Wall clock time and date at job start Tue Mar 31 2020 22:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.44925 * 2 1 4 4 C 1.53039 * 109.45877 * 119.96182 * 2 1 3 5 5 C 1.52762 * 109.38462 * 181.26195 * 4 2 1 6 6 N 1.46921 * 109.00729 * 305.59038 * 5 4 2 7 7 C 1.34778 * 120.62953 * 233.58360 * 6 5 4 8 8 O 1.21586 * 120.00279 * 183.93376 * 7 6 5 9 9 C 1.47570 * 119.99833 * 3.93122 * 7 6 5 10 10 C 1.39734 * 120.14340 * 305.93717 * 9 7 6 11 11 C 1.37740 * 119.90636 * 179.97438 * 10 9 7 12 12 C 1.38760 * 120.19002 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.85587 * 180.02562 * 12 11 10 14 14 C 1.38497 * 120.28301 * 359.77083 * 12 11 10 15 15 C 1.38187 * 120.09510 * 0.50597 * 14 12 11 16 16 F 1.35104 * 120.09866 * 179.74823 * 15 14 12 17 17 C 1.46924 * 118.74345 * 53.30985 * 6 5 4 18 18 C 1.53037 * 109.46246 * 240.03025 * 2 1 3 19 19 H 1.08998 * 109.49696 * 298.56814 * 18 2 1 20 20 C 1.53001 * 109.52513 * 58.64905 * 18 2 1 21 21 N 1.46500 * 109.47176 * 184.85610 * 20 18 2 22 22 C 1.36934 * 119.99727 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00262 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00001 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99781 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00249 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46959 * 89.99825 * 26 24 22 28 28 H 1.48495 * 109.47093 * 210.00043 * 26 24 22 29 29 H 1.48499 * 109.47249 * 329.99982 * 26 24 22 30 30 H 1.08996 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47405 * 299.97046 * 1 2 3 32 32 H 1.09005 * 109.46824 * 59.97150 * 1 2 3 33 33 H 1.08998 * 109.50059 * 301.33892 * 4 2 1 34 34 H 1.08995 * 109.49861 * 61.40098 * 4 2 1 35 35 H 1.09000 * 109.50998 * 185.70364 * 5 4 2 36 36 H 1.08996 * 109.43202 * 65.42497 * 5 4 2 37 37 H 1.07997 * 120.04642 * 0.02562 * 10 9 7 38 38 H 1.07993 * 119.90216 * 180.02562 * 11 10 9 39 39 H 1.08009 * 119.95056 * 180.28025 * 14 12 11 40 40 H 1.08998 * 109.58638 * 66.42710 * 17 6 5 41 41 H 1.08997 * 109.59081 * 186.85762 * 17 6 5 42 42 H 1.09004 * 109.46886 * 304.85485 * 20 18 2 43 43 H 1.08999 * 109.46970 * 64.85079 * 20 18 2 44 44 H 0.97000 * 120.00114 * 359.97438 * 21 20 18 45 45 H 0.96993 * 119.99932 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5671 -0.6922 1.2644 6 7 4.0679 -1.2487 0.0002 7 6 4.9614 -2.2577 0.0003 8 8 5.4223 -2.6618 -1.0498 9 6 5.3805 -2.8721 1.2749 10 6 5.8836 -2.0747 2.3062 11 6 6.2727 -2.6532 3.4941 12 6 6.1662 -4.0255 3.6698 13 9 6.5494 -4.5857 4.8379 14 6 5.6637 -4.8226 2.6548 15 6 5.2751 -4.2553 1.4562 16 9 4.7897 -5.0335 0.4641 17 6 3.5715 -0.6886 -1.2641 18 6 2.0399 -0.7208 -1.2500 19 1 1.6979 -1.7557 -1.2382 20 6 1.5029 -0.0197 -2.4994 21 7 1.8952 -0.7766 -3.6908 22 6 1.5252 -0.3371 -4.9337 23 1 0.9439 0.5674 -5.0358 24 6 1.8973 -1.0540 -6.0627 25 7 2.6062 -2.1560 -5.9384 26 14 1.3920 -0.4548 -7.7583 27 1 2.4378 0.4531 -8.2943 28 1 1.2330 -1.6181 -8.6673 29 1 0.1036 0.2771 -7.6610 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6572 -0.2206 2.1399 34 1 1.6973 -1.7553 1.2387 35 1 3.9346 -1.2906 2.0981 36 1 3.9097 0.3369 1.3716 37 1 5.9663 -1.0063 2.1724 38 1 6.6612 -2.0368 4.2913 39 1 5.5789 -5.8897 2.7990 40 1 3.9144 0.3409 -1.3672 41 1 3.9418 -1.2846 -2.0982 42 1 0.4156 0.0357 -2.4458 43 1 1.9157 0.9875 -2.5565 44 1 2.4176 -1.5888 -3.5992 45 1 2.8666 -2.6567 -6.7272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133278204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:55 Heat of formation + Delta-G solvation = -87.481629 kcal Electronic energy + Delta-G solvation = -29732.654521 eV Core-core repulsion = 25386.289642 eV Total energy + Delta-G solvation = -4346.364878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.47600 -49.23095 -40.63979 -38.87216 -37.74556 -35.03426 -33.74469 -32.06521 -31.52824 -31.00092 -29.77943 -28.17610 -25.74065 -24.51137 -23.57247 -23.14422 -22.84733 -21.25307 -20.30055 -19.41283 -18.52094 -17.78023 -17.44440 -16.96910 -16.49147 -16.11621 -16.04902 -15.56502 -15.08322 -14.98501 -14.85548 -14.77467 -14.44413 -14.29303 -13.92107 -13.67132 -13.45864 -13.14348 -13.04866 -12.75910 -12.64189 -12.49905 -12.34282 -11.96697 -11.85647 -11.73727 -11.50501 -10.99356 -10.89011 -10.79793 -10.62787 -10.30455 -10.18860 -10.01722 -9.83426 -9.59238 -9.48566 -9.14831 -8.82726 -8.56797 -6.85760 -5.68852 -2.98749 0.26047 0.53296 2.45881 2.77588 3.08840 3.39232 3.47761 3.52146 3.54578 3.90672 4.08309 4.17228 4.36381 4.59207 4.63927 4.67794 4.81705 4.85626 5.09704 5.18323 5.24216 5.27565 5.33908 5.41007 5.49012 5.55342 5.61596 5.62454 5.66412 5.69461 5.79128 5.89447 5.93276 6.01165 6.15877 6.21215 6.22789 6.31718 6.43640 6.54372 6.58931 6.81044 6.89304 7.36415 7.75034 8.11630 8.48708 9.59608 10.17637 10.51567 11.53385 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002927 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.903485 B = 9564.093466 C =10731.141264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.129 4.129 5 C 0.098 3.902 6 N -0.601 5.601 7 C 0.556 3.444 8 O -0.510 6.510 9 C -0.166 4.166 10 C -0.034 4.034 11 C -0.169 4.169 12 C 0.146 3.854 13 F -0.128 7.128 14 C -0.197 4.197 15 C 0.179 3.821 16 F -0.112 7.112 17 C 0.121 3.879 18 C -0.102 4.102 19 H 0.074 0.926 20 C 0.159 3.841 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.028 0.972 43 H 0.018 0.982 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 1.193 26.203 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.025 4.025 6 N -0.334 5.334 7 C 0.342 3.658 8 O -0.385 6.385 9 C -0.170 4.170 10 C -0.052 4.052 11 C -0.188 4.188 12 C 0.127 3.873 13 F -0.106 7.106 14 C -0.216 4.216 15 C 0.158 3.842 16 F -0.090 7.090 17 C -0.001 4.001 18 C -0.122 4.122 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.378 5.378 22 C -0.373 4.373 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.173 0.827 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.778 1.014 25.476 25.940 hybrid contribution -0.134 -0.288 -0.847 0.905 sum 4.644 0.726 24.628 25.073 Atomic orbital electron populations 1.21880 0.94888 1.02003 1.01736 1.21094 0.96061 0.99345 0.93834 0.90983 1.21915 0.94487 1.01750 0.98613 1.21902 0.95192 0.99239 0.86147 1.48085 1.42340 1.34798 1.08173 1.17928 0.79964 0.79977 0.87964 1.90918 1.54088 1.61413 1.32045 1.20157 1.07088 0.92702 0.97099 1.21050 0.93569 1.00395 0.90223 1.21120 1.04874 0.93037 0.99735 1.17454 0.96969 0.91197 0.81711 1.91553 1.88327 1.85613 1.45132 1.21004 1.05825 1.02307 0.92498 1.17218 0.94723 0.87055 0.85171 1.91641 1.84332 1.73808 1.59177 1.21805 0.93791 0.99269 0.85196 1.21732 0.94310 1.00880 0.95286 0.90728 1.20716 0.96851 0.94020 0.85289 1.42422 1.65288 1.29283 1.00806 1.19186 1.27953 1.06413 0.83760 0.91258 1.24762 1.00832 0.97514 0.97810 1.69675 1.42200 1.17302 1.28527 0.86211 0.77970 0.77447 0.84673 1.21754 1.21813 1.20839 0.92769 0.93208 0.91577 0.90700 0.91477 0.89700 0.90955 0.83172 0.83285 0.82700 0.91252 0.87658 0.95482 0.96374 0.78124 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.81 37.16 0.33 -1.35 16 2 C -0.08 -0.99 2.23 -90.58 -0.20 -1.19 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.23 5.34 -26.83 -0.14 -1.37 16 5 C 0.10 0.90 5.49 -3.93 -0.02 0.88 16 6 N -0.60 -8.22 2.98 -174.25 -0.52 -8.74 16 7 C 0.56 8.68 6.91 -12.45 -0.09 8.60 16 8 O -0.51 -10.59 16.29 5.29 0.09 -10.50 16 9 C -0.17 -1.95 4.89 -104.91 -0.51 -2.47 16 10 C -0.03 -0.26 7.42 -39.20 -0.29 -0.55 16 11 C -0.17 -1.10 10.01 -39.57 -0.40 -1.50 16 12 C 0.15 1.17 7.30 -39.29 -0.29 0.88 16 13 F -0.13 -1.05 17.26 2.25 0.04 -1.01 16 14 C -0.20 -1.78 9.99 -39.50 -0.39 -2.18 16 15 C 0.18 2.14 7.27 -38.98 -0.28 1.86 16 16 F -0.11 -1.67 16.65 2.25 0.04 -1.63 16 17 C 0.12 1.99 5.51 -3.71 -0.02 1.97 16 18 C -0.10 -1.64 1.92 -90.50 -0.17 -1.81 16 19 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 20 C 0.16 3.14 5.41 -4.04 -0.02 3.12 16 21 N -0.73 -18.88 5.38 -59.91 -0.32 -19.20 16 22 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 26 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.63 4.74 -51.93 -0.25 0.38 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.15 0.85 7.36 -52.49 -0.39 0.46 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.11 2.21 6.23 -51.93 -0.32 1.89 16 42 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.67 6.89 -40.82 -0.28 10.39 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -34.59 369.68 -8.24 -42.83 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.08 Total: 5.83 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.75 Total: -2.63 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.12 Total: -56.35 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.59 -8.24 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.655 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds