Wall clock time and date at job start Tue Mar 31 2020 22:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.45966 * 2 1 4 4 C 1.53037 * 109.46300 * 119.97485 * 2 1 3 5 5 C 1.53191 * 109.31499 * 181.37285 * 4 2 1 6 6 N 1.46925 * 108.77423 * 305.36620 * 5 4 2 7 7 C 1.34779 * 120.63076 * 233.58539 * 6 5 4 8 8 O 1.21589 * 120.00119 * 180.02562 * 7 6 5 9 9 C 1.47535 * 119.99906 * 0.02562 * 7 6 5 10 10 C 1.39912 * 120.18734 * 89.72852 * 9 7 6 11 11 F 1.35089 * 120.09454 * 359.97438 * 10 9 7 12 12 C 1.38225 * 119.80278 * 179.72083 * 10 9 7 13 13 C 1.38306 * 120.19076 * 0.55298 * 12 10 9 14 14 C 1.38302 * 120.38359 * 359.72227 * 13 12 10 15 15 C 1.38222 * 120.19165 * 359.97438 * 14 13 12 16 16 F 1.35095 * 120.09592 * 180.02562 * 15 14 13 17 17 C 1.46926 * 118.73914 * 53.60547 * 6 5 4 18 18 C 1.53043 * 109.44634 * 240.03782 * 2 1 3 19 19 H 1.09000 * 109.49902 * 298.56731 * 18 2 1 20 20 C 1.52996 * 109.49773 * 58.66767 * 18 2 1 21 21 N 1.46504 * 109.46928 * 184.83272 * 20 18 2 22 22 C 1.36945 * 119.99811 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99541 * 0.02562 * 22 21 20 24 24 C 1.38804 * 119.99820 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47105 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46957 * 120.00217 * 26 24 22 29 29 H 1.48506 * 109.46938 * 239.99859 * 26 24 22 30 30 H 1.08998 * 109.46704 * 300.01854 * 1 2 3 31 31 H 1.08993 * 109.47252 * 60.02426 * 1 2 3 32 32 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49928 * 61.42201 * 4 2 1 34 34 H 1.08998 * 109.49765 * 301.32528 * 4 2 1 35 35 H 1.08998 * 109.59071 * 185.58119 * 5 4 2 36 36 H 1.09003 * 109.70105 * 65.21889 * 5 4 2 37 37 H 1.07998 * 119.89884 * 180.27112 * 12 10 9 38 38 H 1.07992 * 119.80410 * 179.74393 * 13 12 10 39 39 H 1.08001 * 119.90146 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.58406 * 66.18027 * 17 6 5 41 41 H 1.09002 * 109.59019 * 186.60016 * 17 6 5 42 42 H 1.08997 * 109.47349 * 304.83465 * 20 18 2 43 43 H 1.09004 * 109.47089 * 64.83707 * 20 18 2 44 44 H 0.96997 * 119.99946 * 0.02562 * 21 20 18 45 45 H 0.96997 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5715 -0.6890 1.2639 6 7 4.0677 -1.2492 -0.0005 7 6 4.9618 -2.2578 -0.0007 8 8 5.3651 -2.7124 -1.0538 9 6 5.4510 -2.8101 1.2769 10 6 4.7761 -3.8720 1.8887 11 9 3.6726 -4.3956 1.3116 12 6 5.2448 -4.3871 3.0827 13 6 6.3708 -3.8484 3.6783 14 6 7.0407 -2.7949 3.0833 15 6 6.5895 -2.2716 1.8861 16 9 7.2457 -1.2429 1.3063 17 6 3.5711 -0.6888 -1.2646 18 6 2.0396 -0.7207 -1.2503 19 1 1.6974 -1.7556 -1.2385 20 6 1.5024 -0.0187 -2.4990 21 7 1.8944 -0.7748 -3.6910 22 6 1.5234 -0.3348 -4.9336 23 1 0.9421 0.5698 -5.0348 24 6 1.8943 -1.0515 -6.0630 25 7 2.6023 -2.1542 -5.9396 26 14 1.3888 -0.4509 -7.7581 27 1 0.6035 0.8024 -7.6253 28 1 2.6024 -0.1913 -8.5736 29 1 0.5581 -1.4870 -8.4229 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5134 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7557 1.2381 34 1 1.6575 -0.2209 2.1397 35 1 3.9418 -1.2851 2.0979 36 1 3.9167 0.3397 1.3682 37 1 4.7275 -5.2097 3.5541 38 1 6.7291 -4.2530 4.6132 39 1 7.9194 -2.3805 3.5550 40 1 3.9142 0.3407 -1.3676 41 1 3.9412 -1.2846 -2.0989 42 1 0.4152 0.0369 -2.4452 43 1 1.9154 0.9885 -2.5555 44 1 2.4162 -1.5874 -3.6000 45 1 2.8612 -2.6551 -6.7288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133265882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:44 Heat of formation + Delta-G solvation = -88.860184 kcal Electronic energy + Delta-G solvation = -30224.900013 eV Core-core repulsion = 25878.475356 eV Total energy + Delta-G solvation = -4346.424657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.35174 -49.30811 -40.42796 -38.91908 -37.77900 -34.97879 -33.70258 -32.04471 -31.55755 -30.80135 -29.77723 -28.17853 -25.81582 -24.49301 -23.24739 -23.20236 -22.95014 -21.22375 -20.26801 -19.38519 -18.47822 -17.65565 -17.56455 -16.94501 -16.61060 -16.00120 -15.87083 -15.61037 -15.52102 -14.91735 -14.82840 -14.74095 -14.37485 -14.12412 -13.86920 -13.54464 -13.22749 -13.11603 -13.05514 -12.72257 -12.53774 -12.42206 -12.27437 -12.18976 -11.87486 -11.72199 -11.51782 -10.97503 -10.87139 -10.78668 -10.60300 -10.26731 -10.16305 -10.01670 -9.82411 -9.57163 -9.37135 -9.21502 -8.81440 -8.54803 -6.83596 -5.67106 -2.96942 0.36848 0.51897 2.45327 2.77956 2.97967 3.39775 3.48829 3.53510 3.56527 3.94845 4.06332 4.29664 4.40264 4.61602 4.63511 4.69276 4.83716 4.88721 5.13210 5.19430 5.26713 5.33301 5.36165 5.42574 5.52921 5.63755 5.65143 5.65839 5.68874 5.73291 5.81628 5.92940 5.96413 6.03919 6.18439 6.23374 6.25598 6.34354 6.46799 6.56708 6.61000 6.83467 6.92329 7.37296 7.77266 8.10289 8.50427 9.61385 10.19627 10.53653 11.55218 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003208 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.824085 B = 8726.455147 C = 9516.890190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.597 5.597 7 C 0.559 3.441 8 O -0.508 6.508 9 C -0.188 4.188 10 C 0.162 3.838 11 F -0.118 7.118 12 C -0.165 4.165 13 C -0.049 4.049 14 C -0.166 4.166 15 C 0.160 3.840 16 F -0.120 7.120 17 C 0.120 3.880 18 C -0.102 4.102 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.028 0.972 43 H 0.019 0.981 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -0.212 27.741 28.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.016 4.016 6 N -0.330 5.330 7 C 0.344 3.656 8 O -0.382 6.382 9 C -0.194 4.194 10 C 0.141 3.859 11 F -0.096 7.096 12 C -0.184 4.184 13 C -0.068 4.068 14 C -0.185 4.185 15 C 0.140 3.860 16 F -0.098 7.098 17 C -0.001 4.001 18 C -0.121 4.121 19 H 0.094 0.906 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.428 -0.323 26.958 27.501 hybrid contribution -0.156 0.076 -1.136 1.149 sum 5.273 -0.247 25.822 26.356 Atomic orbital electron populations 1.21876 0.94822 1.02014 1.01731 1.21095 0.96087 0.99351 0.93801 0.90974 1.21978 0.94156 1.01818 0.98639 1.21742 0.95085 0.99193 0.85570 1.48118 1.42137 1.34424 1.08311 1.17785 0.79858 0.80129 0.87797 1.90909 1.56784 1.58904 1.31619 1.20047 0.99187 1.01156 0.98963 1.17359 0.84279 0.92354 0.91867 1.91609 1.49410 1.84700 1.83844 1.21196 0.99208 1.02979 0.95048 1.20977 0.92898 0.93571 0.99308 1.21175 1.02925 0.99398 0.94980 1.17336 0.90382 0.86435 0.91886 1.91588 1.79147 1.55287 1.83803 1.21826 0.93904 0.99261 0.85144 1.21726 0.94209 1.00921 0.95282 0.90648 1.20718 0.96847 0.94029 0.85271 1.42438 1.65283 1.29282 1.00816 1.19237 1.27802 1.06387 0.83759 0.91194 1.24760 1.00856 0.97539 0.97806 1.69689 1.42333 1.17320 1.28365 0.86144 0.77612 0.77690 0.84892 1.20613 1.21896 1.21935 0.93209 0.91558 0.92737 0.91331 0.90703 0.90712 0.90966 0.83303 0.83404 0.83348 0.91198 0.87627 0.95438 0.96352 0.78122 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.82 37.16 0.33 -1.43 16 2 C -0.08 -1.06 2.23 -90.58 -0.20 -1.27 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.13 -1.36 5.36 -26.61 -0.14 -1.50 16 5 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 6 N -0.60 -9.24 2.97 -173.99 -0.52 -9.75 16 7 C 0.56 9.71 6.43 -12.47 -0.08 9.63 16 8 O -0.51 -11.30 16.52 5.29 0.09 -11.21 16 9 C -0.19 -2.49 3.65 -104.86 -0.38 -2.88 16 10 C 0.16 1.84 7.13 -38.96 -0.28 1.57 16 11 F -0.12 -1.60 16.83 2.25 0.04 -1.56 16 12 C -0.17 -1.21 10.01 -39.56 -0.40 -1.60 16 13 C -0.05 -0.27 10.03 -39.53 -0.40 -0.67 16 14 C -0.17 -1.17 10.01 -39.56 -0.40 -1.57 16 15 C 0.16 1.77 7.29 -38.96 -0.28 1.48 16 16 F -0.12 -1.53 16.83 2.25 0.04 -1.50 16 17 C 0.12 2.13 5.52 -3.71 -0.02 2.11 16 18 C -0.10 -1.72 1.92 -90.50 -0.17 -1.89 16 19 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 20 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 21 N -0.73 -19.28 5.38 -59.91 -0.32 -19.60 16 22 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 23 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -29.46 13.06 55.49 0.72 -28.74 16 26 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.86 6.29 -51.93 -0.33 0.54 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.15 0.29 8.06 -52.49 -0.42 -0.14 16 39 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.11 2.33 6.20 -51.93 -0.32 2.01 16 42 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 10.89 6.89 -40.82 -0.28 10.61 16 45 H 0.25 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -35.71 373.42 -8.25 -43.97 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.19 Total: 5.84 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.72 Total: -1.21 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.11 Total: -58.09 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.71 -8.25 -43.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.895 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds