Wall clock time and date at job start Tue Mar 31 2020 22:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.45226 * 2 1 4 4 C 1.53038 * 109.48541 * 240.04900 * 2 1 3 5 5 C 1.53191 * 109.34448 * 178.64853 * 4 2 1 6 6 N 1.46926 * 108.77102 * 54.61924 * 5 4 2 7 7 C 1.34779 * 120.63023 * 126.37526 * 6 5 4 8 8 O 1.21583 * 119.99794 * 175.86871 * 7 6 5 9 9 C 1.47573 * 119.99976 * 355.86897 * 7 6 5 10 10 C 1.39722 * 120.14047 * 54.26994 * 9 7 6 11 11 C 1.37742 * 119.90540 * 179.97438 * 10 9 7 12 12 C 1.38762 * 120.18823 * 0.02875 * 11 10 9 13 13 F 1.35102 * 119.85431 * 179.97438 * 12 11 10 14 14 C 1.38486 * 120.28720 * 359.97245 * 12 11 10 15 15 C 1.38200 * 120.09308 * 359.74706 * 14 12 11 16 16 F 1.35098 * 120.09665 * 180.27457 * 15 14 12 17 17 C 1.46931 * 118.74212 * 306.39352 * 6 5 4 18 18 C 1.53037 * 109.45772 * 119.97090 * 2 1 3 19 19 H 1.08993 * 109.50613 * 61.39508 * 18 2 1 20 20 C 1.53009 * 109.49472 * 301.32959 * 18 2 1 21 21 N 1.46498 * 109.46958 * 175.06655 * 20 18 2 22 22 C 1.36933 * 119.99918 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00261 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00412 * 180.02562 * 22 21 20 25 25 N 1.31631 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00424 * 179.72557 * 24 22 21 27 27 H 1.48502 * 109.47191 * 90.00008 * 26 24 22 28 28 H 1.48505 * 109.47529 * 209.99749 * 26 24 22 29 29 H 1.48501 * 109.47203 * 330.00012 * 26 24 22 30 30 H 1.09003 * 109.47137 * 300.03702 * 1 2 3 31 31 H 1.09002 * 109.46998 * 60.02855 * 1 2 3 32 32 H 1.08994 * 109.47454 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49562 * 58.67804 * 4 2 1 34 34 H 1.09005 * 109.50028 * 298.61844 * 4 2 1 35 35 H 1.08996 * 109.58516 * 294.83636 * 5 4 2 36 36 H 1.08997 * 109.70798 * 174.47599 * 5 4 2 37 37 H 1.08004 * 120.04890 * 359.95967 * 10 9 7 38 38 H 1.07999 * 119.90679 * 180.02562 * 11 10 9 39 39 H 1.08001 * 119.95527 * 180.02562 * 14 12 11 40 40 H 1.09000 * 109.58278 * 293.82438 * 17 6 5 41 41 H 1.09000 * 109.59090 * 173.40024 * 17 6 5 42 42 H 1.09000 * 109.46935 * 55.06835 * 20 18 2 43 43 H 1.09000 * 109.46854 * 295.06646 * 20 18 2 44 44 H 0.97002 * 120.00434 * 0.02562 * 21 20 18 45 45 H 0.96995 * 119.99876 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0405 -0.7203 -1.2501 5 6 3.5720 -0.6889 -1.2639 6 7 4.0678 -1.2497 0.0004 7 6 4.9609 -2.2591 0.0004 8 8 5.4204 -2.6642 1.0507 9 6 5.3811 -2.8727 -1.2743 10 6 5.8897 -2.0752 -2.3027 11 6 6.2809 -2.6530 -3.4903 12 6 6.1708 -4.0247 -3.6684 13 9 6.5560 -4.5843 -4.8362 14 6 5.6678 -4.8226 -2.6544 15 6 5.2772 -4.2559 -1.4560 16 9 4.7916 -5.0349 -0.4647 17 6 3.5713 -0.6894 1.2647 18 6 2.0398 -0.7208 1.2500 19 1 1.6972 -1.7555 1.2386 20 6 1.5027 -0.0189 2.4990 21 7 1.8929 -0.7763 3.6907 22 6 1.5217 -0.3368 4.9333 23 1 0.9409 0.5681 5.0348 24 6 1.8918 -1.0541 6.0626 25 7 2.5993 -2.1572 5.9389 26 14 1.3920 -0.4504 7.7581 27 1 0.0760 -1.0337 8.1232 28 1 2.4119 -0.8687 8.7532 29 1 1.2905 1.0311 7.7460 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6583 -0.2199 -2.1398 34 1 1.6979 -1.7550 -1.2392 35 1 3.9155 0.3404 -1.3667 36 1 3.9443 -1.2834 -2.0982 37 1 5.9757 -1.0072 -2.1668 38 1 6.6744 -2.0367 -4.2851 39 1 5.5848 -5.8897 -2.7987 40 1 3.9148 0.3399 1.3680 41 1 3.9411 -1.2857 2.0988 42 1 0.4156 0.0382 2.4446 43 1 1.9170 0.9877 2.5564 44 1 2.4143 -1.5892 3.5996 45 1 2.8582 -2.6583 6.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133278205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:57 Heat of formation + Delta-G solvation = -109.865444 kcal Electronic energy + Delta-G solvation = -29730.770082 eV Core-core repulsion = 25383.434569 eV Total energy + Delta-G solvation = -4347.335513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.22584 -50.11124 -41.70214 -39.77926 -38.89868 -36.65380 -35.15619 -33.55673 -32.52244 -31.81515 -31.27004 -29.23254 -27.37324 -25.48945 -24.99851 -24.17783 -23.77829 -22.59938 -21.45261 -20.49442 -19.28499 -19.17861 -18.60557 -18.30370 -17.49551 -17.03484 -16.84747 -16.75777 -16.44069 -16.15484 -15.95499 -15.62303 -15.55735 -15.50746 -15.24338 -15.02521 -14.52023 -14.37377 -14.26720 -14.11109 -13.85022 -13.53694 -13.30664 -13.05894 -12.94557 -12.75575 -12.68594 -12.60274 -12.55138 -12.19294 -12.00195 -11.91896 -11.80333 -11.39970 -11.21265 -11.04590 -10.91109 -10.20482 -9.95714 -9.70005 -9.00761 -7.95075 -5.25697 -0.49992 -0.14432 1.37663 1.44020 1.47295 1.55792 1.80315 2.22918 2.54700 2.66934 3.14978 3.25885 3.37814 3.46827 3.66725 3.77885 3.79349 3.84720 3.97515 4.04461 4.17351 4.26698 4.38645 4.53691 4.57322 4.58371 4.60410 4.72836 4.74697 4.78624 4.82964 4.85218 4.92660 4.94566 4.96474 5.07700 5.13096 5.23546 5.26995 5.41697 5.47726 5.49801 5.55914 5.58283 6.25137 6.26895 6.96344 7.30402 8.07501 8.29128 9.28500 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015717 B = 0.002926 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.055969 B = 9568.006508 C =10734.419264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.091 0.909 4 C -0.124 4.124 5 C 0.090 3.910 6 N -0.595 5.595 7 C 0.548 3.452 8 O -0.582 6.582 9 C -0.182 4.182 10 C -0.021 4.021 11 C -0.142 4.142 12 C 0.151 3.849 13 F -0.125 7.125 14 C -0.192 4.192 15 C 0.145 3.855 16 F -0.143 7.143 17 C 0.127 3.873 18 C -0.089 4.089 19 H 0.044 0.956 20 C 0.157 3.843 21 N -0.750 5.750 22 C -0.243 4.243 23 H 0.081 0.919 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.264 1.264 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.166 0.834 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.369 0.631 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 4.093 -30.265 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.030 4.030 6 N -0.326 5.326 7 C 0.337 3.663 8 O -0.462 6.462 9 C -0.186 4.186 10 C -0.039 4.039 11 C -0.160 4.160 12 C 0.131 3.869 13 F -0.103 7.103 14 C -0.211 4.211 15 C 0.125 3.875 16 F -0.121 7.121 17 C 0.005 3.995 18 C -0.109 4.109 19 H 0.062 0.938 20 C 0.031 3.969 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.189 1.189 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.198 0.802 38 H 0.208 0.792 39 H 0.184 0.816 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.200 0.800 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.599 3.989 -29.620 30.239 hybrid contribution -0.086 -1.160 1.963 2.282 sum 4.512 2.829 -27.657 28.165 Atomic orbital electron populations 1.21860 0.94416 1.01490 1.02531 1.21099 0.96377 0.99879 0.92297 0.89047 1.21993 0.94459 1.00981 0.98734 1.22451 0.95094 1.01190 0.84277 1.48175 1.41511 1.34051 1.08867 1.18630 0.79410 0.79678 0.88631 1.90873 1.56861 1.63514 1.34917 1.19985 1.09322 0.92844 0.96431 1.21340 0.92017 1.01380 0.89178 1.21510 1.02247 0.92472 0.99767 1.17557 0.96237 0.91823 0.81243 1.91575 1.88112 1.85777 1.44853 1.21073 1.05225 1.03171 0.91665 1.17588 0.96897 0.87254 0.85777 1.91556 1.85199 1.74589 1.60771 1.21463 0.94073 0.98706 0.85306 1.21583 0.93798 0.99381 0.96149 0.93762 1.20932 0.97195 0.93965 0.84826 1.42709 1.65143 1.29212 1.02139 1.19674 1.26678 1.06212 0.84947 0.90129 1.25687 1.01642 0.97996 1.02057 1.69884 1.44382 1.19061 1.29125 0.85079 0.76823 0.78199 0.79291 1.21286 1.22494 1.18887 0.93176 0.89958 0.93982 0.86519 0.93077 0.87578 0.87193 0.80170 0.79153 0.81641 0.90061 0.93383 0.94853 0.95457 0.79999 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.82 71.98 0.63 -2.35 16 2 C -0.08 -1.64 2.23 -10.77 -0.02 -1.66 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 4 C -0.12 -1.91 5.36 30.67 0.16 -1.74 16 5 C 0.09 1.34 5.53 86.36 0.48 1.82 16 6 N -0.59 -16.32 2.97 -822.61 -2.44 -18.76 16 7 C 0.55 18.04 6.91 86.71 0.60 18.64 16 8 O -0.58 -26.71 16.28 -3.98 -0.06 -26.77 16 9 C -0.18 -4.21 4.89 -20.05 -0.10 -4.31 16 10 C -0.02 -0.25 7.42 22.51 0.17 -0.08 16 11 C -0.14 -1.15 10.01 22.28 0.22 -0.93 16 12 C 0.15 1.91 7.30 22.45 0.16 2.08 16 13 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 14 C -0.19 -3.29 9.99 22.32 0.22 -3.07 16 15 C 0.15 3.60 7.27 22.66 0.16 3.76 16 16 F -0.14 -4.73 16.65 44.97 0.75 -3.98 16 17 C 0.13 4.41 5.51 86.36 0.48 4.89 16 18 C -0.09 -2.94 1.92 -10.71 -0.02 -2.96 16 19 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 20 C 0.16 6.35 5.41 86.38 0.47 6.81 16 21 N -0.75 -40.55 5.38 -343.45 -1.85 -42.40 16 22 C -0.24 -14.21 9.99 84.03 0.84 -13.37 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 24 C -0.08 -4.98 5.50 84.86 0.47 -4.52 16 25 N -0.97 -64.27 13.06 21.65 0.28 -63.99 16 26 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 28 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 29 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.05 1.18 6.30 -2.39 -0.02 1.17 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 1.13 4.73 -2.39 -0.01 1.12 16 37 H 0.18 1.07 7.37 -2.91 -0.02 1.05 16 38 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 39 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 2.24 6.23 -2.39 -0.01 2.23 16 42 H 0.03 1.33 6.14 -2.39 -0.01 1.31 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.37 22.11 6.90 -92.71 -0.64 21.47 16 45 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -84.69 369.72 4.79 -79.89 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.39 Total: 23.52 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.92 Total: 3.00 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -4.01 Total: -125.15 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.06 Total: -26.77 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 1.53 Total: -4.80 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -84.69 4.79 -79.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133278205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.972 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds