 -0.42 -0.22 16 39 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.08 1.21 6.69 -51.93 -0.35 0.86 16 41 H 0.10 1.97 6.21 -51.93 -0.32 1.64 16 42 H 0.03 0.62 6.73 -51.93 -0.35 0.27 16 43 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.36 9.09 4.76 -40.82 -0.19 8.89 16 45 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -36.47 364.25 -7.81 -44.28 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.88 Total: 3.77 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.82 Total: -1.30 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.05 Total: -57.74 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.71 Total: 19.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.47 -7.81 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.182 kcal (2) G-P(sol) polarization free energy of solvation -36.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds