Wall clock time and date at job start Tue Mar 31 2020 22:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.45877 * 2 1 4 4 C 1.53051 * 109.44601 * 119.95993 * 2 1 3 5 5 C 1.53190 * 109.31097 * 58.64792 * 4 2 1 6 6 N 1.46931 * 108.77411 * 54.64009 * 5 4 2 7 7 C 1.34772 * 120.63348 * 126.36450 * 6 5 4 8 8 O 1.21551 * 119.99771 * 176.22431 * 7 6 5 9 9 C 1.47853 * 119.99875 * 356.23372 * 7 6 5 10 10 C 1.39552 * 120.12166 * 230.53528 * 9 7 6 11 11 C 1.38203 * 119.88123 * 179.72427 * 10 9 7 12 12 F 1.35096 * 119.93826 * 180.31969 * 11 10 9 13 13 C 1.38529 * 120.11880 * 0.57248 * 11 10 9 14 14 C 1.38535 * 120.24481 * 359.70481 * 13 11 10 15 15 F 1.35098 * 119.94182 * 180.02562 * 14 13 11 16 16 C 1.38207 * 120.11910 * 359.97438 * 14 13 11 17 17 C 1.46929 * 118.73596 * 306.38682 * 6 5 4 18 18 C 1.53038 * 109.46452 * 240.01926 * 2 1 3 19 19 H 1.08996 * 109.49806 * 181.40872 * 18 2 1 20 20 C 1.53005 * 109.49478 * 61.31173 * 18 2 1 21 21 N 1.46498 * 109.46895 * 174.99945 * 20 18 2 22 22 C 1.36937 * 120.00012 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99677 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00431 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99760 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00334 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46923 * 59.99692 * 26 24 22 28 28 H 1.48494 * 109.47110 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47039 * 299.99903 * 26 24 22 30 30 H 1.09001 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47799 * 300.00714 * 1 2 3 32 32 H 1.08999 * 109.46993 * 60.00411 * 1 2 3 33 33 H 1.08998 * 109.49628 * 178.60620 * 4 2 1 34 34 H 1.09005 * 109.49324 * 298.70034 * 4 2 1 35 35 H 1.08993 * 109.59081 * 294.85064 * 5 4 2 36 36 H 1.08999 * 109.69865 * 174.49052 * 5 4 2 37 37 H 1.08008 * 120.05521 * 359.97438 * 10 9 7 38 38 H 1.07994 * 119.87806 * 179.71886 * 13 11 10 39 39 H 1.07994 * 120.05995 * 180.02562 * 16 14 13 40 40 H 1.09003 * 109.58392 * 293.82513 * 17 6 5 41 41 H 1.08994 * 109.70692 * 173.47002 * 17 6 5 42 42 H 1.08996 * 109.46845 * 295.00251 * 20 18 2 43 43 H 1.09004 * 109.46952 * 54.99713 * 20 18 2 44 44 H 0.97001 * 119.99896 * 0.02562 * 21 20 18 45 45 H 0.96997 * 120.00007 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0395 -0.7207 1.2504 5 6 1.4989 -2.1540 1.2646 6 7 1.8620 -2.8090 0.0005 7 6 2.5157 -3.9876 0.0008 8 8 2.7498 -4.5528 -1.0495 9 6 2.9477 -4.5930 1.2786 10 6 4.2658 -5.0221 1.4399 11 6 4.6658 -5.5821 2.6384 12 9 5.9431 -5.9920 2.7981 13 6 3.7580 -5.7286 3.6745 14 6 2.4468 -5.3097 3.5179 15 9 1.5667 -5.4550 4.5325 16 6 2.0377 -4.7423 2.3259 17 6 1.4994 -2.1543 -1.2639 18 6 2.0399 -0.7210 -1.2498 19 1 3.1296 -0.7433 -1.2379 20 6 1.5572 0.0191 -2.4990 21 7 2.1428 -0.6004 -3.6904 22 6 1.8526 -0.1039 -4.9331 23 1 1.1916 0.7441 -5.0349 24 6 2.4069 -0.6911 -6.0620 25 7 3.2121 -1.7250 -5.9380 26 14 2.0115 -0.0134 -7.7573 27 1 2.4490 1.4034 -7.8383 28 1 2.7240 -0.8106 -8.7877 29 1 0.5476 -0.0936 -7.9934 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1292 -0.7429 1.2388 34 1 1.6953 -0.1932 2.1400 35 1 0.4140 -2.1343 1.3675 36 1 1.9352 -2.7030 2.0991 37 1 4.9731 -4.9130 0.6309 38 1 4.0736 -6.1709 4.6078 39 1 1.0155 -4.4156 2.2050 40 1 0.4144 -2.1347 -1.3672 41 1 1.9360 -2.7013 -2.0994 42 1 0.4703 -0.0370 -2.5572 43 1 1.8647 1.0634 -2.4440 44 1 2.7362 -1.3623 -3.5989 45 1 3.5998 -2.1351 -6.7269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133298479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:05 Heat of formation + Delta-G solvation = -104.390626 kcal Electronic energy + Delta-G solvation = -29626.301485 eV Core-core repulsion = 25279.203378 eV Total energy + Delta-G solvation = -4347.098107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.14220 -50.09234 -41.90166 -39.95974 -38.87742 -36.67230 -35.01424 -33.51609 -32.58293 -31.68190 -31.25538 -28.75305 -27.49359 -26.26659 -24.96690 -24.60352 -23.96093 -22.58654 -21.47469 -19.89618 -18.99734 -18.91124 -18.41632 -17.84253 -17.50416 -17.12617 -17.03948 -16.79132 -16.74961 -16.41078 -16.13263 -16.06661 -15.71469 -15.41083 -15.30812 -15.03777 -14.56812 -14.44744 -14.24841 -13.82811 -13.79454 -13.34488 -13.16512 -13.07380 -13.01807 -12.83122 -12.75703 -12.61930 -12.46587 -12.17577 -12.03221 -11.90367 -11.74592 -11.43657 -11.24076 -11.05682 -10.91807 -10.25478 -9.93149 -9.68129 -9.00156 -7.94313 -5.24585 -0.51099 -0.24871 1.35843 1.45177 1.49197 1.55464 1.72958 2.17092 2.55554 2.65774 3.13382 3.21824 3.38610 3.58512 3.65924 3.75140 3.78160 3.81684 3.85452 4.05825 4.12983 4.24923 4.30989 4.39604 4.50394 4.56735 4.57441 4.68030 4.73374 4.77308 4.78139 4.83092 4.86568 4.91946 4.99980 5.10894 5.18105 5.26273 5.31155 5.39229 5.44602 5.48980 5.51415 5.61937 6.24530 6.26395 6.92554 7.31878 8.08801 8.30395 9.28915 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.002856 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.815377 B = 9802.824588 C =11021.528536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.123 4.123 5 C 0.086 3.914 6 N -0.592 5.592 7 C 0.549 3.451 8 O -0.576 6.576 9 C -0.068 4.068 10 C -0.126 4.126 11 C 0.129 3.871 12 F -0.130 7.130 13 C -0.158 4.158 14 C 0.136 3.864 15 F -0.122 7.122 16 C -0.125 4.125 17 C 0.128 3.872 18 C -0.090 4.090 19 H 0.050 0.950 20 C 0.160 3.840 21 N -0.749 5.749 22 C -0.246 4.246 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.180 0.820 39 H 0.170 0.830 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.023 0.977 44 H 0.370 0.630 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -3.077 28.536 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.161 4.161 5 C -0.034 4.034 6 N -0.323 5.323 7 C 0.338 3.662 8 O -0.455 6.455 9 C -0.072 4.072 10 C -0.146 4.146 11 C 0.109 3.891 12 F -0.108 7.108 13 C -0.177 4.177 14 C 0.116 3.884 15 F -0.100 7.100 16 C -0.144 4.144 17 C 0.006 3.994 18 C -0.110 4.110 19 H 0.069 0.931 20 C 0.033 3.967 21 N -0.391 5.391 22 C -0.378 4.378 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.202 1.202 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.202 0.798 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.059 -3.245 27.925 28.404 hybrid contribution 0.633 -0.273 -1.599 1.741 sum -3.426 -3.519 26.326 26.780 Atomic orbital electron populations 1.21969 0.93832 1.02258 1.02642 1.21075 0.97061 0.99338 0.92402 0.90168 1.21954 1.00790 0.94691 0.98678 1.22509 1.02358 0.94099 0.84438 1.48144 1.55500 1.19899 1.08783 1.18641 0.77647 0.81382 0.88566 1.90879 1.57380 1.62835 1.34449 1.19198 0.94128 1.00687 0.93158 1.21192 0.96320 0.99453 0.97650 1.17009 0.79634 0.98602 0.93807 1.91561 1.35471 1.87943 1.95855 1.21394 0.91647 1.03355 1.01297 1.16918 0.86870 0.99396 0.85169 1.91587 1.67430 1.93420 1.57566 1.21439 1.01808 1.00532 0.90646 1.21475 1.00090 0.92726 0.85142 1.21553 0.99431 0.94098 0.95914 0.93119 1.20870 0.96068 0.94810 0.84938 1.42680 1.56923 1.37488 1.02030 1.19625 1.22430 1.10695 0.85021 0.90301 1.25642 1.00570 0.98975 1.01899 1.69856 1.37156 1.26015 1.29213 0.85178 0.77664 0.77473 0.79246 1.20143 1.22416 1.20154 0.92375 0.90016 0.93331 0.92312 0.86881 0.88143 0.87393 0.84486 0.80297 0.81218 0.90179 0.92990 0.95001 0.95860 0.79829 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.11 71.98 0.58 -2.07 16 2 C -0.08 -1.65 2.71 -10.77 -0.03 -1.68 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.86 5.63 30.68 0.17 -1.69 16 5 C 0.09 1.33 4.92 86.36 0.42 1.75 16 6 N -0.59 -15.48 2.97 -822.31 -2.44 -17.93 16 7 C 0.55 16.74 7.24 86.79 0.63 17.37 16 8 O -0.58 -24.34 16.47 -3.88 -0.06 -24.40 16 9 C -0.07 -1.48 5.00 -20.10 -0.10 -1.58 16 10 C -0.13 -2.71 9.71 22.58 0.22 -2.50 16 11 C 0.13 2.21 7.29 22.33 0.16 2.38 16 12 F -0.13 -2.43 17.26 44.97 0.78 -1.65 16 13 C -0.16 -1.95 10.00 22.41 0.22 -1.73 16 14 C 0.14 1.74 7.29 22.33 0.16 1.90 16 15 F -0.12 -1.52 17.26 44.97 0.78 -0.74 16 16 C -0.13 -1.84 7.34 22.58 0.17 -1.67 16 17 C 0.13 4.26 5.04 86.36 0.44 4.69 16 18 C -0.09 -2.85 2.15 -10.72 -0.02 -2.87 16 19 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 20 C 0.16 6.31 5.19 86.38 0.45 6.75 16 21 N -0.75 -39.55 5.38 -343.45 -1.85 -41.39 16 22 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 23 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -62.77 13.06 21.65 0.28 -62.48 16 26 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 29 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 30 H 0.06 1.02 4.98 -2.39 -0.01 1.01 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.03 6.58 -2.39 -0.02 1.01 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.10 1.13 6.69 -2.39 -0.02 1.11 16 36 H 0.11 1.25 4.55 -2.39 -0.01 1.24 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.17 1.82 7.08 -2.91 -0.02 1.80 16 40 H 0.08 2.49 6.69 -2.39 -0.02 2.47 16 41 H 0.05 2.31 6.24 -2.39 -0.01 2.29 16 42 H 0.03 1.22 6.73 -2.39 -0.02 1.21 16 43 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.37 21.49 6.90 -92.71 -0.64 20.85 16 45 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -76.43 363.91 4.69 -71.74 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.40 Total: 25.77 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 4.78 Total: 1.49 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.01 Total: -121.80 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 1.55 Total: -2.39 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -76.43 4.69 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133298479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.655 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds