Wall clock time and date at job start Tue Mar 31 2020 22:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.45966 * 2 1 4 4 C 1.53037 * 109.46300 * 119.97485 * 2 1 3 5 5 C 1.53191 * 109.31499 * 181.37285 * 4 2 1 6 6 N 1.46925 * 108.77423 * 305.36620 * 5 4 2 7 7 C 1.34779 * 120.63076 * 233.58539 * 6 5 4 8 8 O 1.21589 * 120.00119 * 180.02562 * 7 6 5 9 9 C 1.47535 * 119.99906 * 0.02562 * 7 6 5 10 10 C 1.39912 * 120.18734 * 89.72852 * 9 7 6 11 11 F 1.35089 * 120.09454 * 359.97438 * 10 9 7 12 12 C 1.38225 * 119.80278 * 179.72083 * 10 9 7 13 13 C 1.38306 * 120.19076 * 0.55298 * 12 10 9 14 14 C 1.38302 * 120.38359 * 359.72227 * 13 12 10 15 15 C 1.38222 * 120.19165 * 359.97438 * 14 13 12 16 16 F 1.35095 * 120.09592 * 180.02562 * 15 14 13 17 17 C 1.46926 * 118.73914 * 53.60547 * 6 5 4 18 18 C 1.53043 * 109.44634 * 240.03782 * 2 1 3 19 19 H 1.09000 * 109.49902 * 298.56731 * 18 2 1 20 20 C 1.52996 * 109.49773 * 58.66767 * 18 2 1 21 21 N 1.46504 * 109.46928 * 184.83272 * 20 18 2 22 22 C 1.36945 * 119.99811 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99541 * 0.02562 * 22 21 20 24 24 C 1.38804 * 119.99820 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00162 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47105 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46957 * 120.00217 * 26 24 22 29 29 H 1.48506 * 109.46938 * 239.99859 * 26 24 22 30 30 H 1.08998 * 109.46704 * 300.01854 * 1 2 3 31 31 H 1.08993 * 109.47252 * 60.02426 * 1 2 3 32 32 H 1.09005 * 109.46888 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49928 * 61.42201 * 4 2 1 34 34 H 1.08998 * 109.49765 * 301.32528 * 4 2 1 35 35 H 1.08998 * 109.59071 * 185.58119 * 5 4 2 36 36 H 1.09003 * 109.70105 * 65.21889 * 5 4 2 37 37 H 1.07998 * 119.89884 * 180.27112 * 12 10 9 38 38 H 1.07992 * 119.80410 * 179.74393 * 13 12 10 39 39 H 1.08001 * 119.90146 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.58406 * 66.18027 * 17 6 5 41 41 H 1.09002 * 109.59019 * 186.60016 * 17 6 5 42 42 H 1.08997 * 109.47349 * 304.83465 * 20 18 2 43 43 H 1.09004 * 109.47089 * 64.83707 * 20 18 2 44 44 H 0.96997 * 119.99946 * 0.02562 * 21 20 18 45 45 H 0.96997 * 119.99923 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 3.5715 -0.6890 1.2639 6 7 4.0677 -1.2492 -0.0005 7 6 4.9618 -2.2578 -0.0007 8 8 5.3651 -2.7124 -1.0538 9 6 5.4510 -2.8101 1.2769 10 6 4.7761 -3.8720 1.8887 11 9 3.6726 -4.3956 1.3116 12 6 5.2448 -4.3871 3.0827 13 6 6.3708 -3.8484 3.6783 14 6 7.0407 -2.7949 3.0833 15 6 6.5895 -2.2716 1.8861 16 9 7.2457 -1.2429 1.3063 17 6 3.5711 -0.6888 -1.2646 18 6 2.0396 -0.7207 -1.2503 19 1 1.6974 -1.7556 -1.2385 20 6 1.5024 -0.0187 -2.4990 21 7 1.8944 -0.7748 -3.6910 22 6 1.5234 -0.3348 -4.9336 23 1 0.9421 0.5698 -5.0348 24 6 1.8943 -1.0515 -6.0630 25 7 2.6023 -2.1542 -5.9396 26 14 1.3888 -0.4509 -7.7581 27 1 0.6035 0.8024 -7.6253 28 1 2.6024 -0.1913 -8.5736 29 1 0.5581 -1.4870 -8.4229 30 1 -0.3633 0.5141 0.8898 31 1 -0.3633 0.5134 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7557 1.2381 34 1 1.6575 -0.2209 2.1397 35 1 3.9418 -1.2851 2.0979 36 1 3.9167 0.3397 1.3682 37 1 4.7275 -5.2097 3.5541 38 1 6.7291 -4.2530 4.6132 39 1 7.9194 -2.3805 3.5550 40 1 3.9142 0.3407 -1.3676 41 1 3.9412 -1.2846 -2.0989 42 1 0.4152 0.0369 -2.4452 43 1 1.9154 0.9885 -2.5555 44 1 2.4162 -1.5874 -3.6000 45 1 2.8612 -2.6551 -6.7288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133265882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:43 Heat of formation + Delta-G solvation = -112.600104 kcal Electronic energy + Delta-G solvation = -30225.929453 eV Core-core repulsion = 25878.475356 eV Total energy + Delta-G solvation = -4347.454097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.22541 -50.20655 -41.63925 -39.80354 -39.00754 -36.69845 -35.20123 -33.60939 -32.61832 -31.46502 -31.43565 -29.31985 -27.48627 -25.61220 -24.93743 -23.98641 -23.93699 -22.66900 -21.50736 -20.55888 -19.35215 -19.16102 -18.55699 -18.45963 -17.72678 -16.94594 -16.81593 -16.78023 -16.51761 -16.32668 -16.12152 -15.65355 -15.60754 -15.50886 -15.27490 -15.14582 -14.52499 -14.37624 -14.20184 -14.12177 -13.84187 -13.29093 -13.10827 -13.04050 -13.01709 -12.93227 -12.82720 -12.71731 -12.66312 -12.20198 -12.04936 -11.94332 -11.85631 -11.46773 -11.28613 -11.14629 -10.96297 -10.17363 -9.90614 -9.85945 -9.03203 -7.96704 -5.27832 -0.35792 -0.14735 1.17301 1.42837 1.45514 1.55638 1.72131 2.23099 2.53193 2.63605 3.09624 3.25310 3.36156 3.58860 3.68836 3.69893 3.73261 3.79443 3.93907 4.11426 4.11677 4.16707 4.30614 4.43921 4.52891 4.56610 4.62878 4.66411 4.71740 4.74459 4.86607 4.89105 4.89789 4.98173 5.01970 5.07269 5.10558 5.18041 5.20176 5.32815 5.44045 5.45701 5.53097 5.62774 6.12970 6.23489 6.81267 7.28420 8.04507 8.26950 9.27158 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003208 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.824085 B = 8726.455147 C = 9516.890190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 H 0.088 0.912 4 C -0.119 4.119 5 C 0.101 3.899 6 N -0.594 5.594 7 C 0.550 3.450 8 O -0.581 6.581 9 C -0.215 4.215 10 C 0.134 3.866 11 F -0.142 7.142 12 C -0.147 4.147 13 C -0.023 4.023 14 C -0.145 4.145 15 C 0.137 3.863 16 F -0.139 7.139 17 C 0.125 3.875 18 C -0.087 4.087 19 H 0.047 0.953 20 C 0.158 3.842 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.082 0.918 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.260 1.260 28 H -0.295 1.295 29 H -0.293 1.293 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.180 0.820 38 H 0.202 0.798 39 H 0.183 0.817 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.026 0.974 44 H 0.368 0.632 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 0.920 32.311 32.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.157 4.157 5 C -0.020 4.020 6 N -0.325 5.325 7 C 0.337 3.663 8 O -0.461 6.461 9 C -0.220 4.220 10 C 0.114 3.886 11 F -0.120 7.120 12 C -0.165 4.165 13 C -0.041 4.041 14 C -0.164 4.164 15 C 0.117 3.883 16 F -0.118 7.118 17 C 0.003 3.997 18 C -0.107 4.107 19 H 0.065 0.935 20 C 0.032 3.968 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.807 3.193 27 H -0.184 1.184 28 H -0.222 1.222 29 H -0.220 1.220 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.197 0.803 38 H 0.219 0.781 39 H 0.200 0.800 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.134 0.876 31.608 32.034 hybrid contribution -0.046 -0.273 -2.407 2.423 sum 5.088 0.602 29.201 29.647 Atomic orbital electron populations 1.21844 0.93831 1.01720 1.02682 1.21101 0.96810 0.99673 0.92114 0.89331 1.21965 0.93388 1.01308 0.99047 1.22117 0.95637 1.00401 0.83857 1.48252 1.41389 1.33859 1.08985 1.18615 0.79200 0.79679 0.88780 1.90850 1.59362 1.61203 1.34647 1.19837 1.01277 1.03149 0.97764 1.17775 0.84399 0.92838 0.93596 1.91545 1.50750 1.85084 1.84636 1.21632 0.99313 1.02767 0.92820 1.21619 0.90814 0.91542 1.00084 1.21634 1.03273 0.98743 0.92718 1.17709 0.90192 0.86929 0.93469 1.91537 1.79439 1.56286 1.84497 1.21509 0.94630 0.98458 0.85133 1.21570 0.93252 0.99587 0.96301 0.93456 1.20920 0.97335 0.93872 0.84699 1.42720 1.65111 1.29250 1.02154 1.19723 1.26677 1.06256 0.84876 0.90053 1.25707 1.01594 0.97973 1.02131 1.69895 1.44427 1.19091 1.29076 0.84993 0.77066 0.77748 0.79457 1.18399 1.22191 1.21997 0.89858 0.92942 0.93689 0.92628 0.86403 0.88727 0.88837 0.80273 0.78131 0.80007 0.90457 0.93183 0.94466 0.95589 0.80042 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.82 71.98 0.63 -2.51 16 2 C -0.08 -1.86 2.23 -10.76 -0.02 -1.89 16 3 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.12 -2.27 5.36 30.67 0.16 -2.10 16 5 C 0.10 2.14 6.34 86.36 0.55 2.68 16 6 N -0.59 -19.57 2.97 -822.65 -2.45 -22.01 16 7 C 0.55 20.88 6.43 86.69 0.56 21.43 16 8 O -0.58 -29.13 16.52 -4.00 -0.07 -29.20 16 9 C -0.22 -5.87 3.65 -20.02 -0.07 -5.95 16 10 C 0.13 3.01 7.13 22.67 0.16 3.17 16 11 F -0.14 -4.06 16.83 44.97 0.76 -3.30 16 12 C -0.15 -1.60 10.01 22.28 0.22 -1.38 16 13 C -0.02 -0.12 10.03 22.30 0.22 0.10 16 14 C -0.15 -1.46 10.01 22.28 0.22 -1.24 16 15 C 0.14 2.92 7.29 22.67 0.17 3.08 16 16 F -0.14 -3.63 16.83 44.97 0.76 -2.87 16 17 C 0.13 4.85 5.52 86.36 0.48 5.32 16 18 C -0.09 -3.10 1.92 -10.72 -0.02 -3.12 16 19 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 20 C 0.16 6.67 5.41 86.38 0.47 7.14 16 21 N -0.75 -41.69 5.38 -343.45 -1.85 -43.54 16 22 C -0.24 -14.50 9.99 84.03 0.84 -13.66 16 23 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 24 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 25 N -0.97 -65.15 13.06 21.65 0.28 -64.87 16 26 Si 0.98 48.95 29.55 68.60 2.03 50.98 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 29 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.29 6.29 -2.39 -0.02 1.28 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.68 6.21 -2.39 -0.01 1.67 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.20 -0.88 8.06 -2.91 -0.02 -0.90 16 39 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 41 H 0.05 2.51 6.20 -2.39 -0.01 2.49 16 42 H 0.04 1.53 6.15 -2.39 -0.01 1.51 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.37 22.69 6.89 -92.71 -0.64 22.05 16 45 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -88.82 373.42 4.88 -83.94 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.38 Total: 24.40 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.03 Total: 6.47 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -4.01 Total: -130.42 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.07 Total: -29.20 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.51 Total: -6.17 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -88.82 4.88 -83.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.659 kcal (2) G-P(sol) polarization free energy of solvation -88.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds