Wall clock time and date at job start Tue Mar 31 2020 22:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08994 * 109.45663 * 2 1 4 4 C 1.53039 * 109.46112 * 119.97865 * 2 1 3 5 5 C 1.53185 * 109.31144 * 181.37174 * 4 2 1 6 6 N 1.46929 * 108.77846 * 305.36635 * 5 4 2 7 7 C 1.34778 * 120.62989 * 233.58891 * 6 5 4 8 8 O 1.21553 * 120.00112 * 183.80870 * 7 6 5 9 9 C 1.47858 * 119.99907 * 3.81098 * 7 6 5 10 10 C 1.39549 * 120.12065 * 309.19613 * 9 7 6 11 11 C 1.38208 * 119.87900 * 179.79182 * 10 9 7 12 12 F 1.35098 * 119.93774 * 180.23265 * 11 10 9 13 13 C 1.38529 * 120.11815 * 0.47279 * 11 10 9 14 14 C 1.38529 * 120.24465 * 359.78280 * 13 11 10 15 15 F 1.35101 * 119.93992 * 179.97438 * 14 13 11 16 16 C 1.38199 * 120.12012 * 359.97438 * 14 13 11 17 17 C 1.46917 * 118.73858 * 53.85569 * 6 5 4 18 18 C 1.53036 * 109.44751 * 240.03990 * 2 1 3 19 19 H 1.09007 * 109.49854 * 298.60362 * 18 2 1 20 20 C 1.52998 * 109.50099 * 58.66771 * 18 2 1 21 21 N 1.46503 * 109.47565 * 185.00157 * 20 18 2 22 22 C 1.36940 * 120.00076 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99929 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99625 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00289 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 119.99806 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46844 * 90.00322 * 26 24 22 28 28 H 1.48503 * 109.47011 * 210.00429 * 26 24 22 29 29 H 1.48498 * 109.47052 * 330.00141 * 26 24 22 30 30 H 1.08996 * 109.46708 * 300.02063 * 1 2 3 31 31 H 1.08992 * 109.47121 * 60.02599 * 1 2 3 32 32 H 1.08997 * 109.46441 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49994 * 61.42054 * 4 2 1 34 34 H 1.09004 * 109.49339 * 301.32145 * 4 2 1 35 35 H 1.09003 * 109.58719 * 185.57386 * 5 4 2 36 36 H 1.09008 * 109.70575 * 65.22041 * 5 4 2 37 37 H 1.08005 * 120.05879 * 0.02877 * 10 9 7 38 38 H 1.08001 * 119.87477 * 179.76667 * 13 11 10 39 39 H 1.08005 * 120.05849 * 179.97438 * 16 14 13 40 40 H 1.08999 * 109.58534 * 65.93042 * 17 6 5 41 41 H 1.09002 * 109.58706 * 186.35438 * 17 6 5 42 42 H 1.09002 * 109.47241 * 304.99892 * 20 18 2 43 43 H 1.09004 * 109.47240 * 64.99731 * 20 18 2 44 44 H 0.96995 * 119.99584 * 0.02562 * 21 20 18 45 45 H 0.97002 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2499 5 6 3.5714 -0.6891 1.2639 6 7 4.0677 -1.2492 -0.0006 7 6 4.9618 -2.2578 -0.0008 8 8 5.4170 -2.6662 -1.0513 9 6 5.3888 -2.8675 1.2767 10 6 5.8324 -2.0596 2.3245 11 6 6.2262 -2.6345 3.5181 12 9 6.6514 -1.8532 4.5348 13 6 6.1905 -4.0108 3.6718 14 6 5.7561 -4.8179 2.6332 15 9 5.7242 -6.1594 2.7897 16 6 5.3552 -4.2533 1.4372 17 6 3.5754 -0.6851 -1.2646 18 6 2.0396 -0.7207 -1.2502 19 1 1.6969 -1.7554 -1.2388 20 6 1.5025 -0.0186 -2.4990 21 7 1.8911 -0.7768 -3.6908 22 6 1.5194 -0.3371 -4.9333 23 1 0.9402 0.5687 -5.0347 24 6 1.8881 -1.0553 -6.0625 25 7 2.5945 -2.1590 -5.9390 26 14 1.3817 -0.4552 -7.7576 27 1 2.4289 0.4498 -8.2955 28 1 1.2184 -1.6185 -8.6661 29 1 0.0953 0.2799 -7.6585 30 1 -0.3632 0.5141 0.8898 31 1 -0.3633 0.5134 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.6978 -1.7558 1.2381 34 1 1.6575 -0.2209 2.1398 35 1 3.9418 -1.2852 2.0979 36 1 3.9167 0.3396 1.3682 37 1 5.8642 -0.9867 2.2043 38 1 6.5027 -4.4561 4.6049 39 1 5.0170 -4.8835 0.6279 40 1 3.9188 0.3447 -1.3634 41 1 3.9483 -1.2785 -2.0994 42 1 0.4154 0.0396 -2.4439 43 1 1.9177 0.9876 -2.5571 44 1 2.4110 -1.5905 -3.5997 45 1 2.8517 -2.6610 -6.7282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133298477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:00 Heat of formation + Delta-G solvation = -107.390653 kcal Electronic energy + Delta-G solvation = -29476.132811 eV Core-core repulsion = 25128.904612 eV Total energy + Delta-G solvation = -4347.228198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.14202 -50.09263 -41.81573 -39.82186 -38.84545 -36.66276 -35.17492 -33.54923 -32.61727 -31.67806 -31.24480 -29.30774 -27.44911 -25.75642 -24.96657 -24.01455 -23.83654 -22.59585 -21.48701 -20.59190 -19.26604 -18.99035 -18.43119 -17.77161 -17.53489 -17.12463 -17.04394 -16.81069 -16.74154 -16.41083 -16.09198 -15.60436 -15.54032 -15.45536 -15.29187 -15.09243 -14.51137 -14.30137 -14.16721 -14.06715 -13.81318 -13.31892 -13.16979 -13.06250 -13.04086 -12.94403 -12.74971 -12.63221 -12.59242 -12.16562 -12.01752 -11.90865 -11.79907 -11.41115 -11.21099 -11.04604 -10.90813 -10.25762 -9.93004 -9.74445 -8.99072 -7.94269 -5.24242 -0.51191 -0.24921 1.35765 1.45294 1.48037 1.56363 1.72973 2.17014 2.55542 2.65746 3.13272 3.21800 3.38908 3.58491 3.65420 3.75426 3.76833 3.81547 3.84279 4.02866 4.14048 4.24330 4.31014 4.40864 4.53769 4.56688 4.59614 4.71643 4.74837 4.78444 4.79322 4.83207 4.86900 4.93909 4.97279 5.08020 5.13875 5.24688 5.27062 5.40406 5.49042 5.49318 5.51858 5.58981 6.24095 6.26655 6.92333 7.32153 8.09299 8.30715 9.29186 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.002823 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.409792 B = 9916.602471 C =11023.550377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.123 4.123 5 C 0.088 3.912 6 N -0.594 5.594 7 C 0.550 3.450 8 O -0.576 6.576 9 C -0.068 4.068 10 C -0.125 4.125 11 C 0.136 3.864 12 F -0.122 7.122 13 C -0.158 4.158 14 C 0.129 3.871 15 F -0.130 7.130 16 C -0.126 4.126 17 C 0.126 3.874 18 C -0.088 4.088 19 H 0.050 0.950 20 C 0.157 3.843 21 N -0.748 5.748 22 C -0.244 4.244 23 H 0.079 0.921 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.266 1.266 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.370 0.630 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 2.474 28.597 28.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.033 4.033 6 N -0.325 5.325 7 C 0.338 3.662 8 O -0.456 6.456 9 C -0.072 4.072 10 C -0.144 4.144 11 C 0.116 3.884 12 F -0.100 7.100 13 C -0.177 4.177 14 C 0.109 3.891 15 F -0.108 7.108 16 C -0.146 4.146 17 C 0.004 3.996 18 C -0.108 4.108 19 H 0.069 0.931 20 C 0.030 3.970 21 N -0.391 5.391 22 C -0.375 4.375 23 H 0.097 0.903 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.214 1.214 28 H -0.224 1.224 29 H -0.190 1.190 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.188 0.812 38 H 0.197 0.803 39 H 0.155 0.845 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.766 2.393 27.991 28.344 hybrid contribution 0.128 -0.681 -1.611 1.754 sum 3.894 1.712 26.380 26.720 Atomic orbital electron populations 1.21858 0.94372 1.01635 1.02430 1.21101 0.96410 0.99795 0.92441 0.89396 1.21984 0.94101 1.01319 0.98653 1.22491 0.95385 1.01014 0.84405 1.48171 1.41559 1.33895 1.08852 1.18647 0.79370 0.79647 0.88564 1.90879 1.56834 1.63411 1.34438 1.19196 1.01561 0.93251 0.93171 1.21444 1.00031 1.02340 0.90588 1.16916 0.98561 0.87775 0.85102 1.91587 1.87126 1.73882 1.57406 1.21395 1.02940 0.92108 1.01252 1.17011 1.00664 0.77554 0.93838 1.91562 1.94080 1.29299 1.95895 1.21189 1.01332 0.94415 0.97692 1.21586 0.94129 0.98694 0.85218 1.21650 0.93650 0.99634 0.95857 0.93114 1.20930 0.97212 0.93933 0.84914 1.42683 1.65281 1.29096 1.02036 1.19658 1.26776 1.06093 0.85005 0.90277 1.25636 1.01673 0.97975 1.01871 1.69864 1.44469 1.18857 1.29082 0.85115 0.78186 0.76696 0.79617 1.21416 1.22414 1.19027 0.90182 0.93201 0.93687 0.92414 0.86873 0.87351 0.88126 0.81170 0.80296 0.84503 0.90262 0.92819 0.94869 0.95672 0.79852 0.94177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.82 71.99 0.63 -2.26 16 2 C -0.08 -1.61 2.23 -10.76 -0.02 -1.64 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -1.84 5.36 30.67 0.16 -1.67 16 5 C 0.09 1.32 5.37 86.36 0.46 1.79 16 6 N -0.59 -15.49 2.97 -821.46 -2.44 -17.93 16 7 C 0.55 16.73 7.24 86.79 0.63 17.36 16 8 O -0.58 -24.35 16.47 -3.88 -0.06 -24.42 16 9 C -0.07 -1.48 5.00 -20.10 -0.10 -1.59 16 10 C -0.12 -1.83 7.34 22.58 0.17 -1.66 16 11 C 0.14 1.73 7.29 22.33 0.16 1.90 16 12 F -0.12 -1.51 17.26 44.97 0.78 -0.74 16 13 C -0.16 -1.95 10.00 22.41 0.22 -1.73 16 14 C 0.13 2.21 7.29 22.33 0.16 2.38 16 15 F -0.13 -2.43 17.26 44.97 0.78 -1.66 16 16 C -0.13 -2.72 9.71 22.58 0.22 -2.50 16 17 C 0.13 4.19 5.54 86.51 0.48 4.67 16 18 C -0.09 -2.77 1.93 -10.57 -0.02 -2.79 16 19 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 20 C 0.16 6.15 5.41 86.38 0.47 6.62 16 21 N -0.75 -39.41 5.38 -343.45 -1.85 -41.26 16 22 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 23 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 25 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 26 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.15 6.29 -2.39 -0.02 1.13 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.11 1.24 4.56 -2.39 -0.01 1.22 16 36 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.17 1.81 7.08 -2.91 -0.02 1.79 16 38 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 41 H 0.05 2.37 6.25 -2.39 -0.01 2.36 16 42 H 0.03 1.29 6.14 -2.39 -0.01 1.28 16 43 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.37 21.43 6.92 -92.71 -0.64 20.79 16 45 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -76.55 370.04 4.84 -71.71 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.39 Total: 25.72 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.93 Total: 1.44 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -4.00 Total: -121.67 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.55 Total: -2.40 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -76.55 4.84 -71.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133298477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.680 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds