Wall clock time and date at job start Tue Mar 31 2020 22:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08992 * 109.46202 * 2 1 4 4 C 1.53073 * 109.33362 * 240.10984 * 2 1 3 5 5 C 1.53197 * 109.29903 * 301.13537 * 4 2 1 6 6 N 1.46921 * 108.89031 * 305.58168 * 5 4 2 7 7 C 1.34783 * 120.62821 * 233.51205 * 6 5 4 8 8 O 1.21582 * 119.99996 * 175.77024 * 7 6 5 9 9 C 1.47566 * 119.99864 * 355.76374 * 7 6 5 10 10 C 1.39731 * 120.14402 * 320.98658 * 9 7 6 11 11 C 1.37745 * 119.90296 * 179.97438 * 10 9 7 12 12 C 1.38757 * 120.19194 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.85669 * 179.97438 * 12 11 10 14 14 C 1.38497 * 120.28449 * 359.97438 * 12 11 10 15 15 C 1.38197 * 120.09416 * 359.73804 * 14 12 11 16 16 F 1.35101 * 120.09454 * 180.27669 * 15 14 12 17 17 C 1.46925 * 118.74428 * 53.53507 * 6 5 4 18 18 C 1.53037 * 109.45931 * 119.97603 * 2 1 3 19 19 H 1.09000 * 109.50045 * 178.59359 * 18 2 1 20 20 C 1.53009 * 109.52372 * 298.66924 * 18 2 1 21 21 N 1.46494 * 109.47185 * 184.85516 * 20 18 2 22 22 C 1.36943 * 119.99743 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99828 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99534 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00486 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99508 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47403 * 89.99727 * 26 24 22 28 28 H 1.48503 * 109.47225 * 209.99887 * 26 24 22 29 29 H 1.48507 * 109.47303 * 329.99718 * 26 24 22 30 30 H 1.09004 * 109.47452 * 300.02784 * 1 2 3 31 31 H 1.09006 * 109.47482 * 60.02995 * 1 2 3 32 32 H 1.09006 * 109.47476 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.38865 * 181.26032 * 4 2 1 34 34 H 1.09003 * 109.62350 * 61.15509 * 4 2 1 35 35 H 1.08996 * 109.58792 * 185.71693 * 5 4 2 36 36 H 1.09002 * 109.58201 * 65.43496 * 5 4 2 37 37 H 1.07992 * 120.04748 * 359.95055 * 10 9 7 38 38 H 1.07995 * 119.90035 * 179.97438 * 11 10 9 39 39 H 1.07998 * 119.95054 * 180.02562 * 14 12 11 40 40 H 1.08999 * 109.58609 * 66.17645 * 17 6 5 41 41 H 1.09000 * 109.59246 * 186.45827 * 17 6 5 42 42 H 1.08995 * 109.46834 * 304.85745 * 20 18 2 43 43 H 1.08997 * 109.46453 * 64.85464 * 20 18 2 44 44 H 0.96997 * 120.00432 * 0.02562 * 21 20 18 45 45 H 0.97002 * 119.99700 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0276 0.0000 4 6 2.0367 -0.7198 -1.2523 5 6 1.4989 -2.1542 -1.2643 6 7 1.8618 -2.8089 -0.0001 7 6 2.5147 -3.9881 -0.0002 8 8 2.8774 -4.4822 1.0497 9 6 2.7891 -4.6794 -1.2748 10 6 1.8317 -4.6810 -2.2925 11 6 2.0932 -5.3274 -3.4804 12 6 3.3046 -5.9774 -3.6691 13 9 3.5538 -6.6097 -4.8367 14 6 4.2592 -5.9807 -2.6657 15 6 4.0115 -5.3309 -1.4715 16 9 4.9449 -5.3294 -0.4948 17 6 1.4992 -2.1543 1.2642 18 6 2.0397 -0.7210 1.2499 19 1 3.1294 -0.7432 1.2381 20 6 1.5577 0.0191 2.4994 21 7 2.1408 -0.6030 3.6907 22 6 1.8497 -0.1076 4.9338 23 1 1.1907 0.7419 5.0358 24 6 2.4026 -0.6967 6.0626 25 7 3.2062 -1.7317 5.9382 26 14 2.0050 -0.0214 7.7582 27 1 0.8016 -0.7067 8.2943 28 1 3.1552 -0.2576 8.6673 29 1 1.7421 1.4369 7.6612 30 1 -0.3634 0.5143 0.8898 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 3.1265 -0.7400 -1.2420 34 1 1.6905 -0.1940 -2.1421 35 1 1.9372 -2.7018 -2.0986 36 1 0.4140 -2.1367 -1.3685 37 1 0.8878 -4.1766 -2.1477 38 1 1.3530 -5.3290 -4.2667 39 1 5.2003 -6.4879 -2.8185 40 1 0.4143 -2.1346 1.3674 41 1 1.9356 -2.7034 2.0985 42 1 1.8677 1.0626 2.4458 43 1 0.4706 -0.0346 2.5566 44 1 2.7330 -1.3657 3.5991 45 1 3.5922 -2.1436 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133278202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:49 Heat of formation + Delta-G solvation = -102.760289 kcal Electronic energy + Delta-G solvation = -29840.347985 eV Core-core repulsion = 25493.320574 eV Total energy + Delta-G solvation = -4347.027411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.19001 -50.11924 -41.82478 -39.86742 -38.92955 -36.67659 -35.02416 -33.51696 -32.52051 -31.77747 -31.23823 -28.71016 -27.34872 -26.17992 -25.04522 -24.39280 -24.07671 -22.58757 -21.41555 -19.79025 -19.27367 -18.91071 -18.61077 -18.19925 -17.41409 -17.04438 -16.81556 -16.79708 -16.46623 -16.32834 -16.07968 -15.75692 -15.65181 -15.46353 -15.34533 -14.92359 -14.63954 -14.55368 -14.15531 -14.06472 -13.79817 -13.50163 -13.28317 -13.05707 -12.85665 -12.77477 -12.66674 -12.52810 -12.41009 -12.13429 -12.02140 -11.91073 -11.71516 -11.41069 -11.23958 -11.01532 -10.93646 -10.18223 -9.97013 -9.61561 -9.01738 -7.95233 -5.26126 -0.55514 -0.14139 1.43915 1.46219 1.47338 1.55715 1.80464 2.28442 2.54513 2.67154 3.15736 3.27447 3.37578 3.45221 3.68429 3.78638 3.79834 3.85464 3.96575 4.08043 4.16929 4.27370 4.37811 4.51979 4.56101 4.57992 4.59559 4.68873 4.74056 4.77343 4.83717 4.85239 4.91934 4.92382 5.00917 5.10821 5.19021 5.26582 5.32111 5.41765 5.46205 5.48655 5.56133 5.63467 6.24917 6.28941 6.99658 7.30137 8.07191 8.28883 9.28277 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.002927 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.638893 B = 9564.156366 C =10894.984798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.084 3.916 6 N -0.594 5.594 7 C 0.545 3.455 8 O -0.582 6.582 9 C -0.188 4.188 10 C -0.021 4.021 11 C -0.145 4.145 12 C 0.155 3.845 13 F -0.124 7.124 14 C -0.196 4.196 15 C 0.151 3.849 16 F -0.140 7.140 17 C 0.129 3.871 18 C -0.091 4.091 19 H 0.043 0.957 20 C 0.160 3.840 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.184 0.816 38 H 0.192 0.808 39 H 0.166 0.834 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.369 0.631 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 -3.380 -30.321 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.162 4.162 5 C -0.036 4.036 6 N -0.326 5.326 7 C 0.334 3.666 8 O -0.462 6.462 9 C -0.192 4.192 10 C -0.039 4.039 11 C -0.163 4.163 12 C 0.135 3.865 13 F -0.103 7.103 14 C -0.215 4.215 15 C 0.131 3.869 16 F -0.118 7.118 17 C 0.006 3.994 18 C -0.111 4.111 19 H 0.061 0.939 20 C 0.034 3.966 21 N -0.392 5.392 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.189 1.189 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.201 0.799 38 H 0.210 0.790 39 H 0.184 0.816 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.708 -3.503 -29.676 30.625 hybrid contribution 1.157 -0.372 1.970 2.315 sum -5.551 -3.875 -27.706 28.521 Atomic orbital electron populations 1.21969 0.93465 1.02433 1.02721 1.21075 0.97344 0.99174 0.92290 0.90400 1.21979 1.00459 0.95050 0.98732 1.22669 1.02666 0.93844 0.84467 1.48100 1.55985 1.19710 1.08773 1.18633 0.77642 0.81647 0.88673 1.90882 1.53034 1.67327 1.34991 1.20023 0.96699 1.05904 0.96573 1.21498 0.98466 0.94570 0.89335 1.21531 0.96564 0.98425 0.99820 1.17582 0.94240 0.93470 0.81212 1.91575 1.94498 1.79369 1.44821 1.21087 1.03476 1.04988 0.91974 1.17634 0.86033 0.97273 0.86008 1.91563 1.64137 1.94367 1.61759 1.21445 1.00003 0.92622 0.85286 1.21554 0.99052 0.94339 0.96144 0.93885 1.20873 0.96167 0.94700 0.84905 1.42721 1.57054 1.37345 1.02125 1.19678 1.22392 1.10602 0.84936 0.90134 1.25692 1.00563 0.99014 1.02082 1.69885 1.37358 1.26038 1.29142 0.85076 0.76622 0.78301 0.79367 1.21266 1.22445 1.18910 0.93461 0.89724 0.92103 0.93068 0.86370 0.86891 0.87299 0.79877 0.79041 0.81646 0.89784 0.93554 0.95963 0.94740 0.79967 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.11 71.98 0.58 -1.96 16 2 C -0.08 -1.68 2.71 -10.76 -0.03 -1.71 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.88 5.63 30.68 0.17 -1.71 16 5 C 0.08 1.21 4.39 86.37 0.38 1.59 16 6 N -0.59 -16.13 2.97 -822.63 -2.45 -18.58 16 7 C 0.54 17.97 7.20 86.70 0.62 18.60 16 8 O -0.58 -26.91 15.65 -3.97 -0.06 -26.98 16 9 C -0.19 -4.35 5.21 -20.05 -0.10 -4.45 16 10 C -0.02 -0.24 7.34 22.51 0.17 -0.07 16 11 C -0.15 -1.14 10.01 22.28 0.22 -0.91 16 12 C 0.15 1.93 7.30 22.46 0.16 2.10 16 13 F -0.12 -1.57 17.26 44.97 0.78 -0.79 16 14 C -0.20 -3.35 9.99 22.32 0.22 -3.12 16 15 C 0.15 3.75 7.24 22.66 0.16 3.92 16 16 F -0.14 -4.67 16.23 44.97 0.73 -3.94 16 17 C 0.13 4.45 5.06 86.36 0.44 4.88 16 18 C -0.09 -3.01 2.15 -10.71 -0.02 -3.03 16 19 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 20 C 0.16 6.49 5.19 86.38 0.45 6.94 16 21 N -0.75 -40.72 5.38 -343.45 -1.85 -42.57 16 22 C -0.24 -14.30 9.99 84.03 0.84 -13.46 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 24 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 25 N -0.97 -64.36 13.06 21.65 0.28 -64.08 16 26 Si 0.98 48.32 29.55 68.60 2.03 50.34 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 29 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 30 H 0.05 0.98 6.58 -2.38 -0.02 0.97 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.00 4.98 -2.38 -0.01 0.99 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 1.11 4.53 -2.39 -0.01 1.10 16 36 H 0.11 0.93 6.67 -2.39 -0.02 0.92 16 37 H 0.18 1.02 6.36 -2.91 -0.02 1.00 16 38 H 0.19 0.02 8.06 -2.91 -0.02 -0.01 16 39 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.08 2.63 6.69 -2.39 -0.02 2.61 16 41 H 0.05 2.16 6.20 -2.39 -0.01 2.15 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.03 1.34 6.73 -2.39 -0.02 1.33 16 44 H 0.37 22.22 6.90 -92.71 -0.64 21.58 16 45 H 0.25 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -85.34 361.18 4.60 -80.74 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.40 Total: 22.78 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 4.73 Total: 3.08 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -4.01 Total: -125.23 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.06 Total: -26.98 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.51 Total: -4.73 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.34 kcal Total: -85.34 4.60 -80.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.023 kcal (2) G-P(sol) polarization free energy of solvation -85.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds