Wall clock time and date at job start Tue Mar 31 2020 22:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.45904 * 2 1 4 4 C 1.53036 * 109.45990 * 240.02737 * 2 1 3 5 5 C 1.53192 * 109.33970 * 178.61208 * 4 2 1 6 6 N 1.46994 * 108.74137 * 54.62026 * 5 4 2 7 7 C 1.34777 * 120.61442 * 126.38556 * 6 5 4 8 8 O 1.21555 * 119.99501 * 176.20577 * 7 6 5 9 9 C 1.47848 * 120.00038 * 356.21109 * 7 6 5 10 10 C 1.39544 * 120.12515 * 50.69270 * 9 7 6 11 11 C 1.38201 * 119.87857 * 179.79171 * 10 9 7 12 12 F 1.35106 * 119.93954 * 180.23241 * 11 10 9 13 13 C 1.38526 * 120.12307 * 0.46410 * 11 10 9 14 14 C 1.38526 * 120.24268 * 359.78675 * 13 11 10 15 15 F 1.35105 * 119.94130 * 179.97438 * 14 13 11 16 16 C 1.38205 * 120.12402 * 359.97438 * 14 13 11 17 17 C 1.46931 * 118.75361 * 306.41194 * 6 5 4 18 18 C 1.53041 * 109.45067 * 119.96283 * 2 1 3 19 19 H 1.09006 * 109.49660 * 61.42694 * 18 2 1 20 20 C 1.53005 * 109.49820 * 301.33038 * 18 2 1 21 21 N 1.46500 * 109.46904 * 174.99738 * 20 18 2 22 22 C 1.36936 * 119.99595 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00586 * 359.97438 * 22 21 20 24 24 C 1.38819 * 119.99483 * 180.02562 * 22 21 20 25 25 N 1.31617 * 120.00349 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99590 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47231 * 59.99873 * 26 24 22 28 28 H 1.48498 * 109.46720 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.46857 * 299.99603 * 26 24 22 30 30 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47170 * 299.97261 * 1 2 3 32 32 H 1.08995 * 109.47198 * 59.96936 * 1 2 3 33 33 H 1.08996 * 109.49782 * 298.57736 * 4 2 1 34 34 H 1.08993 * 109.50056 * 58.64450 * 4 2 1 35 35 H 1.08999 * 109.58727 * 174.43678 * 5 4 2 36 36 H 1.09003 * 109.58548 * 294.86109 * 5 4 2 37 37 H 1.07999 * 120.05861 * 0.02562 * 10 9 7 38 38 H 1.08004 * 119.88294 * 179.76694 * 13 11 10 39 39 H 1.07996 * 120.06718 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.58945 * 293.81832 * 17 6 5 41 41 H 1.08999 * 109.58742 * 173.39282 * 17 6 5 42 42 H 1.08993 * 109.47091 * 294.99508 * 20 18 2 43 43 H 1.09001 * 109.46755 * 54.99862 * 20 18 2 44 44 H 0.97003 * 120.00088 * 0.02562 * 21 20 18 45 45 H 0.97000 * 120.00048 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2648 6 7 4.0676 -1.2492 0.0003 7 6 4.9610 -2.2584 0.0004 8 8 5.4161 -2.6670 1.0509 9 6 5.3875 -2.8683 -1.2771 10 6 5.8294 -2.0606 -2.3257 11 6 6.2310 -2.6363 -3.5161 12 9 6.6635 -1.8558 -4.5305 13 6 6.1863 -4.0120 -3.6729 14 6 5.7436 -4.8183 -2.6372 15 9 5.7020 -6.1592 -2.7969 16 6 5.3443 -4.2536 -1.4406 17 6 3.5711 -0.6888 1.2645 18 6 2.0396 -0.7207 1.2502 19 1 1.6973 -1.7556 1.2385 20 6 1.5025 -0.0186 2.4990 21 7 1.8912 -0.7769 3.6908 22 6 1.5196 -0.3373 4.9333 23 1 0.9404 0.5685 5.0348 24 6 1.8883 -1.0556 6.0625 25 7 2.5947 -2.1593 5.9389 26 14 1.3808 -0.4563 7.7575 27 1 -0.1007 -0.3965 7.8383 28 1 1.8959 -1.3930 8.7883 29 1 1.9445 0.8971 7.9932 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6976 -1.7556 -1.2382 34 1 1.6570 -0.2212 -2.1397 35 1 3.9412 -1.2849 -2.0992 36 1 3.9144 0.3405 -1.3679 37 1 5.8611 -0.9877 -2.2058 38 1 6.4975 -4.4576 -4.6063 39 1 4.9989 -4.8830 -0.6339 40 1 3.9142 0.3406 1.3677 41 1 3.9412 -1.2848 2.0988 42 1 1.9178 0.9874 2.5571 43 1 0.4154 0.0395 2.4439 44 1 2.4117 -1.5903 3.5996 45 1 2.8520 -2.6613 6.7280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133298478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:02 Heat of formation + Delta-G solvation = -107.217072 kcal Electronic energy + Delta-G solvation = -29478.016603 eV Core-core repulsion = 25130.795932 eV Total energy + Delta-G solvation = -4347.220671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.14108 -50.09093 -41.81905 -39.83062 -38.84848 -36.66127 -35.17252 -33.55691 -32.61880 -31.68002 -31.25156 -29.31550 -27.44775 -25.75622 -24.96420 -24.01619 -23.83508 -22.59374 -21.49388 -20.58961 -19.26700 -18.98966 -18.43130 -17.77679 -17.53068 -17.12664 -17.04612 -16.80870 -16.74180 -16.41017 -16.09113 -15.60888 -15.54019 -15.45623 -15.29234 -15.09105 -14.51154 -14.30316 -14.17032 -14.06716 -13.81222 -13.32267 -13.16936 -13.06140 -13.04039 -12.93058 -12.72803 -12.63836 -12.58799 -12.21183 -12.01676 -11.91122 -11.79991 -11.41175 -11.20935 -11.04299 -10.89754 -10.25912 -9.93095 -9.74697 -8.99102 -7.94029 -5.24059 -0.51107 -0.24958 1.35619 1.45250 1.49256 1.55486 1.72786 2.16931 2.55752 2.65660 3.13293 3.21755 3.38900 3.58485 3.65375 3.75381 3.76780 3.81613 3.84481 4.02732 4.13970 4.24487 4.30958 4.40934 4.53731 4.56696 4.59379 4.71747 4.74876 4.78425 4.79209 4.83137 4.86894 4.93779 4.97244 5.07964 5.13914 5.24586 5.27198 5.40318 5.48827 5.49225 5.51815 5.58832 6.23958 6.26639 6.92262 7.32197 8.09391 8.30866 9.29204 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.002822 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.398953 B = 9918.730842 C =11018.743593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.088 0.912 4 C -0.123 4.123 5 C 0.088 3.912 6 N -0.594 5.594 7 C 0.550 3.450 8 O -0.576 6.576 9 C -0.068 4.068 10 C -0.125 4.125 11 C 0.136 3.864 12 F -0.122 7.122 13 C -0.158 4.158 14 C 0.129 3.871 15 F -0.130 7.130 16 C -0.126 4.126 17 C 0.127 3.873 18 C -0.089 4.089 19 H 0.050 0.950 20 C 0.157 3.843 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.276 1.276 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.137 0.863 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.025 0.975 43 H 0.034 0.966 44 H 0.370 0.630 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 2.450 -28.561 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.033 4.033 6 N -0.325 5.325 7 C 0.338 3.662 8 O -0.456 6.456 9 C -0.072 4.072 10 C -0.144 4.144 11 C 0.116 3.884 12 F -0.100 7.100 13 C -0.177 4.177 14 C 0.109 3.891 15 F -0.108 7.108 16 C -0.146 4.146 17 C 0.004 3.996 18 C -0.108 4.108 19 H 0.069 0.931 20 C 0.030 3.970 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.188 0.812 38 H 0.197 0.803 39 H 0.155 0.845 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.202 0.798 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.804 2.367 -27.950 28.307 hybrid contribution 0.102 -0.676 1.604 1.743 sum 3.906 1.692 -26.346 26.688 Atomic orbital electron populations 1.21856 0.94365 1.01635 1.02433 1.21099 0.96419 0.99792 0.92431 0.89397 1.21986 0.94125 1.01322 0.98656 1.22509 0.95376 1.01011 0.84400 1.48189 1.41525 1.33937 1.08834 1.18646 0.79389 0.79619 0.88569 1.90880 1.56831 1.63411 1.34438 1.19197 1.01588 0.93257 0.93129 1.21443 1.00025 1.02331 0.90612 1.16918 0.98440 0.87790 0.85202 1.91590 1.86896 1.73932 1.57590 1.21394 1.02905 0.92129 1.01270 1.17013 1.00629 0.77576 0.93837 1.91563 1.94062 1.29358 1.95852 1.21191 1.01352 0.94411 0.97679 1.21493 0.94142 0.98748 0.85220 1.21575 0.93705 0.99647 0.95892 0.93137 1.20925 0.97217 0.93920 0.84898 1.42675 1.65254 1.29137 1.02026 1.19628 1.26895 1.06172 0.85026 0.90291 1.25641 1.01611 0.97971 1.01881 1.69855 1.44372 1.18838 1.29185 0.85183 0.77979 0.77151 0.79278 1.20124 1.22439 1.20190 0.93688 0.93199 0.90180 0.92423 0.86872 0.87306 0.88114 0.81167 0.80294 0.84500 0.90318 0.92825 0.95686 0.94857 0.79849 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.82 71.98 0.63 -2.27 16 2 C -0.08 -1.61 2.23 -10.77 -0.02 -1.64 16 3 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 4 C -0.12 -1.85 5.36 30.67 0.16 -1.68 16 5 C 0.09 1.32 5.38 86.35 0.46 1.79 16 6 N -0.59 -15.51 2.97 -822.12 -2.44 -17.95 16 7 C 0.55 16.75 7.23 86.79 0.63 17.37 16 8 O -0.58 -24.37 16.47 -3.89 -0.06 -24.43 16 9 C -0.07 -1.48 5.00 -20.10 -0.10 -1.58 16 10 C -0.12 -1.83 7.34 22.58 0.17 -1.67 16 11 C 0.14 1.74 7.29 22.33 0.16 1.90 16 12 F -0.12 -1.52 17.26 44.97 0.78 -0.74 16 13 C -0.16 -1.95 10.00 22.41 0.22 -1.73 16 14 C 0.13 2.21 7.29 22.33 0.16 2.38 16 15 F -0.13 -2.43 17.26 44.97 0.78 -1.66 16 16 C -0.13 -2.72 9.72 22.58 0.22 -2.50 16 17 C 0.13 4.20 5.51 86.36 0.48 4.68 16 18 C -0.09 -2.78 1.92 -10.71 -0.02 -2.80 16 19 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 20 C 0.16 6.17 5.41 86.38 0.47 6.64 16 21 N -0.75 -39.44 5.38 -343.45 -1.85 -41.29 16 22 C -0.25 -14.10 9.99 84.04 0.84 -13.26 16 23 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 25 N -0.97 -62.76 13.06 21.65 0.28 -62.47 16 26 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 29 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.15 6.29 -2.38 -0.02 1.14 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.24 4.55 -2.39 -0.01 1.23 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.17 1.81 7.07 -2.91 -0.02 1.79 16 38 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 2.37 6.24 -2.39 -0.01 2.36 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.03 1.30 6.14 -2.39 -0.01 1.28 16 44 H 0.37 21.45 6.90 -92.71 -0.64 20.81 16 45 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -76.52 369.98 4.83 -71.69 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.39 Total: 25.89 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.93 Total: 1.37 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -4.01 Total: -121.72 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.06 Total: -24.43 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.55 Total: -2.40 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -76.52 4.83 -71.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133298478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.524 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds