Wall clock time and date at job start Tue Mar 31 2020 22:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08989 * 109.46121 * 2 1 4 4 C 1.53038 * 109.44820 * 119.96558 * 2 1 3 5 5 C 1.53195 * 109.31361 * 58.64795 * 4 2 1 6 6 N 1.46921 * 108.77733 * 54.63126 * 5 4 2 7 7 C 1.34777 * 120.62650 * 126.41132 * 6 5 4 8 8 O 1.21590 * 120.00038 * 175.81036 * 7 6 5 9 9 C 1.47569 * 120.00441 * 355.81589 * 7 6 5 10 10 C 1.39728 * 120.14163 * 54.19668 * 9 7 6 11 11 C 1.37739 * 119.90387 * 179.77461 * 10 9 7 12 12 C 1.38758 * 120.19116 * 0.50382 * 11 10 9 13 13 F 1.35097 * 119.85392 * 179.76662 * 12 11 10 14 14 C 1.38490 * 120.28646 * 359.74591 * 12 11 10 15 15 C 1.38203 * 120.09172 * 0.02562 * 14 12 11 16 16 F 1.35095 * 120.09239 * 179.97438 * 15 14 12 17 17 C 1.46925 * 118.74299 * 306.40109 * 6 5 4 18 18 C 1.53047 * 109.45882 * 240.02596 * 2 1 3 19 19 H 1.09001 * 109.49351 * 181.41441 * 18 2 1 20 20 C 1.52997 * 109.49904 * 61.34423 * 18 2 1 21 21 N 1.46494 * 109.46783 * 175.06157 * 20 18 2 22 22 C 1.36944 * 119.99871 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99690 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00243 * 180.02562 * 22 21 20 25 25 N 1.31615 * 119.99836 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99885 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47025 * 90.00085 * 26 24 22 28 28 H 1.48496 * 109.47280 * 209.99834 * 26 24 22 29 29 H 1.48494 * 109.47465 * 330.00273 * 26 24 22 30 30 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47457 * 299.97675 * 1 2 3 32 32 H 1.09006 * 109.46613 * 59.97628 * 1 2 3 33 33 H 1.08997 * 109.50121 * 178.59364 * 4 2 1 34 34 H 1.08998 * 109.49812 * 298.69761 * 4 2 1 35 35 H 1.08999 * 109.59167 * 174.42486 * 5 4 2 36 36 H 1.09009 * 109.58650 * 294.70661 * 5 4 2 37 37 H 1.08007 * 120.04485 * 359.97438 * 10 9 7 38 38 H 1.08005 * 119.90156 * 180.27625 * 11 10 9 39 39 H 1.07997 * 119.95743 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.58086 * 293.81320 * 17 6 5 41 41 H 1.08999 * 109.58637 * 173.39622 * 17 6 5 42 42 H 1.09000 * 109.47179 * 295.06734 * 20 18 2 43 43 H 1.09000 * 109.46895 * 55.06334 * 20 18 2 44 44 H 0.96995 * 120.00883 * 0.02562 * 21 20 18 45 45 H 0.96996 * 120.00247 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0276 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4989 -2.1541 1.2644 6 7 1.8618 -2.8090 0.0002 7 6 2.5147 -3.9880 0.0004 8 8 2.7421 -4.5572 -1.0497 9 6 2.9534 -4.5884 1.2751 10 6 2.0329 -4.7992 2.3049 11 6 2.4469 -5.3642 3.4909 12 6 3.7774 -5.7150 3.6698 13 9 4.1769 -6.2644 4.8376 14 6 4.6975 -5.5048 2.6563 15 6 4.2941 -4.9430 1.4598 16 9 5.1917 -4.7374 0.4713 17 6 1.4993 -2.1542 -1.2642 18 6 2.0398 -0.7210 -1.2500 19 1 3.1295 -0.7433 -1.2380 20 6 1.5578 0.0197 -2.4990 21 7 2.1422 -0.6008 -3.6905 22 6 1.8523 -0.1039 -4.9333 23 1 1.1924 0.7450 -5.0349 24 6 2.4055 -0.6921 -6.0624 25 7 3.2092 -1.7270 -5.9385 26 14 2.0094 -0.0148 -7.7575 27 1 3.0028 1.0283 -8.1184 28 1 2.0617 -1.1141 -8.7545 29 1 0.6488 0.5800 -7.7475 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8898 33 1 3.1292 -0.7432 1.2385 34 1 1.6954 -0.1934 2.1398 35 1 1.9373 -2.7018 2.0986 36 1 0.4141 -2.1345 1.3699 37 1 0.9977 -4.5226 2.1699 38 1 1.7344 -5.5313 4.2853 39 1 5.7317 -5.7802 2.8012 40 1 0.4143 -2.1346 -1.3674 41 1 1.9378 -2.7021 -2.0982 42 1 0.4708 -0.0349 -2.5570 43 1 1.8668 1.0635 -2.4443 44 1 2.7345 -1.3634 -3.5993 45 1 3.5955 -2.1383 -6.7274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133278203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:51 Heat of formation + Delta-G solvation = -106.979643 kcal Electronic energy + Delta-G solvation = -29872.995100 eV Core-core repulsion = 25525.784725 eV Total energy + Delta-G solvation = -4347.210376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.22617 -50.11160 -41.79464 -39.89219 -38.93313 -36.66760 -34.99227 -33.52007 -32.49015 -31.80851 -31.26517 -28.71083 -27.36255 -26.14420 -24.99567 -24.43887 -24.11394 -22.59197 -21.40674 -19.76901 -19.27593 -18.92518 -18.60605 -18.26635 -17.48943 -17.03319 -16.85995 -16.80006 -16.45049 -16.30392 -16.08257 -15.76611 -15.67014 -15.47645 -15.32389 -14.99372 -14.62784 -14.56018 -14.18117 -14.00955 -13.79856 -13.51966 -13.30764 -13.05314 -12.87819 -12.77460 -12.65247 -12.56281 -12.43979 -12.16435 -12.02176 -11.91490 -11.74229 -11.42786 -11.24503 -11.04291 -10.94164 -10.20710 -9.94767 -9.64509 -9.01960 -7.95440 -5.26277 -0.49852 -0.14447 1.37591 1.43944 1.47241 1.55768 1.80332 2.22885 2.54448 2.66937 3.15054 3.25864 3.37454 3.46860 3.67553 3.78480 3.79824 3.84666 3.98254 4.06994 4.16219 4.27134 4.37529 4.51603 4.55955 4.57137 4.59447 4.69096 4.73869 4.76895 4.82567 4.85299 4.91397 4.93060 4.99836 5.10368 5.18058 5.25620 5.31015 5.40287 5.45456 5.48155 5.55803 5.62544 6.24751 6.27132 6.96443 7.30004 8.06843 8.28589 9.28129 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016220 B = 0.002950 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.850622 B = 9489.951871 C =10712.735164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.124 4.124 5 C 0.089 3.911 6 N -0.594 5.594 7 C 0.548 3.452 8 O -0.581 6.581 9 C -0.181 4.181 10 C -0.021 4.021 11 C -0.142 4.142 12 C 0.151 3.849 13 F -0.125 7.125 14 C -0.192 4.192 15 C 0.145 3.855 16 F -0.143 7.143 17 C 0.129 3.871 18 C -0.091 4.091 19 H 0.044 0.956 20 C 0.160 3.840 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.264 1.264 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.369 0.631 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 -3.297 30.248 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.162 4.162 5 C -0.031 4.031 6 N -0.325 5.325 7 C 0.336 3.664 8 O -0.461 6.461 9 C -0.186 4.186 10 C -0.039 4.039 11 C -0.160 4.160 12 C 0.131 3.869 13 F -0.103 7.103 14 C -0.211 4.211 15 C 0.125 3.875 16 F -0.121 7.121 17 C 0.007 3.993 18 C -0.111 4.111 19 H 0.062 0.938 20 C 0.034 3.966 21 N -0.392 5.392 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.189 1.189 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.198 0.802 38 H 0.208 0.792 39 H 0.184 0.816 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.844 -3.457 29.602 30.371 hybrid contribution 1.157 -0.247 -1.959 2.288 sum -4.687 -3.704 27.644 28.282 Atomic orbital electron populations 1.21961 0.93510 1.02379 1.02717 1.21073 0.97297 0.99209 0.92279 0.90309 1.21959 1.00443 0.95046 0.98754 1.22466 1.02563 0.93797 0.84306 1.48145 1.55754 1.19749 1.08813 1.18628 0.77631 0.81463 0.88632 1.90875 1.57456 1.62892 1.34926 1.19986 0.94008 1.08182 0.96386 1.21339 1.00087 0.93347 0.89176 1.21509 0.94297 1.00389 0.99794 1.17554 0.93082 0.94988 0.81244 1.91573 1.91405 1.82502 1.44834 1.21075 1.03188 1.05125 0.91728 1.17583 0.85690 0.98393 0.85850 1.91555 1.67124 1.92458 1.60973 1.21446 1.00074 0.92598 0.85211 1.21563 0.99104 0.94263 0.96174 0.93761 1.20871 0.96149 0.94743 0.84869 1.42715 1.57035 1.37340 1.02144 1.19678 1.22431 1.10566 0.84942 0.90138 1.25689 1.00608 0.98962 1.02074 1.69877 1.37378 1.26003 1.29160 0.85073 0.78266 0.76772 0.79255 1.21297 1.22454 1.18872 0.92205 0.89772 0.93400 0.92984 0.86527 0.87281 0.87558 0.80209 0.79151 0.81636 0.89912 0.93557 0.94783 0.95868 0.79979 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.11 71.98 0.58 -2.02 16 2 C -0.08 -1.70 2.71 -10.77 -0.03 -1.73 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -1.93 5.62 30.67 0.17 -1.76 16 5 C 0.09 1.34 5.05 86.36 0.44 1.78 16 6 N -0.59 -16.30 2.97 -822.62 -2.44 -18.74 16 7 C 0.55 18.03 6.91 86.71 0.60 18.63 16 8 O -0.58 -26.68 16.30 -4.00 -0.07 -26.75 16 9 C -0.18 -4.21 4.89 -20.05 -0.10 -4.31 16 10 C -0.02 -0.25 7.42 22.51 0.17 -0.09 16 11 C -0.14 -1.15 10.01 22.28 0.22 -0.93 16 12 C 0.15 1.91 7.30 22.45 0.16 2.08 16 13 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 14 C -0.19 -3.29 9.99 22.32 0.22 -3.06 16 15 C 0.15 3.59 7.27 22.66 0.16 3.76 16 16 F -0.14 -4.72 16.66 44.97 0.75 -3.97 16 17 C 0.13 4.49 5.04 86.36 0.44 4.93 16 18 C -0.09 -3.02 2.15 -10.72 -0.02 -3.05 16 19 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 20 C 0.16 6.50 5.19 86.38 0.45 6.95 16 21 N -0.75 -40.68 5.38 -343.46 -1.85 -42.53 16 22 C -0.24 -14.30 9.99 84.03 0.84 -13.46 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 24 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 25 N -0.97 -64.26 13.06 21.65 0.28 -63.98 16 26 Si 0.98 48.30 29.55 68.60 2.03 50.32 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 29 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 30 H 0.06 1.02 4.98 -2.39 -0.01 1.01 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.01 6.58 -2.38 -0.02 0.99 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.15 4.73 -2.39 -0.01 1.14 16 36 H 0.11 1.04 6.70 -2.38 -0.02 1.02 16 37 H 0.18 1.09 7.36 -2.91 -0.02 1.07 16 38 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 39 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.08 2.63 6.69 -2.39 -0.02 2.62 16 41 H 0.05 2.16 6.23 -2.39 -0.01 2.15 16 42 H 0.03 1.33 6.73 -2.39 -0.02 1.31 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.37 22.16 6.90 -92.71 -0.64 21.52 16 45 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -84.58 363.67 4.65 -79.93 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.40 Total: 23.30 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.77 Total: 3.23 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -4.01 Total: -125.25 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 1.53 Total: -4.79 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -84.58 4.65 -79.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.050 kcal (2) G-P(sol) polarization free energy of solvation -84.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds