Wall clock time and date at job start Tue Mar 31 2020 22:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46076 * 2 1 4 4 C 1.53034 * 109.46254 * 240.02932 * 2 1 3 5 5 C 1.53195 * 109.31603 * 178.63041 * 4 2 1 6 6 N 1.46927 * 108.77566 * 54.62988 * 5 4 2 7 7 C 1.34783 * 120.62624 * 126.37221 * 6 5 4 8 8 O 1.21582 * 119.99513 * 180.02562 * 7 6 5 9 9 C 1.47533 * 120.00111 * 0.02562 * 7 6 5 10 10 C 1.39906 * 120.18586 * 90.27371 * 9 7 6 11 11 F 1.35097 * 120.09977 * 0.02562 * 10 9 7 12 12 C 1.38223 * 119.80564 * 180.24717 * 10 9 7 13 13 C 1.38307 * 120.18807 * 359.47678 * 12 10 9 14 14 C 1.38304 * 120.38399 * 0.27716 * 13 12 10 15 15 C 1.38215 * 120.19270 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.10186 * 180.02562 * 15 14 13 17 17 C 1.46925 * 118.73795 * 306.64957 * 6 5 4 18 18 C 1.52758 * 109.00950 * 53.30957 * 17 6 5 19 19 H 1.09000 * 109.39058 * 65.50957 * 18 17 6 20 20 C 1.53005 * 109.56250 * 185.55084 * 18 17 6 21 21 N 1.46494 * 109.46924 * 294.96293 * 20 18 17 22 22 C 1.36946 * 119.99593 * 180.02562 * 21 20 18 23 23 H 1.07993 * 120.00142 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99700 * 180.02562 * 22 21 20 25 25 N 1.31616 * 119.99842 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00213 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47340 * 89.99922 * 26 24 22 28 28 H 1.48503 * 109.46738 * 210.00225 * 26 24 22 29 29 H 1.48500 * 109.46687 * 329.99494 * 26 24 22 30 30 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47449 * 299.97418 * 1 2 3 32 32 H 1.09006 * 109.46865 * 59.97181 * 1 2 3 33 33 H 1.09005 * 109.50058 * 58.67666 * 4 2 1 34 34 H 1.09005 * 109.52652 * 298.59499 * 4 2 1 35 35 H 1.09009 * 109.58455 * 294.84752 * 5 4 2 36 36 H 1.08995 * 109.70914 * 174.49715 * 5 4 2 37 37 H 1.08002 * 119.90899 * 179.75743 * 12 10 9 38 38 H 1.08003 * 119.81024 * 180.25511 * 13 12 10 39 39 H 1.08007 * 119.90553 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.58365 * 173.14210 * 17 6 5 41 41 H 1.08996 * 109.58601 * 293.56656 * 17 6 5 42 42 H 1.09001 * 109.47059 * 54.96421 * 20 18 17 43 43 H 1.09006 * 109.46574 * 174.96170 * 20 18 17 44 44 H 0.97000 * 120.00690 * 359.97438 * 21 20 18 45 45 H 0.97004 * 120.00349 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6890 -1.2639 6 7 4.0676 -1.2493 0.0004 7 6 4.9610 -2.2585 0.0005 8 8 5.3636 -2.7137 1.0535 9 6 5.4503 -2.8106 -1.2771 10 6 6.5925 -2.2760 -1.8830 11 9 7.2524 -1.2517 -1.2997 12 6 7.0411 -2.7960 -3.0826 13 6 6.3705 -3.8488 -3.6784 14 6 5.2437 -4.3866 -3.0837 15 6 4.7783 -3.8755 -1.8868 16 9 3.6776 -4.4026 -1.3072 17 6 3.5668 -0.6926 1.2645 18 6 2.0395 -0.7208 1.2502 19 1 1.6968 -1.7555 1.2386 20 6 1.5024 -0.0188 2.4990 21 7 1.8910 -0.7771 3.6907 22 6 1.5193 -0.3376 4.9333 23 1 0.9401 0.5682 5.0347 24 6 1.8880 -1.0559 6.0624 25 7 1.5304 -0.6337 7.2567 26 14 2.8917 -2.6216 5.8871 27 1 4.3385 -2.2895 5.9302 28 1 2.5629 -3.5476 7.0005 29 1 2.5714 -3.2722 4.5912 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6574 -0.2207 -2.1398 34 1 1.6976 -1.7557 -1.2388 35 1 3.9146 0.3405 -1.3670 36 1 3.9438 -1.2834 -2.0982 37 1 7.9203 -2.3820 -3.5538 38 1 6.7288 -4.2530 -4.6136 39 1 4.7258 -5.2084 -3.5559 40 1 3.9341 -1.2911 2.0982 41 1 3.9095 0.3365 1.3719 42 1 1.9176 0.9873 2.5572 43 1 0.4153 0.0394 2.4438 44 1 2.4109 -1.5910 3.5996 45 1 1.7883 -1.1354 8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133265884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:46 Heat of formation + Delta-G solvation = -109.800437 kcal Electronic energy + Delta-G solvation = -30367.935092 eV Core-core repulsion = 26020.602398 eV Total energy + Delta-G solvation = -4347.332694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.24136 -50.22225 -41.68610 -39.84768 -39.04951 -36.85832 -35.23749 -33.78231 -32.71581 -31.77631 -31.47906 -29.37166 -27.69670 -25.57474 -24.68315 -24.00742 -23.95687 -22.65312 -21.63493 -20.60042 -19.70929 -19.31574 -18.59194 -18.47762 -17.77279 -16.97890 -16.83058 -16.78744 -16.53246 -16.35816 -16.17262 -15.97116 -15.60857 -15.47664 -15.31453 -15.01331 -14.72523 -14.42120 -14.26344 -14.21818 -13.86285 -13.48372 -13.37535 -13.10557 -13.05042 -12.95233 -12.90585 -12.74342 -12.69001 -12.29414 -12.12511 -11.94163 -11.87770 -11.49331 -11.33993 -11.18867 -11.03746 -10.19251 -9.92221 -9.89897 -9.34520 -8.10830 -5.42048 -0.37735 -0.16253 1.12774 1.27177 1.31420 1.35705 1.68244 2.21425 2.38054 2.61494 3.06405 3.21398 3.23494 3.43908 3.66098 3.66380 3.69988 3.75555 3.88633 3.92913 4.09997 4.13519 4.24668 4.41759 4.49063 4.54481 4.60570 4.63846 4.68216 4.71745 4.84978 4.86765 4.88062 4.96603 5.00192 5.05234 5.09481 5.13433 5.16281 5.30371 5.42957 5.51295 5.60878 5.69839 6.08622 6.14703 6.75883 6.99907 7.77434 7.93874 9.10874 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003681 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.046102 B = 7605.733315 C = 8528.948439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.089 0.911 4 C -0.119 4.119 5 C 0.101 3.899 6 N -0.594 5.594 7 C 0.552 3.448 8 O -0.581 6.581 9 C -0.216 4.216 10 C 0.138 3.862 11 F -0.139 7.139 12 C -0.146 4.146 13 C -0.023 4.023 14 C -0.147 4.147 15 C 0.135 3.865 16 F -0.141 7.141 17 C 0.119 3.881 18 C -0.093 4.093 19 H 0.055 0.945 20 C 0.160 3.840 21 N -0.764 5.764 22 C -0.228 4.228 23 H 0.068 0.932 24 C -0.053 4.053 25 N -0.977 5.977 26 Si 0.940 3.060 27 H -0.286 1.286 28 H -0.286 1.286 29 H -0.270 1.270 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.182 0.818 38 H 0.200 0.800 39 H 0.179 0.821 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.043 0.957 44 H 0.359 0.641 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -3.991 -36.555 37.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 H 0.107 0.893 4 C -0.157 4.157 5 C -0.020 4.020 6 N -0.324 5.324 7 C 0.339 3.661 8 O -0.461 6.461 9 C -0.221 4.221 10 C 0.118 3.882 11 F -0.117 7.117 12 C -0.165 4.165 13 C -0.041 4.041 14 C -0.166 4.166 15 C 0.115 3.885 16 F -0.119 7.119 17 C -0.003 4.003 18 C -0.113 4.113 19 H 0.073 0.927 20 C 0.034 3.966 21 N -0.409 5.409 22 C -0.359 4.359 23 H 0.086 0.914 24 C -0.245 4.245 25 N -0.628 5.628 26 Si 0.768 3.232 27 H -0.213 1.213 28 H -0.212 1.212 29 H -0.196 1.196 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.199 0.801 38 H 0.217 0.783 39 H 0.197 0.803 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.192 0.808 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.508 -4.030 -35.816 37.033 hybrid contribution 0.393 -0.848 1.809 2.036 sum 8.901 -4.878 -34.007 35.490 Atomic orbital electron populations 1.21855 0.93893 1.01838 1.02659 1.21087 0.96752 0.99767 0.92068 0.89285 1.21965 0.93360 1.01395 0.98992 1.22123 0.95608 1.00457 0.83830 1.48252 1.41320 1.33845 1.09020 1.18573 0.79142 0.79595 0.88762 1.90818 1.59449 1.61297 1.34554 1.19811 1.01202 1.03112 0.97965 1.17699 0.90096 0.87032 0.93398 1.91541 1.79255 1.56617 1.84312 1.21634 1.03330 0.98773 0.92730 1.21614 0.90835 0.91534 1.00092 1.21626 0.99297 1.02848 0.92824 1.17740 0.84489 0.92723 0.93522 1.91548 1.50953 1.84934 1.84496 1.21505 0.94533 0.99017 0.85244 1.21569 0.93444 1.00048 0.96227 0.92662 1.20928 0.97883 0.94003 0.83788 1.42911 1.66201 1.28929 1.02854 1.19090 1.26722 1.06511 0.83597 0.91394 1.25275 1.02465 1.01746 0.94992 1.69829 1.52958 1.42312 0.97744 0.85652 0.79039 0.81290 0.77169 1.21277 1.21182 1.19568 0.93449 0.93018 0.90007 0.86543 0.92413 0.88836 0.88679 0.80116 0.78274 0.80321 0.92848 0.89966 0.94888 0.93906 0.80841 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.82 71.98 0.63 -2.32 16 2 C -0.08 -1.68 2.23 -10.77 -0.02 -1.71 16 3 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.12 -2.00 5.36 30.67 0.16 -1.83 16 5 C 0.10 1.89 6.34 86.36 0.55 2.43 16 6 N -0.59 -17.60 2.98 -823.49 -2.45 -20.05 16 7 C 0.55 19.04 6.43 86.69 0.56 19.60 16 8 O -0.58 -26.52 16.52 -3.97 -0.07 -26.59 16 9 C -0.22 -5.33 3.64 -20.02 -0.07 -5.40 16 10 C 0.14 2.65 7.29 22.67 0.17 2.82 16 11 F -0.14 -3.34 16.83 44.97 0.76 -2.58 16 12 C -0.15 -1.25 10.01 22.28 0.22 -1.03 16 13 C -0.02 -0.09 10.03 22.30 0.22 0.13 16 14 C -0.15 -1.35 10.01 22.28 0.22 -1.12 16 15 C 0.14 2.71 7.14 22.67 0.16 2.87 16 16 F -0.14 -3.64 16.83 44.97 0.76 -2.88 16 17 C 0.12 4.14 5.49 86.22 0.47 4.61 16 18 C -0.09 -2.99 1.90 -10.86 -0.02 -3.01 16 19 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 20 C 0.16 6.32 5.41 86.38 0.47 6.79 16 21 N -0.76 -39.07 5.18 -343.45 -1.78 -40.85 16 22 C -0.23 -13.79 10.47 84.03 0.88 -12.91 16 23 H 0.07 4.35 8.06 -2.91 -0.02 4.33 16 24 C -0.05 -3.32 5.50 84.86 0.47 -2.85 16 25 N -0.98 -65.35 13.97 21.65 0.30 -65.05 16 26 Si 0.94 51.15 27.74 68.60 1.90 53.05 16 27 H -0.29 -15.65 7.11 99.48 0.71 -14.94 16 28 H -0.29 -15.22 7.11 99.48 0.71 -14.52 16 29 H -0.27 -14.21 6.52 99.48 0.65 -13.56 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.22 6.29 -2.39 -0.02 1.20 16 32 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.09 1.47 6.22 -2.39 -0.01 1.46 16 37 H 0.18 0.43 8.06 -2.91 -0.02 0.40 16 38 H 0.20 -1.09 8.06 -2.91 -0.02 -1.12 16 39 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.05 2.34 6.20 -2.39 -0.01 2.32 16 41 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 1.67 6.14 -2.38 -0.01 1.66 16 44 H 0.36 18.73 4.75 -92.71 -0.44 18.29 16 45 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -87.65 370.27 5.02 -82.63 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.52 Total: 15.23 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 5.07 Total: 7.09 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -3.93 Total: -125.94 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.07 Total: -26.59 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 1.51 Total: -5.46 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.90 Total: 53.05 kcal Total: -87.65 5.02 -82.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133265884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.171 kcal (2) G-P(sol) polarization free energy of solvation -87.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds