Wall clock time and date at job start Tue Mar 31 2020 22:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46076 * 2 1 4 4 C 1.53034 * 109.46254 * 240.02932 * 2 1 3 5 5 C 1.53195 * 109.31603 * 178.63041 * 4 2 1 6 6 N 1.46927 * 108.77566 * 54.62988 * 5 4 2 7 7 C 1.34783 * 120.62624 * 126.37221 * 6 5 4 8 8 O 1.21582 * 119.99513 * 180.02562 * 7 6 5 9 9 C 1.47533 * 120.00111 * 0.02562 * 7 6 5 10 10 C 1.39906 * 120.18586 * 90.27371 * 9 7 6 11 11 F 1.35097 * 120.09977 * 0.02562 * 10 9 7 12 12 C 1.38223 * 119.80564 * 180.24717 * 10 9 7 13 13 C 1.38307 * 120.18807 * 359.47678 * 12 10 9 14 14 C 1.38304 * 120.38399 * 0.27716 * 13 12 10 15 15 C 1.38215 * 120.19270 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.10186 * 180.02562 * 15 14 13 17 17 C 1.46925 * 118.73795 * 306.64957 * 6 5 4 18 18 C 1.52758 * 109.00950 * 53.30957 * 17 6 5 19 19 H 1.09000 * 109.39058 * 65.50957 * 18 17 6 20 20 C 1.53005 * 109.56250 * 185.55084 * 18 17 6 21 21 N 1.46494 * 109.46924 * 294.96293 * 20 18 17 22 22 C 1.36946 * 119.99593 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00142 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99700 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99842 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00213 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47340 * 89.99922 * 26 24 22 28 28 H 1.48503 * 109.46738 * 210.00225 * 26 24 22 29 29 H 1.48500 * 109.46687 * 329.99494 * 26 24 22 30 30 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47449 * 299.97418 * 1 2 3 32 32 H 1.09006 * 109.46865 * 59.97181 * 1 2 3 33 33 H 1.09005 * 109.50058 * 58.67666 * 4 2 1 34 34 H 1.09005 * 109.52652 * 298.59499 * 4 2 1 35 35 H 1.09009 * 109.58455 * 294.84752 * 5 4 2 36 36 H 1.08995 * 109.70914 * 174.49715 * 5 4 2 37 37 H 1.08002 * 119.90899 * 179.75743 * 12 10 9 38 38 H 1.08003 * 119.81024 * 180.25511 * 13 12 10 39 39 H 1.08007 * 119.90553 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.58365 * 173.14210 * 17 6 5 41 41 H 1.08996 * 109.58601 * 293.56656 * 17 6 5 42 42 H 1.09001 * 109.47059 * 54.96421 * 20 18 17 43 43 H 1.09006 * 109.46574 * 174.96170 * 20 18 17 44 44 H 0.97000 * 120.00690 * 359.97438 * 21 20 18 45 45 H 0.97004 * 120.00349 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6890 -1.2639 6 7 4.0676 -1.2493 0.0004 7 6 4.9610 -2.2585 0.0005 8 8 5.3636 -2.7137 1.0535 9 6 5.4503 -2.8106 -1.2771 10 6 6.5925 -2.2760 -1.8830 11 9 7.2524 -1.2517 -1.2997 12 6 7.0411 -2.7960 -3.0826 13 6 6.3705 -3.8488 -3.6784 14 6 5.2437 -4.3866 -3.0837 15 6 4.7783 -3.8755 -1.8868 16 9 3.6776 -4.4026 -1.3072 17 6 3.5668 -0.6926 1.2645 18 6 2.0395 -0.7208 1.2502 19 1 1.6968 -1.7555 1.2386 20 6 1.5024 -0.0188 2.4990 21 7 1.8910 -0.7771 3.6907 22 6 1.5193 -0.3376 4.9333 23 1 0.9401 0.5682 5.0347 24 6 1.8880 -1.0559 6.0624 25 7 1.5304 -0.6337 7.2567 26 14 2.8917 -2.6216 5.8871 27 1 4.3385 -2.2895 5.9302 28 1 2.5629 -3.5476 7.0005 29 1 2.5714 -3.2722 4.5912 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6574 -0.2207 -2.1398 34 1 1.6976 -1.7557 -1.2388 35 1 3.9146 0.3405 -1.3670 36 1 3.9438 -1.2834 -2.0982 37 1 7.9203 -2.3820 -3.5538 38 1 6.7288 -4.2530 -4.6136 39 1 4.7258 -5.2084 -3.5559 40 1 3.9341 -1.2911 2.0982 41 1 3.9095 0.3365 1.3719 42 1 1.9176 0.9873 2.5572 43 1 0.4153 0.0394 2.4438 44 1 2.4109 -1.5910 3.5996 45 1 1.7883 -1.1354 8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133265884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:47 Heat of formation + Delta-G solvation = -85.543694 kcal Electronic energy + Delta-G solvation = -30366.883241 eV Core-core repulsion = 26020.602398 eV Total energy + Delta-G solvation = -4346.280843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.44221 -49.41159 -40.57372 -39.03304 -37.92783 -35.17996 -33.83137 -32.14558 -31.66656 -30.89109 -30.21871 -28.33193 -26.12043 -24.60833 -23.33514 -23.16213 -22.89800 -21.14728 -20.46019 -19.52328 -18.58203 -17.82728 -17.70664 -17.33057 -16.74416 -16.09555 -16.00276 -15.70827 -15.62885 -15.04956 -14.89830 -14.83462 -14.40861 -14.27392 -14.04788 -13.57708 -13.40478 -13.24047 -13.10270 -12.83309 -12.56105 -12.52087 -12.37093 -12.30301 -12.00390 -11.82707 -11.71086 -11.26518 -10.99840 -10.87914 -10.66922 -10.38221 -10.20987 -10.10426 -9.92986 -9.52226 -9.47298 -9.30472 -8.84581 -8.69042 -7.16549 -5.71117 -3.06436 0.27243 0.43054 2.30100 2.66901 2.85884 3.29965 3.48058 3.53009 3.56736 3.85638 3.94854 4.20477 4.30693 4.54975 4.55829 4.67387 4.73008 4.74499 5.00854 5.09102 5.15882 5.23450 5.25491 5.33715 5.43784 5.50096 5.54329 5.57684 5.60632 5.61575 5.69358 5.75987 5.84029 5.86276 5.99988 6.10646 6.14235 6.24729 6.32725 6.36424 6.44260 6.72330 6.78399 7.21666 7.94206 8.04555 8.47963 9.27094 10.00165 10.19265 11.47151 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003681 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.046102 B = 7605.733315 C = 8528.948439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.074 0.926 4 C -0.128 4.128 5 C 0.107 3.893 6 N -0.597 5.597 7 C 0.561 3.439 8 O -0.514 6.514 9 C -0.190 4.190 10 C 0.161 3.839 11 F -0.120 7.120 12 C -0.165 4.165 13 C -0.048 4.048 14 C -0.165 4.165 15 C 0.162 3.838 16 F -0.118 7.118 17 C 0.118 3.882 18 C -0.107 4.107 19 H 0.075 0.925 20 C 0.164 3.836 21 N -0.757 5.757 22 C -0.244 4.244 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.935 5.935 26 Si 0.880 3.120 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.028 0.972 43 H 0.037 0.963 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 -3.412 -31.029 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.166 4.166 5 C -0.016 4.016 6 N -0.329 5.329 7 C 0.346 3.654 8 O -0.389 6.389 9 C -0.195 4.195 10 C 0.140 3.860 11 F -0.098 7.098 12 C -0.184 4.184 13 C -0.066 4.066 14 C -0.184 4.184 15 C 0.141 3.859 16 F -0.096 7.096 17 C -0.003 4.003 18 C -0.127 4.127 19 H 0.093 0.907 20 C 0.036 3.964 21 N -0.403 5.403 22 C -0.374 4.374 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.583 5.583 26 Si 0.710 3.290 27 H -0.208 1.208 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.195 0.805 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.729 -3.479 -30.199 31.366 hybrid contribution 0.642 -1.095 0.227 1.289 sum 8.371 -4.574 -29.972 31.454 Atomic orbital electron populations 1.21883 0.94629 1.02063 1.01964 1.21077 0.96242 0.99424 0.93493 0.90727 1.21987 0.94072 1.01835 0.98743 1.21771 0.95130 0.99326 0.85391 1.48121 1.42035 1.34410 1.08369 1.17797 0.79733 0.79996 0.87841 1.90879 1.57063 1.59151 1.31792 1.20001 0.99269 1.01238 0.99034 1.17334 0.90226 0.86537 0.91854 1.91592 1.78940 1.55619 1.83634 1.21191 1.02977 0.99375 0.94865 1.20997 0.92808 0.93484 0.99334 1.21201 0.99208 1.03046 0.94929 1.17350 0.84361 0.92281 0.91881 1.91608 1.49709 1.84575 1.83754 1.21735 0.94007 0.99533 0.85051 1.21716 0.94182 1.01037 0.95732 0.90694 1.20704 0.97450 0.94074 0.84159 1.42790 1.66362 1.28560 1.02611 1.19034 1.28651 1.07849 0.81825 0.89185 1.24639 1.00552 0.98606 0.95116 1.69702 1.50875 1.40685 0.97015 0.86617 0.80894 0.84491 0.76993 1.20849 1.21698 1.20280 0.92741 0.91394 0.93051 0.90510 0.91346 0.90784 0.90574 0.83265 0.83326 0.83249 0.88365 0.90701 0.95390 0.94556 0.80546 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.82 37.15 0.33 -1.33 16 2 C -0.08 -0.98 2.23 -90.58 -0.20 -1.18 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.25 5.36 -26.61 -0.14 -1.40 16 5 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 6 N -0.60 -8.64 2.98 -174.26 -0.52 -9.16 16 7 C 0.56 9.19 6.43 -12.47 -0.08 9.11 16 8 O -0.51 -10.79 16.52 5.29 0.09 -10.70 16 9 C -0.19 -2.36 3.64 -104.86 -0.38 -2.75 16 10 C 0.16 1.66 7.29 -38.96 -0.28 1.38 16 11 F -0.12 -1.45 16.83 2.25 0.04 -1.41 16 12 C -0.17 -1.06 10.01 -39.56 -0.40 -1.46 16 13 C -0.05 -0.23 10.03 -39.53 -0.40 -0.63 16 14 C -0.16 -1.09 10.01 -39.57 -0.40 -1.49 16 15 C 0.16 1.72 7.14 -38.97 -0.28 1.44 16 16 F -0.12 -1.51 16.83 2.25 0.04 -1.47 16 17 C 0.12 1.95 5.49 -3.93 -0.02 1.93 16 18 C -0.11 -1.69 1.90 -90.72 -0.17 -1.86 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.17 5.41 -4.04 -0.02 3.15 16 21 N -0.76 -18.76 5.18 -59.91 -0.31 -19.07 16 22 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 23 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 25 N -0.93 -30.30 13.97 55.49 0.78 -29.52 16 26 Si 0.88 23.78 27.74 -169.99 -4.71 19.06 16 27 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 28 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 29 H -0.28 -7.25 6.52 56.52 0.37 -6.88 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.08 0.68 6.22 -51.93 -0.32 0.36 16 37 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.15 0.21 8.06 -52.48 -0.42 -0.22 16 39 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.10 1.99 6.20 -51.93 -0.32 1.67 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.04 0.70 6.14 -51.93 -0.32 0.39 16 44 H 0.36 9.08 4.75 -40.82 -0.19 8.88 16 45 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -36.48 370.27 -7.90 -44.38 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.15 Total: 3.52 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.72 Total: -1.20 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.05 Total: -57.75 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.71 Total: 19.06 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.48 -7.90 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.169 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds