Wall clock time and date at job start Tue Mar 31 2020 22:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.44925 * 2 1 4 4 C 1.53039 * 109.45877 * 119.96182 * 2 1 3 5 5 C 1.52762 * 109.38462 * 181.26195 * 4 2 1 6 6 N 1.46921 * 109.00729 * 305.59038 * 5 4 2 7 7 C 1.34778 * 120.62953 * 233.58360 * 6 5 4 8 8 O 1.21586 * 120.00279 * 183.93376 * 7 6 5 9 9 C 1.47570 * 119.99833 * 3.93122 * 7 6 5 10 10 C 1.39734 * 120.14340 * 305.93717 * 9 7 6 11 11 C 1.37740 * 119.90636 * 179.97438 * 10 9 7 12 12 C 1.38760 * 120.19002 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.85587 * 180.02562 * 12 11 10 14 14 C 1.38497 * 120.28301 * 359.77083 * 12 11 10 15 15 C 1.38187 * 120.09510 * 0.50597 * 14 12 11 16 16 F 1.35104 * 120.09866 * 179.74823 * 15 14 12 17 17 C 1.46924 * 118.74345 * 53.30985 * 6 5 4 18 18 C 1.53037 * 109.46246 * 240.03025 * 2 1 3 19 19 H 1.08998 * 109.49696 * 298.56814 * 18 2 1 20 20 C 1.53001 * 109.52513 * 58.64905 * 18 2 1 21 21 N 1.46500 * 109.47176 * 184.85610 * 20 18 2 22 22 C 1.36934 * 119.99727 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00262 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00001 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99781 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00249 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46959 * 89.99825 * 26 24 22 28 28 H 1.48495 * 109.47093 * 210.00043 * 26 24 22 29 29 H 1.48499 * 109.47249 * 329.99982 * 26 24 22 30 30 H 1.08996 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47405 * 299.97046 * 1 2 3 32 32 H 1.09005 * 109.46824 * 59.97150 * 1 2 3 33 33 H 1.08998 * 109.50059 * 301.33892 * 4 2 1 34 34 H 1.08995 * 109.49861 * 61.40098 * 4 2 1 35 35 H 1.09000 * 109.50998 * 185.70364 * 5 4 2 36 36 H 1.08996 * 109.43202 * 65.42497 * 5 4 2 37 37 H 1.07997 * 120.04642 * 0.02562 * 10 9 7 38 38 H 1.07993 * 119.90216 * 180.02562 * 11 10 9 39 39 H 1.08009 * 119.95056 * 180.28025 * 14 12 11 40 40 H 1.08998 * 109.58638 * 66.42710 * 17 6 5 41 41 H 1.08997 * 109.59081 * 186.85762 * 17 6 5 42 42 H 1.09004 * 109.46886 * 304.85485 * 20 18 2 43 43 H 1.08999 * 109.46970 * 64.85079 * 20 18 2 44 44 H 0.97000 * 120.00114 * 359.97438 * 21 20 18 45 45 H 0.96993 * 119.99932 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5671 -0.6922 1.2644 6 7 4.0679 -1.2487 0.0002 7 6 4.9614 -2.2577 0.0003 8 8 5.4223 -2.6618 -1.0498 9 6 5.3805 -2.8721 1.2749 10 6 5.8836 -2.0747 2.3062 11 6 6.2727 -2.6532 3.4941 12 6 6.1662 -4.0255 3.6698 13 9 6.5494 -4.5857 4.8379 14 6 5.6637 -4.8226 2.6548 15 6 5.2751 -4.2553 1.4562 16 9 4.7897 -5.0335 0.4641 17 6 3.5715 -0.6886 -1.2641 18 6 2.0399 -0.7208 -1.2500 19 1 1.6979 -1.7557 -1.2382 20 6 1.5029 -0.0197 -2.4994 21 7 1.8952 -0.7766 -3.6908 22 6 1.5252 -0.3371 -4.9337 23 1 0.9439 0.5674 -5.0358 24 6 1.8973 -1.0540 -6.0627 25 7 2.6062 -2.1560 -5.9384 26 14 1.3920 -0.4548 -7.7583 27 1 2.4378 0.4531 -8.2943 28 1 1.2330 -1.6181 -8.6673 29 1 0.1036 0.2771 -7.6610 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 1.6572 -0.2206 2.1399 34 1 1.6973 -1.7553 1.2387 35 1 3.9346 -1.2906 2.0981 36 1 3.9097 0.3369 1.3716 37 1 5.9663 -1.0063 2.1724 38 1 6.6612 -2.0368 4.2913 39 1 5.5789 -5.8897 2.7990 40 1 3.9144 0.3409 -1.3672 41 1 3.9418 -1.2846 -2.0982 42 1 0.4156 0.0357 -2.4458 43 1 1.9157 0.9875 -2.5565 44 1 2.4176 -1.5888 -3.5992 45 1 2.8666 -2.6567 -6.7272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133278204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:54 Heat of formation + Delta-G solvation = -109.895916 kcal Electronic energy + Delta-G solvation = -29733.626477 eV Core-core repulsion = 25386.289642 eV Total energy + Delta-G solvation = -4347.336835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.22479 -50.11288 -41.70770 -39.78278 -38.90130 -36.65894 -35.15556 -33.56640 -32.52221 -31.81636 -31.28338 -29.24254 -27.37341 -25.48830 -24.99564 -24.17634 -23.77507 -22.60221 -21.45573 -20.49314 -19.28481 -19.17951 -18.60603 -18.30395 -17.49646 -17.03460 -16.84748 -16.75816 -16.44138 -16.15635 -15.95464 -15.62709 -15.55898 -15.50665 -15.24499 -15.02763 -14.52460 -14.37236 -14.27079 -14.11718 -13.85158 -13.53699 -13.30485 -13.06066 -12.94738 -12.76194 -12.67275 -12.61477 -12.55666 -12.17029 -12.01546 -11.91752 -11.80260 -11.39877 -11.21347 -11.04242 -10.91413 -10.20452 -9.95778 -9.70192 -9.00820 -7.95105 -5.25705 -0.50028 -0.14395 1.37555 1.44005 1.47342 1.55722 1.80279 2.23040 2.54684 2.66896 3.15004 3.25819 3.37787 3.46821 3.66590 3.77846 3.79196 3.84670 3.97565 4.04948 4.17284 4.26659 4.38634 4.53679 4.57481 4.58389 4.60415 4.72863 4.74686 4.78758 4.82994 4.85233 4.92706 4.94636 4.96506 5.07682 5.13044 5.23486 5.26911 5.41670 5.47702 5.49821 5.55934 5.58225 6.25095 6.26842 6.96300 7.30371 8.07466 8.29123 9.28482 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.002927 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.903485 B = 9564.093466 C =10731.141264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.091 0.909 4 C -0.124 4.124 5 C 0.090 3.910 6 N -0.595 5.595 7 C 0.548 3.452 8 O -0.582 6.582 9 C -0.182 4.182 10 C -0.021 4.021 11 C -0.142 4.142 12 C 0.151 3.849 13 F -0.125 7.125 14 C -0.192 4.192 15 C 0.145 3.855 16 F -0.143 7.143 17 C 0.127 3.873 18 C -0.089 4.089 19 H 0.044 0.956 20 C 0.157 3.843 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.264 1.264 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.369 0.631 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 4.041 30.281 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.030 4.030 6 N -0.326 5.326 7 C 0.337 3.663 8 O -0.462 6.462 9 C -0.186 4.186 10 C -0.039 4.039 11 C -0.160 4.160 12 C 0.131 3.869 13 F -0.103 7.103 14 C -0.211 4.211 15 C 0.125 3.875 16 F -0.121 7.121 17 C 0.004 3.996 18 C -0.109 4.109 19 H 0.062 0.938 20 C 0.031 3.969 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.189 1.189 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.198 0.802 38 H 0.208 0.792 39 H 0.184 0.816 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.472 3.927 29.637 30.229 hybrid contribution -0.056 -1.142 -1.967 2.275 sum 4.416 2.785 27.670 28.158 Atomic orbital electron populations 1.21861 0.94414 1.01492 1.02528 1.21101 0.96387 0.99876 0.92291 0.89044 1.21925 0.94520 1.00998 0.98769 1.22361 0.95107 1.01255 0.84286 1.48170 1.41411 1.34153 1.08854 1.18629 0.79438 0.79644 0.88631 1.90874 1.56843 1.63510 1.34938 1.19988 1.09358 0.92840 0.96407 1.21344 0.92030 1.01388 0.89141 1.21508 1.02253 0.92453 0.99785 1.17558 0.96249 0.91816 0.81233 1.91572 1.88166 1.85751 1.44823 1.21073 1.05220 1.03178 0.91665 1.17586 0.96904 0.87267 0.85758 1.91558 1.85199 1.74639 1.60724 1.21463 0.94079 0.98709 0.85307 1.21584 0.93793 0.99389 0.96152 0.93757 1.20928 0.97183 0.93971 0.84830 1.42709 1.65087 1.29285 1.02122 1.19676 1.26703 1.06214 0.84933 0.90130 1.25687 1.01657 0.97973 1.02058 1.69880 1.44359 1.19076 1.29128 0.85077 0.78230 0.76679 0.79404 1.21320 1.22448 1.18903 0.93978 0.89953 0.93187 0.86465 0.93092 0.87207 0.87575 0.80168 0.79153 0.81637 0.90063 0.93389 0.94861 0.95454 0.79999 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.81 71.98 0.63 -2.35 16 2 C -0.08 -1.64 2.23 -10.77 -0.02 -1.66 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -1.91 5.34 30.53 0.16 -1.75 16 5 C 0.09 1.34 5.49 86.22 0.47 1.81 16 6 N -0.59 -16.32 2.98 -823.46 -2.45 -18.78 16 7 C 0.55 18.05 6.91 86.71 0.60 18.65 16 8 O -0.58 -26.72 16.29 -3.99 -0.06 -26.79 16 9 C -0.18 -4.21 4.89 -20.05 -0.10 -4.31 16 10 C -0.02 -0.25 7.42 22.51 0.17 -0.08 16 11 C -0.14 -1.15 10.01 22.28 0.22 -0.93 16 12 C 0.15 1.91 7.30 22.46 0.16 2.08 16 13 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 14 C -0.19 -3.29 9.99 22.32 0.22 -3.07 16 15 C 0.15 3.60 7.27 22.66 0.16 3.76 16 16 F -0.14 -4.73 16.65 44.97 0.75 -3.98 16 17 C 0.13 4.41 5.51 86.37 0.48 4.89 16 18 C -0.09 -2.94 1.92 -10.71 -0.02 -2.96 16 19 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 20 C 0.16 6.35 5.41 86.38 0.47 6.82 16 21 N -0.75 -40.56 5.38 -343.44 -1.85 -42.40 16 22 C -0.24 -14.22 9.99 84.04 0.84 -13.38 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 24 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 25 N -0.97 -64.26 13.06 21.65 0.28 -63.98 16 26 Si 0.98 48.30 29.55 68.60 2.03 50.32 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 29 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.18 6.30 -2.38 -0.02 1.16 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.13 4.74 -2.39 -0.01 1.12 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.18 1.08 7.36 -2.91 -0.02 1.05 16 38 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 39 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 2.24 6.23 -2.39 -0.01 2.22 16 42 H 0.03 1.33 6.15 -2.39 -0.01 1.31 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.37 22.11 6.89 -92.71 -0.64 21.47 16 45 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -84.70 369.68 4.78 -79.92 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.39 Total: 23.51 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 4.92 Total: 3.00 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -4.02 Total: -125.16 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.06 Total: -26.79 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 1.53 Total: -4.80 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -84.70 4.78 -79.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.974 kcal (2) G-P(sol) polarization free energy of solvation -84.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds